genome.fa.s5.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  70  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20553163--20553216	23	2.3	24	75	15	60	38	3	9	48	1.53
20554257--20554350	41	2.3	41	96	0	170	38	26	5	29	1.78
20554341--20554380	17	2.4	17	86	0	53	47	22	12	17	1.81
20558736--20558776	18	2.3	18	87	4	57	34	12	4	48	1.62
20566177--20566205	14	2.0	15	93	6	51	6	24	0	68	1.13
20566465--20566594	66	2.0	66	95	0	233	23	11	27	36	1.90
20572192--20572216	12	2.1	12	100	0	50	40	16	8	36	1.77
20576944--20577014	21	3.4	21	81	11	83	33	26	11	28	1.91
20579000--20579037	19	2.0	19	100	0	76	42	15	5	36	1.70
20582244--20582306	22	2.9	21	83	2	72	17	17	22	42	1.89
20582322--20582388	25	2.7	25	88	0	98	11	23	16	47	1.80
20588273--20588308	18	2.0	18	100	0	72	44	0	11	44	1.39
20588366--20588454	22	4.0	22	77	1	97	13	17	22	46	1.83
20588460--20588521	25	2.5	25	92	2	99	12	29	16	41	1.85
20595302--20595341	21	1.9	21	94	0	71	27	22	17	32	1.96
20598378--20598433	28	2.0	28	100	0	112	21	32	17	28	1.96
20602400--20602431	15	2.1	15	100	0	64	25	18	18	37	1.94
20609602--20609635	17	2.0	17	94	0	59	26	26	17	29	1.98
20610737--20610980	124	2.0	124	90	1	391	36	21	19	22	1.95
20613504--20613539	18	1.9	18	88	5	54	30	2	0	66	1.06
20616493--20616536	20	2.3	19	84	4	52	27	13	27	31	1.94
20628089--20628132	23	1.9	23	90	0	70	31	20	20	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20629488--20629541	21	2.5	22	79	11	58	38	9	0	51	1.34
20631886--20631959	37	2.0	37	83	0	94	27	10	28	33	1.90
20638456--20638505	20	2.5	20	90	0	73	28	4	10	58	1.49
20641683--20641904	42	5.3	42	86	3	268	24	26	10	38	1.88
20643117--20643239	42	3.0	42	84	3	160	41	9	24	24	1.85
20653262--20653304	21	2.0	21	82	8	52	32	0	25	41	1.56
20653368--20653406	6	6.5	6	87	0	51	46	0	30	23	1.53
20658170--20658431	62	4.2	62	92	0	452	30	14	22	32	1.94
20662307--20662373	2	34.0	2	96	3	127	50	0	0	49	1.00
20666657--20666691	16	2.1	17	89	5	54	5	25	0	68	1.11
20669122--20669205	14	5.7	14	72	10	69	59	0	27	13	1.34
20669125--20669210	21	4.2	20	66	22	54	59	0	26	13	1.35
20669119--20669209	30	3.0	30	93	0	164	59	0	26	14	1.35
20669206--20669257	18	2.9	18	82	0	59	38	13	3	44	1.62
20675538--20675599	10	6.3	10	78	17	51	67	3	0	29	1.06
20675507--20675598	19	4.9	18	75	6	69	63	4	2	30	1.26
20683406--20683742	41	8.2	41	80	2	320	32	20	28	18	1.96
20683801--20683877	34	2.3	35	86	13	124	55	5	0	38	1.22
20688501--20688559	24	2.5	24	82	0	73	50	10	11	27	1.71
20688517--20688563	24	2.0	24	91	0	76	57	8	10	23	1.60
20690429--20690512	43	2.0	43	92	0	141	28	19	26	26	1.98
20694482--20694531	26	1.9	26	84	8	66	42	14	14	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20694724--20695014	52	5.6	52	92	0	474	34	24	16	25	1.95
20699352--20699384	11	3.0	11	90	0	57	24	36	21	18	1.95
20699374--20699443	20	3.5	20	82	5	79	22	22	20	34	1.97
20699378--20699442	27	2.4	28	79	7	80	23	20	20	36	1.95
20708493--20708578	41	2.1	41	97	0	163	44	16	11	27	1.82
20711355--20711392	14	2.7	14	84	12	51	50	7	10	31	1.66
20714752--20714781	2	15.0	2	92	0	51	50	3	0	46	1.18
20717578--20717618	14	3.1	14	82	6	50	48	0	51	0	1.00
20717580--20717628	20	2.4	19	80	12	53	51	0	46	2	1.12
20721677--20721720	15	2.9	15	77	12	54	40	9	22	27	1.84
20721638--20721733	27	3.3	29	84	5	97	42	5	20	31	1.74
20721694--20721780	40	2.2	40	87	0	120	45	8	24	21	1.78
20725050--20725108	14	4.4	14	68	8	50	72	3	3	20	1.13
20729344--20729402	29	2.0	29	100	0	118	38	10	16	33	1.83
20735887--20735931	18	2.4	18	85	10	56	64	2	4	28	1.25
20736636--20736697	21	3.0	21	75	13	65	35	11	14	38	1.82
20738319--20738351	6	5.5	6	96	0	57	60	0	21	18	1.36
20757178--20757216	20	2.0	20	85	9	55	56	2	2	38	1.27
20758971--20759001	13	2.4	13	94	0	53	38	6	29	25	1.81
20761426--20761460	18	1.9	18	94	0	61	22	2	20	54	1.58
20763100--20763146	20	2.3	21	88	3	69	57	4	2	36	1.30
20763324--20763350	12	2.2	12	100	0	54	22	7	7	62	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20765172--20765225	7	7.9	7	79	4	56	37	25	20	16	1.93
20765171--20765225	21	2.7	20	80	2	65	38	25	20	16	1.92
20765171--20765229	14	4.3	14	83	10	77	37	25	20	16	1.93
20765219--20765293	22	3.4	22	83	5	80	29	28	28	14	1.95
20766540--20766609	29	2.4	29	86	6	90	41	1	0	57	1.08
20766571--20766612	20	2.0	22	90	9	70	52	0	0	47	1.00
20780083--20780120	19	2.1	19	95	5	69	55	2	0	42	1.14
20780085--20780128	19	2.3	18	88	7	61	52	4	0	43	1.22
20780028--20780300	144	1.9	144	86	7	394	46	3	6	43	1.46
20780026--20780331	144	2.1	140	81	11	368	46	3	7	43	1.47
20780885--20780932	16	2.9	16	81	9	53	18	6	6	68	1.32
20783299--20783353	25	2.1	27	80	12	62	45	1	25	27	1.64
20785929--20785966	3	12.7	3	100	0	76	65	0	0	34	0.93
20799779--20799826	19	2.6	17	78	18	51	41	2	4	52	1.32
20801063--20801110	23	2.1	23	84	0	60	35	10	10	43	1.73
20814686--20814734	24	2.0	25	84	4	64	26	4	2	67	1.19
20820503--20820530	10	2.8	10	100	0	56	28	28	0	42	1.56
20820807--20820848	21	2.0	21	90	0	66	19	9	19	52	1.72
20821903--20822056	56	2.7	58	81	7	181	42	2	3	51	1.34
20822216--20822274	16	3.8	16	73	10	50	32	18	5	44	1.72
20822493--20822556	27	2.4	27	83	0	74	53	18	3	25	1.59
20834019--20834154	62	2.2	63	88	4	204	23	16	12	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20841248--20841282	15	2.4	15	90	4	54	31	5	14	48	1.67
20843038--20843140	39	2.6	40	82	3	118	33	19	29	17	1.95
20846227--20846277	21	2.4	21	93	0	84	31	15	49	3	1.63
20861632--20861656	9	2.8	9	100	0	50	72	0	12	16	1.13
20867297--20867352	22	2.5	22	85	0	76	64	8	7	19	1.45
20867305--20867337	14	2.3	15	89	5	50	60	12	9	18	1.57
20874633--20874691	26	2.2	26	87	3	82	23	20	20	35	1.96
20874650--20874694	19	2.3	20	80	3	56	22	20	17	40	1.92
20878496--20878660	55	3.0	55	89	3	235	33	21	18	27	1.96
20878520--20878687	28	6.1	27	69	16	103	34	20	17	26	1.95
20879399--20879438	20	2.0	20	95	0	71	55	17	5	22	1.61
20879490--20879621	6	23.3	6	68	21	54	43	0	2	53	1.18
20879515--20879610	23	4.4	23	75	15	89	44	1	2	52	1.19
20879500--20879602	40	2.7	38	76	11	93	43	0	2	52	1.22
20879560--20879621	17	3.9	17	73	26	73	41	0	0	58	0.98
20879558--20879621	29	2.2	29	83	5	85	42	0	0	57	0.98
20894507--20894637	60	2.2	60	90	2	210	42	10	13	32	1.79
20896131--20896186	12	4.4	12	75	16	51	46	8	1	42	1.45
20896735--20896765	13	2.4	13	100	0	62	74	6	6	12	1.21
20896743--20896781	19	2.1	19	85	0	51	71	5	7	15	1.26
20898581--20898648	2	34.0	2	100	0	136	50	0	0	50	1.00
20899757--20899817	22	2.7	23	76	2	61	27	14	14	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20903306--20903349	12	3.7	12	81	0	52	22	36	0	40	1.54
20906278--20906304	2	13.5	2	100	0	54	51	0	0	48	1.00
20908918--20909163	56	4.4	56	87	0	341	32	24	17	25	1.96
20909004--20909150	27	5.3	27	65	15	93	33	25	14	26	1.95
20908918--20909213	112	2.6	111	83	3	319	32	24	18	25	1.97
20911052--20911130	20	3.9	20	74	23	76	37	0	10	51	1.36
20916435--20916492	26	2.2	26	82	14	75	48	3	0	48	1.18
20921951--20922015	34	1.9	34	100	0	130	40	3	9	47	1.51
20921957--20922011	17	3.2	17	70	10	58	40	3	7	49	1.48
20927407--20927495	34	2.6	36	80	12	105	55	3	1	40	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120