genome.fa.s5.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  33  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8549979--8550045	34	2.0	32	91	5	107	47	2	0	49	1.16
8554753--8554791	6	6.5	6	93	0	60	48	0	28	23	1.51
8555719--8555807	46	1.9	46	88	0	133	28	15	19	37	1.92
8555765--8555948	53	3.5	53	87	1	244	27	13	22	36	1.91
8555710--8555948	106	2.3	99	81	6	273	27	15	22	35	1.94
8559617--8559666	16	3.1	17	78	21	54	36	2	0	62	1.07
8559634--8559666	15	2.2	15	89	10	50	33	0	0	66	0.92
8559699--8559748	19	2.6	19	77	22	59	58	0	8	34	1.28
8562340--8562366	2	13.5	2	100	0	54	48	0	0	51	1.00
8564322--8564371	26	1.9	26	84	8	66	58	4	4	34	1.36
8564946--8565005	14	4.2	14	77	12	59	76	5	3	15	1.08
8569063--8569133	20	3.5	20	69	14	65	50	0	1	47	1.09
8569056--8569133	11	6.6	11	71	23	52	51	0	2	46	1.14
8571920--8572611	158	4.4	158	91	0	1089	36	20	15	27	1.93
8571919--8572611	315	2.2	316	92	0	1147	36	20	15	27	1.93
8585364--8585414	16	3.2	17	78	13	56	50	0	0	49	1.00
8585408--8585476	31	2.3	30	84	2	84	52	0	2	44	1.16
8585417--8585476	31	2.0	31	86	3	86	53	0	1	45	1.10
8585468--8585509	16	2.7	16	85	10	52	59	0	0	40	0.97
8588898--8588939	21	2.0	21	85	0	57	45	23	7	23	1.78
8593874--8594029	58	2.7	58	83	6	192	24	12	11	51	1.72
8594196--8594390	91	2.1	91	80	7	218	47	11	15	25	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8594283--8594390	31	3.5	31	77	9	114	49	11	14	25	1.76
8597021--8597054	3	11.3	3	100	0	68	32	0	0	67	0.91
8597685--8597739	25	2.2	26	83	3	67	32	3	0	63	1.12
8598077--8598121	20	2.2	20	100	0	90	22	13	42	22	1.88
8598246--8598315	34	2.0	35	86	5	97	32	2	18	45	1.64
8599973--8600056	23	3.6	23	80	4	89	38	17	14	29	1.90
8600358--8600382	2	12.5	2	100	0	50	48	0	0	52	1.00
8602714--8602808	30	3.2	29	80	8	93	51	23	14	10	1.73
8602989--8603076	44	2.0	44	97	0	167	30	19	36	13	1.90
8603290--8603385	30	3.2	29	81	8	113	19	15	38	26	1.92
8610292--8610339	21	2.3	21	92	0	78	27	16	22	33	1.96
8611162--8611216	28	1.9	29	85	3	76	27	7	21	43	1.79
8615968--8616212	53	4.6	53	90	1	357	37	23	13	25	1.91
8629278--8629340	6	10.7	6	79	17	62	19	1	0	79	0.82
8629277--8629324	11	4.5	11	80	19	57	18	0	0	81	0.70
8629277--8629340	32	2.0	32	82	11	78	20	1	0	78	0.84
8629279--8629353	18	4.1	17	80	16	71	20	2	0	77	0.89
8629277--8629345	23	2.6	26	78	21	81	20	1	0	78	0.83
8631635--8631736	22	4.5	22	88	2	141	37	28	21	12	1.90
8631635--8631736	45	2.3	45	87	3	143	37	28	21	12	1.90
8631725--8631778	23	2.3	23	87	0	72	40	16	27	14	1.88
8633770--8633815	25	1.9	23	86	8	65	32	4	6	56	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8640990--8641023	14	2.5	14	90	4	52	35	8	0	55	1.31
8642553--8642727	45	3.9	45	92	0	269	42	16	5	35	1.72
8642696--8642756	29	2.1	29	87	0	86	45	16	1	36	1.57
8642651--8642892	74	3.1	74	81	11	250	44	16	4	34	1.69
8642725--8643556	45	18.9	45	83	4	1029	42	16	6	34	1.74
8642606--8643114	119	4.0	119	81	11	500	42	17	5	34	1.72
8642725--8643556	179	4.7	180	86	3	1074	42	16	6	34	1.74
8642725--8643556	134	6.3	134	87	2	1043	42	16	6	34	1.74
8643067--8643135	22	3.1	22	66	15	52	42	17	7	33	1.77
8643430--8643504	36	2.1	36	87	0	105	41	17	5	36	1.72
8643480--8643557	37	2.1	38	90	2	122	39	14	6	39	1.71
8643847--8643893	24	2.0	24	83	8	60	68	8	12	10	1.40
8644799--8644851	22	2.4	22	81	9	54	20	9	3	66	1.37
8645264--8645311	21	2.3	21	85	3	62	25	4	6	64	1.35
8645909--8646237	36	8.6	36	79	9	316	42	16	6	34	1.74
8646006--8646129	45	2.8	45	77	4	124	41	17	8	33	1.79
8646761--8646840	19	4.3	18	72	20	58	50	2	18	28	1.60
8646756--8646899	56	2.6	56	84	3	182	49	5	16	28	1.68
8646761--8646899	28	4.9	28	88	2	163	50	5	16	27	1.68
8648120--8648207	26	3.4	26	91	0	131	27	25	14	32	1.95
8649541--8649598	29	2.0	29	100	0	116	41	13	13	31	1.84
8654341--8654379	17	2.3	17	95	0	69	12	12	28	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8661592--8661675	30	2.8	30	96	1	152	33	0	28	38	1.58
8662500--8662538	19	2.0	20	85	5	53	17	23	2	56	1.53
8663785--8663952	85	2.0	85	84	2	221	24	23	14	36	1.93
8664031--8664469	46	9.9	45	83	8	483	28	17	23	31	1.96
8664031--8664466	134	3.3	135	85	6	554	27	17	23	31	1.96
8664665--8664761	49	2.0	49	83	0	122	18	30	14	36	1.91
8664729--8664853	49	2.6	49	74	6	137	20	28	12	40	1.87
8665656--8665703	16	3.0	15	80	19	53	4	10	4	81	0.97
8670925--8671072	30	5.0	29	85	3	163	37	1	24	36	1.64
8670944--8671095	60	2.5	59	84	7	182	37	1	23	37	1.64
8670957--8671095	30	4.6	30	81	11	126	38	1	23	36	1.64
8671326--8671352	6	4.5	6	100	0	54	14	14	51	18	1.76
8671319--8671363	18	2.5	17	82	10	54	8	20	53	17	1.70
8679164--8679193	13	2.4	12	94	5	51	63	0	3	33	1.11
8680721--8681312	297	2.0	297	98	0	1148	34	13	21	30	1.92
8688195--8688222	2	14.0	2	100	0	56	50	0	0	50	1.00
8693687--8693726	19	2.1	19	86	9	55	37	0	0	62	0.95
8693686--8693715	15	2.1	14	93	6	51	40	0	0	60	0.97
8698895--8699460	50	11.4	50	74	8	397	34	17	32	15	1.91
8698924--8699460	99	5.4	99	75	6	410	34	17	32	15	1.91
8699074--8699353	149	1.9	148	81	2	346	35	16	32	15	1.90
8698925--8699467	199	2.7	198	81	5	589	34	17	32	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8698925--8699470	198	2.8	198	81	4	602	34	17	32	15	1.91
8699716--8699797	41	2.0	42	85	2	112	31	17	20	30	1.95
8699916--8701029	209	5.3	209	86	1	1464	37	18	21	22	1.94
8701411--8701472	17	3.6	17	77	12	72	38	3	4	53	1.39
8703138--8703518	30	12.9	30	75	14	330	33	23	6	36	1.81
8703304--8703549	29	8.4	29	73	12	155	33	24	5	35	1.79
8703157--8703584	59	7.3	59	80	8	272	33	24	6	35	1.81
8703138--8703590	30	15.4	30	76	9	237	32	25	6	35	1.82
8703334--8703590	29	8.8	29	76	11	206	32	27	5	34	1.81
8704812--8704845	15	2.3	15	94	0	59	52	8	11	26	1.67
8706957--8706992	18	2.0	18	88	0	54	38	0	0	61	0.96
8706957--8706994	17	2.2	18	85	4	51	39	0	0	60	0.97
8710422--8710611	59	3.2	59	84	5	224	24	15	11	48	1.78
8710759--8710831	31	2.3	32	88	6	105	43	10	16	28	1.82
8727234--8727357	60	2.1	59	82	7	144	21	12	3	62	1.45
8727920--8727978	26	2.4	25	78	13	68	25	10	1	62	1.36
8732626--8732668	20	2.2	20	91	0	68	25	4	0	69	1.07
8734253--8734435	43	4.3	43	86	2	235	26	25	10	36	1.89
8737944--8738100	74	2.1	73	82	4	190	24	18	24	31	1.97
8739935--8739995	30	2.0	30	87	0	86	27	24	29	18	1.98
8745183--8745450	60	4.5	59	80	12	246	38	5	22	34	1.77
8745199--8745441	30	8.1	30	82	5	206	37	5	21	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8747145--8747171	12	2.2	12	100	0	54	44	0	0	55	0.99
8750400--8750476	6	13.3	6	77	8	70	40	0	2	57	1.13
8750400--8750476	11	6.7	12	75	8	70	40	0	2	57	1.13
8750417--8750481	23	2.8	23	95	0	112	40	0	4	55	1.21
8750400--8750449	17	2.9	17	87	0	73	40	0	2	58	1.10
8751774--8751857	30	2.8	30	79	0	96	39	22	2	35	1.67
8751841--8752182	29	11.7	29	76	14	217	35	27	4	32	1.78
8751841--8752178	30	11.5	30	74	16	196	35	26	5	33	1.78
8751841--8752182	59	5.8	60	77	10	307	35	27	4	32	1.78
8763362--8763457	46	2.1	45	86	1	129	45	15	21	16	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120