genome.fa.s5.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  118  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36062447--36062495	21	2.3	21	92	0	80	48	4	8	38	1.52
36062819--36062843	12	2.1	12	100	0	50	28	0	8	64	1.22
36065386--36065416	8	3.9	8	100	0	62	38	0	0	61	0.96
36065497--36065545	21	2.2	22	85	7	64	67	0	0	32	0.91
36065505--36065562	19	2.9	19	80	10	64	68	1	0	29	0.99
36066821--36067906	489	2.2	484	84	4	1418	40	12	6	40	1.69
36068608--36068670	29	2.2	29	77	11	67	31	4	3	60	1.33
36070123--36070235	53	2.1	53	100	0	226	46	7	15	31	1.72
36076125--36076189	31	2.1	31	88	5	96	46	7	9	36	1.65
36076658--36076687	8	3.8	8	100	0	60	76	0	0	23	0.78
36079743--36079783	16	2.6	16	75	24	50	36	0	0	63	0.95
36084872--36084953	42	2.0	42	90	0	128	31	12	9	46	1.74
36085907--36085931	5	5.0	5	100	0	50	80	20	0	0	0.72
36102053--36102097	23	2.0	22	83	16	56	46	2	2	48	1.26
36102046--36102097	23	2.3	20	74	22	50	48	1	1	48	1.24
36112866--36112923	17	3.3	17	85	7	71	55	0	0	44	0.99
36112872--36112907	18	2.0	18	94	0	63	63	0	0	36	0.94
36113388--36113431	14	2.8	17	80	19	60	52	0	0	47	1.00
36113351--36113431	31	2.5	33	77	20	89	49	3	1	45	1.27
36128395--36128426	4	8.0	4	92	0	55	53	25	0	21	1.46
36133555--36133607	23	2.2	24	87	9	74	41	11	9	37	1.73
36134109--36134147	20	1.9	21	89	5	62	74	0	15	10	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36134111--36134157	20	2.4	19	76	13	51	70	0	19	10	1.16
36154527--36154611	31	2.8	30	77	7	82	36	10	10	42	1.74
36154738--36154798	29	2.1	30	87	3	88	52	13	6	27	1.64
36159366--36159472	52	2.0	54	82	7	130	34	18	9	37	1.83
36160263--36160305	21	2.0	22	81	9	52	37	6	11	44	1.68
36162614--36162644	16	1.9	16	93	0	53	77	6	3	12	1.08
36168859--36168894	18	1.9	19	88	5	56	72	0	0	27	0.85
36169649--36169738	44	2.0	45	91	2	146	34	1	5	58	1.28
36172840--36172883	3	14.7	3	95	0	79	70	0	0	29	0.88
36172939--36172983	23	2.0	22	82	4	54	31	11	8	48	1.69
36183182--36183230	7	6.7	7	86	9	62	87	0	2	10	0.62
36183182--36183230	15	3.3	15	88	8	66	87	0	2	10	0.62
36183181--36183230	22	2.2	23	89	3	75	88	0	2	10	0.61
36186667--36186702	17	2.1	18	89	5	56	41	25	5	27	1.77
36211817--36211881	31	2.1	31	97	0	121	40	6	18	35	1.76
36214278--36214365	46	1.9	46	83	4	115	25	6	12	55	1.61
36220960--36221006	2	23.5	2	100	0	94	0	48	0	51	1.00
36229029--36229072	24	1.9	22	86	9	61	38	0	13	47	1.43
36232073--36232141	29	2.4	29	85	4	86	53	2	0	43	1.15
36241190--36241238	23	2.1	23	82	14	57	59	2	0	38	1.09
36245095--36245171	38	1.9	39	84	7	102	48	1	25	24	1.59
36247021--36247067	11	4.2	11	80	20	53	70	2	2	25	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36247026--36247055	14	2.1	14	93	0	51	70	3	0	26	1.03
36247027--36247073	22	2.1	22	88	7	69	68	4	4	23	1.26
36247038--36247086	22	2.2	21	79	10	53	65	6	8	20	1.41
36248090--36248121	17	1.9	16	93	6	55	46	0	12	40	1.42
36248218--36248261	18	2.4	18	92	7	72	38	11	0	50	1.39
36248410--36248531	58	2.0	61	80	12	137	45	4	1	48	1.31
36262230--36262258	3	9.7	3	100	0	58	34	34	0	31	1.58
36269244--36269305	15	4.1	15	73	8	54	35	4	41	17	1.71
36275807--36275868	31	2.0	32	83	3	81	41	12	3	41	1.59
36276005--36276035	7	4.3	7	95	4	53	74	0	0	25	0.82
36282498--36282543	23	2.0	23	87	8	67	21	8	2	67	1.29
36282669--36282751	29	2.8	29	74	20	82	33	9	2	54	1.46
36284080--36284112	17	2.0	17	88	5	50	27	3	0	69	1.03
36289584--36289632	23	2.0	24	84	7	64	40	12	0	46	1.41
36289581--36289637	24	2.3	26	79	14	66	43	10	0	45	1.38
36297987--36298019	16	2.1	16	94	0	57	51	21	0	27	1.48
36329302--36329367	30	2.2	31	88	2	98	48	0	1	50	1.10
36333872--36333898	3	9.0	3	100	0	54	66	0	0	33	0.92
36334265--36334291	13	2.1	13	100	0	54	44	7	7	40	1.60
36340696--36340725	14	2.1	15	93	6	53	50	3	6	40	1.45
36342569--36342596	2	14.0	2	100	0	56	50	0	0	50	1.00
36353077--36353114	19	2.0	20	89	5	60	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36356960--36357006	16	3.1	16	85	8	55	44	0	0	55	0.99
36358062--36358110	20	2.3	21	83	13	57	51	8	0	40	1.32
36359942--36359992	25	2.1	24	81	3	57	1	33	0	64	1.05
36362040--36362414	89	4.2	89	99	0	732	28	14	11	44	1.80
36375286--36375974	353	2.0	341	83	7	870	29	8	20	41	1.82
36375403--36375984	176	3.3	177	84	5	743	28	9	19	42	1.82
36384267--36384292	7	3.7	7	100	0	52	30	0	0	69	0.89
36385970--36386011	21	2.0	22	86	13	63	54	4	2	38	1.34
36393214--36393249	16	2.1	16	90	10	54	44	0	0	55	0.99
36412576--36412642	22	3.1	21	87	8	84	7	4	17	70	1.28
36412574--36412643	21	3.3	21	86	9	90	7	4	20	68	1.30
36412573--36412710	21	6.3	21	72	16	66	8	5	17	68	1.33
36412639--36412764	12	10.8	12	71	10	66	10	5	15	68	1.37
36412605--36412735	68	1.9	68	81	9	160	11	4	15	68	1.35
36412630--36412758	68	1.9	68	80	3	152	10	5	14	68	1.35
36425381--36425427	19	2.5	18	83	10	58	55	6	0	38	1.26
36428977--36429009	16	2.0	17	88	5	50	51	9	0	39	1.34
36432911--36433031	23	5.2	23	82	11	156	11	24	23	40	1.88
36432911--36433031	48	2.6	46	86	10	165	11	24	23	40	1.88
36432996--36433070	39	1.9	39	91	0	123	12	22	21	44	1.85
36433035--36433124	23	3.9	23	75	17	87	11	24	18	45	1.82
36443980--36444063	27	3.0	26	79	11	87	60	9	5	23	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36454546--36454660	52	2.2	52	85	4	169	29	22	2	45	1.66
36456650--36456698	2	25.0	2	95	4	91	48	0	0	51	1.00
36467319--36467364	23	1.9	25	82	8	60	39	21	8	30	1.84
36477386--36477704	41	7.8	41	78	10	231	30	22	29	17	1.97
36477433--36477578	77	1.9	78	88	1	222	29	21	32	16	1.95
36477530--36477668	48	3.0	48	86	7	193	28	21	28	20	1.98
36477541--36477616	24	3.2	24	62	7	64	28	22	31	17	1.96
36477588--36477723	41	3.3	41	84	2	175	28	24	28	18	1.98
36479922--36479964	4	10.8	4	94	0	68	25	4	25	44	1.73
36485963--36486006	20	2.2	20	88	8	63	59	0	0	40	0.98
36489052--36489095	22	2.0	22	82	8	54	54	6	0	38	1.27
36489148--36489177	3	10.0	3	92	0	51	36	0	0	63	0.95
36490276--36490315	21	1.9	21	84	0	53	52	7	2	37	1.43
36490736--36490804	35	1.9	36	91	2	113	34	2	13	49	1.56
36502318--36502352	17	2.1	17	88	0	52	25	8	14	51	1.70
36503100--36503126	9	3.0	9	100	0	54	55	11	11	22	1.66
36509296--36509325	15	2.0	15	100	0	60	53	20	20	6	1.67
36514737--36514771	12	2.9	12	86	0	52	34	14	0	51	1.42
36518272--36518330	29	2.0	29	83	0	73	32	5	5	57	1.42
36519965--36519993	6	4.8	6	100	0	58	48	17	34	0	1.47
36524173--36524209	18	2.1	17	90	5	56	27	0	5	67	1.12
36547174--36547216	19	2.4	17	78	14	50	53	4	0	41	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36547172--36547267	45	2.1	45	84	7	124	50	2	2	45	1.25
36553035--36553115	31	2.6	31	98	0	153	33	16	13	37	1.87
36554631--36554670	21	1.9	21	84	0	53	40	10	2	47	1.50
36556523--36556568	14	3.3	15	73	14	53	63	0	0	36	0.95
36556511--36556568	27	2.1	29	87	6	84	60	0	0	39	0.97
36562508--36562539	2	16.0	2	100	0	64	50	0	0	50	1.00
36574223--36574263	20	2.0	20	85	0	55	31	0	2	65	1.05
36575846--36575884	16	2.4	16	82	0	51	35	12	17	33	1.88
36584606--36584699	47	2.0	47	97	0	179	56	6	15	21	1.62
36584986--36585021	16	2.1	16	90	10	54	55	0	0	44	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120