genome.fa.s5.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  42  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11562242--11562688	195	2.3	194	84	4	562	27	17	26	27	1.98
11563352--11563401	21	2.4	21	79	0	55	28	14	22	36	1.92
11566974--11567028	28	2.0	28	88	0	83	36	20	16	27	1.93
11568716--11568951	79	3.0	79	91	1	393	29	16	16	37	1.91
11572928--11573170	41	5.9	41	86	1	326	26	25	11	36	1.90
11572942--11573170	123	1.8	125	90	1	372	26	25	12	36	1.91
11584693--11584772	27	3.0	26	78	15	74	30	22	18	28	1.98
11585457--11585502	25	1.9	25	86	8	69	32	4	6	56	1.45
11589420--11589458	8	4.8	8	84	6	51	76	0	2	20	0.90
11589408--11589463	18	3.2	18	76	5	69	73	0	3	23	0.99
11589479--11589599	7	17.4	7	97	1	217	1	14	12	71	1.21
11590505--11590539	13	2.7	13	86	0	52	71	5	17	5	1.25
11591578--11591623	25	1.9	25	86	8	69	32	4	6	56	1.45
11602213--11602267	23	2.5	20	81	18	65	36	3	12	47	1.59
11605299--11605411	58	1.9	59	83	1	147	21	20	13	45	1.85
11607312--11607364	14	3.6	14	72	18	54	62	0	0	37	0.96
11607304--11607362	15	3.9	15	76	6	57	59	0	0	40	0.97
11607491--11607555	34	1.9	34	81	12	80	64	0	7	27	1.20
11607590--11607637	24	2.0	25	87	4	71	75	4	0	20	0.97
11612048--11612115	12	5.9	12	69	8	52	72	14	4	8	1.26
11612024--11612185	53	3.1	54	76	14	142	69	12	4	12	1.33
11612138--11612220	20	3.9	20	72	19	62	68	16	3	10	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11612130--11612230	22	4.7	21	79	8	87	68	16	4	9	1.35
11612087--11612214	54	2.4	53	79	6	136	69	13	4	12	1.33
11614688--11614715	5	5.6	5	100	0	56	82	0	17	0	0.68
11619439--11619482	13	3.4	13	90	0	70	29	6	20	43	1.78
11620882--11621097	100	2.2	99	91	0	342	53	9	5	31	1.56
11625731--11625773	23	1.9	22	86	13	61	46	9	9	34	1.68
11625900--11625991	40	2.3	40	82	0	121	42	21	16	19	1.89
11630133--11630375	81	3.0	80	87	3	333	32	23	18	25	1.97
11631038--11631073	2	18.0	2	100	0	72	50	0	0	50	1.00
11638041--11638097	25	2.2	26	84	9	73	38	28	12	21	1.89
11640663--11640723	26	2.4	25	80	5	59	32	24	18	24	1.97
11640702--11640751	26	1.9	26	83	0	64	26	24	22	28	1.99
11640739--11640806	19	3.6	19	87	0	109	22	32	19	26	1.97
11642209--11642301	3	31.3	3	89	2	116	6	31	0	62	1.20
11643014--11643153	41	3.4	41	85	0	190	37	7	26	28	1.83
11646005--11646492	245	2.0	245	99	0	958	33	16	20	30	1.94
11656284--11656329	23	2.0	23	86	0	65	32	26	10	30	1.90
11657086--11657171	26	3.3	26	83	3	102	33	30	15	20	1.93
11657097--11657171	25	2.9	26	84	4	98	33	32	16	18	1.93
11665795--11665896	24	4.2	24	92	0	159	31	23	22	22	1.98
11667884--11667919	15	2.4	15	85	0	54	47	30	2	19	1.64
11672436--11672490	24	2.2	24	90	3	83	45	9	16	29	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11676823--11676860	18	2.1	19	85	9	53	34	2	2	60	1.24
11676882--11676929	19	2.5	20	75	21	50	45	0	0	54	0.99
11676857--11677175	107	3.0	108	87	4	463	37	4	5	52	1.44
11678603--11678643	18	2.3	18	91	0	64	46	9	34	9	1.70
11688689--11688744	21	2.7	21	94	0	94	33	25	19	21	1.97
11689412--11689589	41	4.4	41	92	0	277	26	19	8	44	1.80
11689533--11689717	41	4.4	42	77	6	160	27	23	10	37	1.88
11697233--11697611	191	2.0	191	100	0	758	34	20	16	28	1.95
11697621--11697799	41	4.4	41	91	1	279	24	20	10	44	1.83
11703238--11703280	18	2.3	18	88	11	61	55	6	6	30	1.53
11704616--11704653	18	2.1	18	100	0	76	34	10	10	44	1.73
11723226--11723266	16	2.7	15	88	3	55	19	12	0	68	1.21
11724129--11724160	15	2.1	15	94	0	55	0	37	0	62	0.95
11734423--11734499	34	2.2	35	90	4	120	22	15	22	40	1.91
11734473--11734525	24	2.2	24	96	0	97	28	9	30	32	1.88
11734921--11734961	19	2.3	18	80	15	50	48	19	2	29	1.61
11735022--11735140	50	2.3	52	81	7	154	37	13	12	36	1.83
11737172--11737711	23	23.5	23	86	0	679	33	5	13	46	1.67
11739362--11739386	7	3.6	7	100	0	50	48	0	0	52	1.00
11739692--11739763	20	3.9	18	75	15	67	4	5	19	70	1.23
11739676--11739780	18	5.4	19	73	15	81	3	5	21	68	1.27
11739676--11739776	38	2.6	41	80	13	122	3	5	21	68	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11739759--11739801	12	3.6	12	90	0	68	6	4	18	69	1.29
11739768--11739852	12	7.5	12	72	10	72	7	2	18	71	1.19
11739759--11739859	12	8.9	12	72	11	61	6	2	20	69	1.26
11739969--11740035	26	2.5	27	80	7	73	35	1	1	61	1.15
11739997--11740040	14	3.1	14	76	23	56	29	0	0	70	0.88
11739986--11740040	28	2.0	27	93	6	94	30	0	0	69	0.89
11747603--11747662	30	2.0	30	87	6	86	35	25	13	26	1.93
11747702--11747798	28	3.5	27	79	6	88	44	28	11	15	1.81
11756923--11756973	24	2.1	24	82	7	59	66	3	3	25	1.26
11757216--11757259	22	2.0	23	86	4	63	77	2	6	13	1.07
11757201--11757271	18	3.9	18	71	14	56	76	2	4	16	1.07
11757903--11757956	21	2.8	19	73	13	56	72	0	22	5	1.05
11758113--11758138	12	2.2	12	100	0	52	19	30	7	42	1.79
11761028--11761084	28	2.1	26	81	15	62	17	3	3	75	1.09
11763176--11763208	10	3.3	10	87	12	50	81	0	6	12	0.85
11763241--11763273	6	5.8	6	96	3	52	18	9	0	72	1.10
11763238--11763274	12	3.4	11	89	10	58	18	8	0	72	1.08
11764196--11764229	18	2.0	17	88	11	52	82	0	11	5	0.83
11764214--11764239	11	2.4	11	100	0	52	76	0	7	15	0.99
11764221--11764258	20	1.9	20	88	0	58	73	2	15	7	1.17
11766357--11766387	13	2.5	13	94	5	55	29	3	0	67	1.06
11769600--11769655	24	2.3	24	90	0	85	3	19	5	71	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11769600--11769655	12	4.7	12	71	8	51	3	19	5	71	1.21
11771238--11771281	17	2.6	18	86	10	58	9	11	0	79	0.93
11773613--11773663	10	5.7	9	90	9	70	72	7	0	19	1.08
11773613--11773655	10	4.4	10	94	5	79	72	9	0	18	1.11
11773613--11773655	19	2.2	20	95	4	79	72	9	0	18	1.11
11773675--11773730	6	9.5	6	84	3	60	16	3	3	76	1.06
11774660--11774720	18	3.3	18	75	4	59	77	3	4	14	1.07
11776867--11776896	13	2.4	13	94	5	53	26	3	0	70	1.03
11778749--11778782	18	1.9	17	88	5	50	20	5	0	73	1.04
11779709--11779755	10	4.6	11	77	20	57	72	4	10	12	1.25
11782067--11782117	12	4.4	11	81	18	50	3	17	0	78	0.90
11782070--11782117	24	2.0	24	84	12	62	4	18	0	77	0.93
11784081--11784122	13	3.2	13	86	6	50	52	19	4	23	1.65
11787518--11787584	28	2.4	28	89	0	98	19	16	19	44	1.87
11799722--11799761	6	6.7	6	88	0	53	55	15	10	20	1.68
11804567--11804617	5	10.0	5	89	4	66	1	19	52	25	1.56
11806588--11806692	44	2.4	44	83	1	129	40	17	17	25	1.90
11809384--11809421	18	2.1	18	95	0	67	28	28	13	28	1.94
11809843--11809898	27	2.1	27	93	0	94	16	39	8	35	1.80
11811295--11811347	27	2.0	27	92	0	88	24	18	0	56	1.42
11811323--11811562	133	1.8	133	88	3	376	27	17	7	47	1.74
11813531--11813588	29	2.0	29	83	3	73	22	44	0	32	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11814552--11814591	20	2.0	20	85	9	55	60	0	2	37	1.11
11816001--11816049	20	2.5	20	82	0	53	42	10	22	24	1.84
11820600--11820630	16	1.9	16	100	0	62	38	12	16	32	1.86
11823548--11829550	216	27.6	216	79	6	5713	28	17	13	40	1.87
11823548--11830716	432	16.6	429	77	8	5729	28	17	13	40	1.87
11823548--11829550	431	13.8	431	79	6	5690	28	17	13	40	1.87
11829561--11830716	216	5.4	216	79	4	1156	27	16	14	41	1.87
11833669--11838032	216	20.3	216	82	4	4754	27	17	13	41	1.87
11833669--11838032	431	10.1	430	82	4	4738	27	17	13	41	1.87
11838870--11838936	32	2.1	32	88	0	98	19	29	13	37	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120