genome.fa.s5.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  30  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7840425--7840469	22	2.1	21	88	8	65	64	8	15	11	1.49
7843404--7843460	18	3.0	18	80	14	69	5	7	17	70	1.29
7843398--7843459	21	3.1	20	84	11	74	4	6	20	67	1.32
7843451--7843545	12	8.1	12	74	9	61	7	5	20	67	1.35
7843423--7843468	21	2.2	21	84	7	58	8	6	15	69	1.34
7843451--7843541	23	3.9	23	76	8	67	7	5	19	67	1.36
7843432--7843541	35	3.2	35	75	16	104	7	6	19	67	1.37
7843463--7843545	24	3.5	24	78	3	80	7	6	19	67	1.36
7843441--7843563	58	2.1	58	79	7	135	8	4	18	68	1.33
7846882--7846914	16	2.0	17	94	5	59	39	12	12	36	1.80
7855795--7855852	30	2.0	30	80	9	68	24	6	27	41	1.80
7860132--7860165	13	2.6	13	100	0	68	32	38	8	20	1.84
7866758--7866937	99	1.8	99	79	7	213	31	8	4	55	1.49
7867910--7868224	60	5.3	59	78	7	300	37	22	2	37	1.67
7867910--7868224	30	10.6	29	80	10	241	37	22	2	37	1.67
7867910--7868188	89	3.1	87	82	7	303	37	22	1	37	1.65
7867940--7868224	59	4.8	58	76	9	236	37	22	2	36	1.68
7869840--7869913	12	5.8	13	78	14	57	48	8	0	43	1.32
7869843--7869900	22	2.3	24	77	22	66	50	8	0	41	1.33
7869854--7869898	22	2.0	24	91	8	76	55	8	0	35	1.31
7879040--7879073	18	1.9	18	88	5	52	50	11	11	26	1.73
7882405--7882499	47	2.0	47	100	0	190	44	10	23	22	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7891498--7891557	30	2.0	30	96	0	111	33	8	23	35	1.85
7895571--7895610	13	2.9	14	82	17	57	0	20	0	80	0.72
7895572--7895610	12	3.3	12	89	10	55	0	20	0	79	0.73
7913685--7913739	22	2.5	22	78	0	65	40	18	14	27	1.89
7913675--7913755	22	3.7	21	75	3	54	39	16	19	24	1.91
7915036--7915095	24	2.4	25	75	10	70	70	5	23	1	1.16
7915036--7915087	21	2.5	22	78	9	54	67	5	25	1	1.23
7931702--7931731	15	1.9	16	93	6	53	30	3	33	33	1.74
7932740--7932785	25	1.9	25	86	8	69	32	4	6	56	1.45
7933811--7933970	80	2.0	80	90	0	248	35	26	18	20	1.95
7936334--7936424	38	2.4	38	83	0	110	35	28	21	14	1.93
7936397--7936514	38	3.1	38	85	3	148	33	28	18	19	1.96
7936387--7936595	37	5.6	37	80	3	204	31	29	20	19	1.97
7936408--7936595	74	2.5	74	83	2	234	30	28	20	19	1.97
7940993--7941086	17	5.6	17	76	12	95	35	1	5	58	1.28
7940995--7941102	6	19.0	6	71	13	59	37	1	4	55	1.31
7940995--7941094	11	9.0	11	68	13	53	37	1	5	57	1.28
7942833--7942929	30	3.2	30	81	5	97	38	23	2	36	1.67
7942855--7943066	30	7.2	29	79	7	178	36	24	1	37	1.66
7942876--7943089	30	7.3	29	78	5	119	38	23	2	35	1.68
7942876--7943134	116	2.2	115	78	5	270	37	24	3	35	1.73
7943130--7943185	29	2.0	29	85	3	78	26	16	8	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7951959--7952162	30	6.8	29	73	16	130	34	22	7	34	1.83
7952032--7952162	29	4.3	30	78	8	131	32	21	7	38	1.82
7954198--7954257	28	2.1	28	87	6	86	26	13	30	30	1.94
7954244--7954552	59	5.3	59	86	1	399	36	3	27	32	1.75
7954448--7954549	29	3.5	29	69	18	86	35	1	27	35	1.68
7956394--7956446	11	4.7	11	88	4	70	56	1	1	39	1.21
7956368--7956465	6	17.0	6	71	16	64	50	2	2	45	1.24
7956394--7956451	23	2.6	23	88	2	82	53	1	1	43	1.21
7956374--7956465	17	5.4	17	77	10	80	51	2	2	44	1.25
7956398--7956488	23	3.4	28	71	14	66	52	3	2	41	1.30
7956755--7957214	76	6.0	76	94	1	796	33	17	15	34	1.91
7969371--7969683	59	5.4	59	88	3	411	36	4	28	31	1.76
7969532--7969694	29	5.6	28	66	18	82	33	5	29	31	1.80
7971518--7971548	11	2.8	11	95	0	53	61	3	0	35	1.12
7971492--7971607	6	20.0	6	68	13	64	50	1	2	45	1.25
7971518--7971607	41	2.2	40	84	2	117	54	1	3	41	1.24
7971528--7971607	18	4.2	18	76	16	81	53	0	3	42	1.18
7975782--7976502	50	14.5	50	72	9	417	34	14	32	19	1.92
7975782--7976847	99	10.9	99	72	9	497	34	15	31	19	1.92
7975782--7976876	149	7.5	150	75	8	613	34	14	31	19	1.92
7975782--7976847	198	5.4	199	75	7	863	34	15	31	19	1.92
7976352--7976492	49	2.9	49	80	3	149	34	16	30	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7976419--7976585	85	2.0	85	85	2	228	34	11	32	20	1.90
7976510--7976845	50	6.8	50	73	5	277	36	15	29	18	1.92
7976376--7976637	135	1.9	134	81	2	310	34	13	32	20	1.91
7976269--7976734	234	2.0	234	81	2	542	34	14	31	19	1.92
7976561--7976946	99	3.9	99	80	3	287	37	16	27	18	1.92
7977176--7977593	81	5.2	81	86	4	491	28	27	16	26	1.97
7977169--7977593	42	10.6	42	82	8	512	29	27	16	25	1.97
7977563--7977652	46	2.0	46	87	8	134	34	22	18	24	1.96
7979364--7979563	60	3.4	58	78	7	188	34	22	6	37	1.80
7979367--7979566	30	6.7	30	77	5	154	34	21	6	38	1.79
7982961--7983000	21	2.0	20	85	5	53	22	15	15	47	1.82
7987136--7987169	9	3.7	9	88	7	50	0	14	0	85	0.60
7987886--7987959	36	2.1	36	85	7	98	44	17	14	22	1.86
7989310--7989410	38	2.7	38	84	4	134	45	11	10	31	1.76
7989346--7989469	64	1.9	65	85	8	173	49	12	7	30	1.68
7989411--7989516	38	2.9	38	86	6	130	54	10	5	29	1.57
7989307--7989506	102	2.0	101	83	4	251	49	11	8	31	1.68
7992044--7992084	21	1.9	22	85	5	57	24	2	2	70	1.11
7992310--7992356	15	3.0	15	75	19	51	46	6	10	36	1.64
7992444--7992504	21	2.8	22	85	2	88	24	1	26	47	1.61
7992908--7993163	38	7.0	35	78	8	181	36	13	22	27	1.92
7992904--7993100	73	2.7	71	81	8	200	37	12	23	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7993159--7993587	140	3.1	140	83	2	547	32	22	17	27	1.96
8004465--8004552	30	2.9	31	73	8	92	39	5	23	30	1.78
8004466--8004693	29	7.8	29	66	17	89	41	4	23	30	1.74
8004437--8004708	58	4.6	57	81	9	266	41	4	23	30	1.74
8005936--8005977	12	3.7	11	81	9	50	35	0	4	59	1.19
8006660--8006712	11	4.6	12	83	9	74	50	3	0	45	1.19
8006658--8006712	17	3.2	17	84	0	83	49	3	0	47	1.19
8006660--8006712	6	9.2	6	83	8	74	50	3	0	45	1.19
8007428--8007859	49	8.8	49	78	3	386	14	26	21	37	1.91
8018893--8019084	97	2.0	97	81	6	228	37	13	17	31	1.88
8019370--8019568	59	3.4	56	79	13	208	36	3	27	33	1.72
8019407--8019574	29	5.8	30	70	12	109	37	2	25	34	1.69
8020759--8020831	3	24.0	3	78	2	56	35	2	4	57	1.32
8021512--8021593	6	14.3	6	72	19	68	52	4	2	40	1.36
8021510--8021594	17	5.0	17	78	14	86	50	5	2	41	1.39
8021510--8021558	11	4.4	11	79	5	62	48	4	0	46	1.20
8021510--8021594	34	2.5	34	83	11	95	50	5	2	41	1.39
8021520--8021620	51	2.0	51	82	0	121	53	6	3	35	1.46
8022357--8022392	18	2.1	18	89	5	56	33	25	0	41	1.55
8025635--8026238	60	10.2	59	79	8	543	35	17	19	27	1.94
8025635--8026188	119	4.6	119	83	7	651	36	17	19	27	1.94
8025633--8026227	59	10.0	58	77	9	277	35	16	19	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8026789--8026831	9	4.6	10	91	8	65	25	0	0	74	0.82
8026790--8026872	18	4.7	18	75	13	75	36	0	0	63	0.94
8026803--8026869	33	2.0	33	88	0	98	41	0	0	58	0.98
8026799--8026876	24	3.0	27	76	14	83	41	0	0	58	0.98
8026827--8026912	20	4.3	19	80	12	68	38	0	3	58	1.15
8026850--8026912	19	3.2	20	82	8	69	34	0	4	60	1.18
8031017--8031075	30	2.0	28	87	6	82	42	1	5	50	1.34
8040104--8040129	12	2.2	12	100	0	52	34	7	0	57	1.27
8044161--8044235	23	3.3	23	86	0	114	34	4	13	48	1.61
8052457--8052524	17	4.1	17	80	1	84	44	1	1	52	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120