genome.fa.s5.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  13  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3640082--3640122	19	2.2	19	86	4	57	60	2	0	36	1.10
3640081--3640137	19	2.9	19	74	12	53	63	1	0	35	1.05
3643688--3643719	5	6.6	5	92	7	57	62	0	0	37	0.95
3654129--3654154	3	8.7	3	100	0	52	30	0	0	69	0.89
3654169--3654215	22	2.1	23	84	11	62	44	6	2	46	1.40
3661040--3661089	25	2.0	25	100	0	100	32	12	20	36	1.89
3665237--3665279	17	2.5	17	96	3	77	39	4	18	37	1.72
3666683--3666724	18	2.5	17	88	7	59	21	4	0	73	1.01
3666678--3666724	4	11.5	4	82	13	60	21	4	0	74	0.99
3667474--3667869	103	3.9	102	74	9	315	37	12	24	26	1.90
3667516--3667869	100	3.5	102	74	10	373	35	12	25	26	1.92
3667486--3667867	203	1.9	203	92	0	640	36	12	24	26	1.91
3668440--3668484	19	2.4	19	81	7	56	37	0	4	57	1.19
3669282--3669340	21	2.8	22	87	7	70	15	10	1	72	1.18
3669293--3669340	21	2.2	22	92	3	80	14	8	2	75	1.13
3669290--3669341	22	2.3	23	87	9	81	15	7	1	75	1.12
3674327--3674483	78	2.0	78	97	0	296	26	25	12	35	1.92
3687745--3687788	21	2.0	22	86	4	63	65	4	4	25	1.30
3687745--3687796	22	2.4	21	84	9	61	63	5	5	25	1.39
3688042--3688070	12	2.4	12	100	0	58	34	34	0	31	1.58
3709637--3709715	38	2.1	38	87	0	113	26	27	21	24	1.99
3712999--3713023	9	2.8	9	100	0	50	36	32	12	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3717303--3717327	2	12.5	2	100	0	50	48	0	0	52	1.00
3719044--3719072	4	7.2	4	100	0	58	48	27	0	24	1.51
3720167--3720264	22	4.2	22	80	14	97	63	19	6	11	1.48
3720173--3720282	50	2.2	50	96	0	202	64	20	5	10	1.43
3720167--3720264	11	9.4	11	73	10	73	63	19	6	11	1.48
3721627--3721781	58	2.6	59	82	9	183	50	1	1	45	1.20
3721746--3721796	24	2.1	24	82	10	59	56	1	3	37	1.29
3732448--3732486	15	2.5	15	87	8	51	20	2	0	76	0.90
3732873--3732911	18	2.1	18	85	4	51	56	2	2	38	1.27
3735575--3735682	57	1.9	55	81	3	126	26	12	10	50	1.73
3735592--3735726	56	2.4	55	78	8	139	23	13	11	51	1.74
3735885--3736056	58	2.9	58	79	6	184	51	11	12	24	1.72
3741481--3741525	23	2.0	23	86	0	63	40	20	8	31	1.83
3743012--3743058	18	2.6	18	93	0	76	55	21	8	14	1.66
3743730--3743759	2	15.0	2	100	0	60	50	50	0	0	1.00
3747658--3747746	7	13.6	7	70	17	66	31	23	25	19	1.98
3747678--3747746	25	2.7	25	84	8	95	30	26	26	17	1.97
3747711--3747760	18	2.8	18	90	0	73	26	24	30	20	1.98
3747677--3747803	25	4.8	26	76	9	89	29	25	25	18	1.98
3747711--3747805	18	5.3	18	75	18	72	30	24	25	20	1.98
3747822--3747859	17	2.3	16	90	4	58	5	5	39	50	1.48
3756547--3756643	29	3.3	29	85	0	140	21	21	14	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3761501--3761550	22	2.3	23	79	6	59	28	28	8	36	1.85
3765915--3765977	11	5.8	11	76	10	67	55	0	1	42	1.09
3765915--3765976	5	11.6	5	75	13	52	56	0	1	41	1.09
3765899--3765976	38	2.1	38	85	4	104	53	0	2	43	1.14
3765917--3765974	17	3.5	17	83	6	75	58	0	1	39	1.08
3765917--3765977	16	3.8	16	82	4	77	55	0	1	42	1.09
3769186--3769257	30	2.4	31	88	6	103	48	19	12	19	1.80
3770047--3770118	31	2.4	30	83	2	90	20	12	18	48	1.80
3770038--3770118	30	2.7	31	78	3	94	23	11	19	45	1.82
3774992--3775310	78	4.1	77	88	1	377	28	19	28	23	1.98
3775021--3775304	156	1.8	156	86	1	417	27	18	30	23	1.98
3775005--3775594	39	15.1	39	70	5	307	27	19	29	23	1.98
3775872--3776250	148	2.6	147	81	4	377	20	33	14	32	1.92
3775899--3776136	98	2.4	99	85	2	318	19	33	15	30	1.94
3775899--3776277	50	7.6	50	74	8	247	20	32	15	31	1.94
3776098--3776277	99	1.8	100	82	3	238	21	32	14	32	1.93
3777314--3777367	1	54.0	1	79	0	54	1	9	0	88	0.58
3777298--3777382	20	4.5	18	77	12	73	7	9	0	83	0.81
3777298--3777382	28	3.0	28	86	8	102	7	9	0	83	0.81
3792814--3792853	19	2.1	19	85	0	53	57	2	5	35	1.34
3823614--3823663	26	2.0	24	84	7	64	60	8	0	32	1.26
3823618--3823698	42	1.9	42	80	14	96	64	7	0	28	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3824579--3824616	20	1.9	20	94	0	67	50	5	5	39	1.48
3845030--3845070	20	2.0	22	90	9	68	48	0	0	51	1.00
3846275--3846344	27	2.6	27	71	13	72	54	0	0	45	0.99
3854041--3854089	21	2.2	23	82	7	66	61	0	2	36	1.08
3854768--3854844	23	3.3	23	74	0	82	55	25	6	11	1.59
3856062--3857447	692	2.0	692	97	0	2596	34	21	12	30	1.91
3859057--3859095	20	2.0	20	89	0	60	33	15	28	23	1.95
3861596--3861621	6	4.3	6	100	0	52	30	15	0	53	1.42
3864461--3864495	18	1.9	18	88	0	52	22	28	22	25	1.99
3864520--3864567	7	6.9	7	83	9	62	16	14	29	39	1.88
3864508--3864568	21	2.9	21	80	9	70	16	16	29	37	1.91
3864508--3864569	14	4.4	15	82	8	60	16	16	29	38	1.90
3870545--3870598	21	2.7	21	80	13	69	42	3	0	53	1.18
3874812--3874850	9	4.1	9	87	12	60	51	0	0	48	1.00
3874812--3874850	20	2.1	19	90	9	62	51	0	0	48	1.00
3875947--3875985	9	4.1	9	87	9	51	48	0	2	48	1.15
3876607--3876661	16	3.4	16	80	9	67	36	1	25	36	1.67
3876843--3876982	52	2.6	52	75	17	131	51	4	0	43	1.26
3882183--3882218	19	1.9	19	94	5	65	58	0	0	41	0.98
3882181--3882220	9	4.3	9	84	6	53	62	0	0	37	0.95
3884261--3884369	29	3.8	30	84	10	131	26	1	29	42	1.66
3884261--3884369	57	1.9	58	83	9	143	26	1	29	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3884323--3884398	29	2.6	29	87	0	98	34	5	23	36	1.78
3884381--3884449	29	2.3	28	80	11	75	33	2	31	31	1.73
3884432--3884635	88	2.3	89	83	5	243	36	3	25	34	1.73
3884403--3884614	118	1.8	117	86	5	311	35	3	27	33	1.73
3884394--3884635	30	8.2	30	80	8	246	35	3	27	34	1.73
3886797--3887226	30	14.7	27	67	25	150	35	2	29	33	1.69
3886760--3887229	59	8.0	59	87	4	628	34	2	29	33	1.71
3886762--3887234	117	4.0	118	86	3	625	34	2	30	33	1.71
3888284--3888319	15	2.3	16	90	4	56	41	0	0	58	0.98
3889933--3890090	85	1.9	85	86	2	228	25	25	14	34	1.94
3890280--3890391	39	2.9	38	82	5	143	22	16	34	25	1.95
3890332--3890854	78	6.7	77	77	8	358	27	17	30	24	1.97
3890475--3890829	39	9.2	39	70	12	212	26	18	30	25	1.98
3890411--3890829	78	5.4	76	82	4	414	27	18	30	24	1.98
3890953--3891005	22	2.4	22	96	0	97	24	28	9	37	1.86
3891189--3891851	99	6.7	98	79	4	652	16	31	17	35	1.92
3891169--3891851	198	3.5	197	84	2	884	16	30	17	35	1.92
3891176--3891892	297	2.4	297	80	4	784	16	31	16	35	1.92
3891169--3891909	50	15.0	49	73	8	414	16	30	17	35	1.92
3891148--3891892	99	7.5	98	77	6	597	16	30	17	35	1.92
3892846--3892917	6	11.7	6	78	11	65	2	16	0	80	0.83
3892845--3892919	11	6.8	10	76	20	62	2	17	0	80	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3892846--3892917	13	5.8	12	79	9	65	2	16	0	80	0.83
3892851--3892916	26	2.3	29	87	10	93	1	18	0	80	0.79
3892845--3892928	37	2.3	37	83	4	107	4	15	0	79	0.89
3895706--3895744	20	2.0	20	100	0	78	20	23	15	41	1.90
3898655--3898773	29	4.1	29	80	10	136	34	5	25	34	1.80
3898655--3898763	58	1.9	57	86	5	157	33	4	23	37	1.76
3898781--3899022	30	8.2	29	74	12	181	37	3	25	33	1.74
3898781--3899022	60	4.1	59	80	6	260	37	3	25	33	1.74
3898857--3899037	59	3.1	58	75	13	163	39	2	24	32	1.70
3899627--3899654	4	7.0	4	100	0	56	25	0	0	75	0.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120