genome.fa.s5.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  24  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6257819--6257968	24	6.4	24	83	3	189	23	16	18	41	1.90
6257819--6257971	47	3.3	47	85	0	218	22	16	18	41	1.89
6262288--6262414	32	4.2	31	70	21	97	26	18	7	47	1.76
6262276--6262469	92	2.1	88	83	10	232	26	17	10	44	1.82
6262612--6262714	28	3.5	29	71	16	86	47	9	12	30	1.73
6274291--6274322	14	2.3	14	100	0	64	25	6	18	50	1.70
6274927--6275169	49	5.0	49	70	14	133	17	24	18	38	1.92
6274832--6275171	99	3.5	98	81	2	371	17	25	19	37	1.93
6288898--6288948	3	16.7	3	95	4	93	68	0	0	31	0.90
6301759--6301818	30	2.0	31	90	3	95	36	0	43	20	1.52
6303943--6304047	55	1.9	56	88	5	160	28	13	6	51	1.66
6304276--6304368	33	2.9	32	87	6	125	50	9	13	25	1.72
6313472--6313535	3	21.3	3	100	0	128	32	0	0	67	0.91
6313678--6313718	18	2.3	18	100	0	82	34	24	7	34	1.83
6315717--6315760	20	2.2	20	83	4	52	47	2	2	47	1.27
6316137--6316199	26	2.5	24	72	20	56	36	0	0	63	0.95
6316167--6316209	20	2.2	19	87	4	59	44	2	0	53	1.13
6316754--6316828	6	12.8	6	74	16	68	40	4	1	54	1.27
6316754--6316828	11	6.5	11	77	17	64	40	4	1	54	1.27
6316754--6316839	17	5.4	16	78	10	95	41	4	1	52	1.30
6316786--6316812	14	1.9	14	100	0	54	37	11	0	51	1.37
6316769--6316827	31	1.9	31	92	0	100	38	5	1	54	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6318728--6319119	29	13.5	28	70	20	229	32	29	3	35	1.74
6318726--6319155	59	7.4	59	88	3	575	32	29	3	34	1.75
6331176--6331319	46	3.1	46	61	28	106	38	18	14	28	1.90
6331104--6331787	92	7.4	92	94	0	1174	36	20	16	26	1.93
6332110--6332168	6	9.8	6	75	14	59	40	5	0	54	1.23
6332110--6332179	17	4.4	16	77	12	72	42	5	0	51	1.25
6332126--6332152	14	1.9	14	100	0	54	37	11	0	51	1.37
6333313--6333342	15	2.1	14	93	6	51	83	0	13	3	0.77
6333986--6334440	59	7.7	59	86	4	582	32	27	4	36	1.77
6333986--6334412	176	2.4	176	89	3	626	33	26	3	36	1.75
6333987--6334440	235	1.9	235	87	3	664	32	26	4	36	1.77
6337332--6337359	6	4.7	6	100	0	56	53	0	0	46	1.00
6339022--6339060	19	2.1	19	85	9	53	53	0	0	46	1.00
6346083--6346831	375	2.0	375	99	0	1489	30	22	14	32	1.93
6348681--6348708	2	14.0	2	100	0	56	50	0	0	50	1.00
6348832--6349163	179	1.9	179	92	1	567	30	18	15	35	1.93
6350376--6350419	13	3.4	14	79	14	51	38	0	0	61	0.96
6350436--6350476	15	2.9	14	82	7	55	43	7	2	46	1.44
6360736--6360789	26	2.1	25	96	3	99	33	27	7	31	1.84
6364104--6364157	26	2.1	25	96	3	99	33	27	7	31	1.84
6365075--6365106	17	1.9	17	93	6	57	18	25	6	50	1.70
6365097--6365130	16	2.2	16	94	5	61	26	5	14	52	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6372272--6372392	23	5.2	23	82	9	138	11	22	23	42	1.86
6372274--6372392	48	2.5	46	81	10	134	11	21	22	43	1.85
6376363--6376452	41	2.2	41	100	0	180	27	4	21	46	1.70
6376892--6376944	20	2.6	22	83	16	71	30	24	5	39	1.78
6377720--6377770	23	2.2	23	86	10	68	1	17	0	80	0.81
6379771--6379842	36	2.0	35	89	2	108	41	31	5	20	1.76
6381507--6381581	35	2.2	34	79	13	82	46	0	2	50	1.15
6387865--6387902	17	2.2	17	90	0	58	18	21	39	21	1.93
6390391--6390417	7	3.9	7	100	0	54	11	29	0	59	1.32
6391218--6391266	18	2.7	18	87	0	71	2	16	2	79	0.92
6391222--6391266	9	5.1	8	80	19	54	2	15	2	80	0.92
6394188--6394226	21	1.9	21	89	5	62	66	7	12	12	1.43
6400931--6400970	7	5.7	7	90	0	62	15	30	0	55	1.41
6421068--6421228	80	2.0	80	93	0	277	44	14	9	32	1.77
6435932--6435998	26	2.8	25	73	8	59	64	0	1	34	1.03
6436915--6436959	10	4.4	10	85	2	63	71	2	0	26	0.98
6436901--6436949	20	2.4	21	93	3	82	69	2	0	28	1.00
6436982--6437015	16	2.1	16	100	0	68	32	11	11	44	1.77
6437793--6437869	14	5.5	14	80	6	75	33	14	12	38	1.84
6438117--6438183	17	3.8	17	78	7	80	41	2	2	52	1.32
6440312--6440443	29	4.5	29	69	21	89	36	26	4	32	1.77
6440312--6440443	58	2.3	59	84	6	171	36	26	4	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6440698--6440891	97	2.0	97	86	6	268	29	17	14	39	1.89
6442733--6442810	30	2.6	30	75	6	86	28	19	10	42	1.83
6443089--6443178	25	3.5	24	74	15	83	60	7	7	24	1.51
6443031--6443191	57	2.9	55	76	13	152	55	9	10	23	1.63
6443943--6444000	25	2.3	25	90	0	98	37	8	25	27	1.85
6444113--6444194	31	2.6	31	90	1	128	51	6	2	40	1.40
6445401--6445495	32	3.0	32	87	6	149	61	13	2	23	1.43
6446893--6446955	26	2.5	24	77	12	63	68	0	0	31	0.90
6448986--6454316	888	6.0	888	99	0	10653	31	20	13	35	1.91
6459088--6459123	18	2.0	18	100	0	72	38	16	22	22	1.93
6465017--6465199	99	1.8	99	89	5	289	55	3	4	36	1.38
6469132--6469469	102	3.3	101	81	2	381	25	24	25	24	2.00
6469801--6470173	132	2.8	136	90	4	612	39	17	4	37	1.72
6484420--6484482	29	2.2	28	81	16	67	39	3	7	49	1.48
6493558--6493634	39	2.0	39	97	0	145	10	6	44	38	1.65
6493558--6493618	20	3.1	20	65	13	54	11	8	40	39	1.71
6494446--6494471	2	13.0	2	100	0	52	50	0	0	50	1.00
6498585--6498631	16	3.1	16	73	17	55	40	8	0	51	1.33
6503622--6503656	19	1.9	19	88	11	56	60	0	5	34	1.21
6509803--6509931	59	2.2	59	82	0	150	41	13	17	27	1.87
6514810--6514841	16	2.0	16	93	0	55	53	3	18	25	1.59
6515277--6515467	41	4.6	41	92	3	312	36	11	24	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6515277--6515496	82	2.7	81	87	5	282	38	10	23	27	1.87
6518590--6518918	82	4.0	82	83	5	385	29	13	12	44	1.80
6518589--6518956	164	2.3	163	83	5	431	29	13	12	44	1.80
6526356--6526459	51	2.0	51	81	3	120	38	4	3	52	1.41
6526605--6526852	83	3.0	82	80	5	266	31	12	10	45	1.76
6526605--6526911	166	1.8	166	81	4	377	30	12	10	46	1.76
6532531--6532689	24	6.5	24	73	5	120	18	26	17	37	1.93
6532494--6532611	50	2.3	50	83	5	146	20	25	16	37	1.93
6532523--6532689	74	2.3	74	89	0	253	18	26	17	37	1.93
6532599--6532696	50	2.0	50	87	0	142	18	23	18	39	1.92
6533024--6533141	51	2.3	51	80	10	141	34	5	5	53	1.50
6535488--6535538	20	2.4	21	81	15	61	60	3	3	31	1.33
6536745--6536866	62	2.0	62	83	3	156	26	15	24	33	1.95
6536809--6536877	21	3.3	21	78	6	68	28	17	18	34	1.94
6537123--6537171	19	2.7	19	73	17	50	57	2	4	36	1.30
6537358--6537394	2	18.5	2	88	0	56	2	0	43	54	1.14
6540315--6540340	3	8.7	3	100	0	52	0	0	30	69	0.89
6540637--6540676	6	6.7	6	94	0	62	70	0	10	20	1.16
6540633--6540676	18	2.4	18	88	0	70	68	0	9	22	1.18
6541020--6541061	21	2.0	21	90	0	66	59	7	0	33	1.25
6541071--6541130	27	2.2	28	81	3	68	46	3	3	46	1.35
6542336--6542393	19	2.9	20	79	5	64	32	5	0	62	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6542349--6542404	19	2.9	19	81	5	60	28	5	1	64	1.26
6542368--6542579	87	2.6	79	77	14	212	33	5	4	56	1.42
6542474--6542551	36	2.2	35	90	2	120	33	5	3	57	1.39
6542522--6542638	21	5.4	20	72	14	81	33	6	4	55	1.46
6542521--6542649	66	1.9	66	87	7	190	36	6	3	52	1.47
6543570--6543631	30	2.1	30	93	0	106	29	3	6	61	1.37
6543853--6543894	17	2.5	17	78	21	52	69	7	0	23	1.13
6544580--6544709	57	2.3	56	81	10	149	35	19	16	29	1.93
6551271--6551379	20	6.1	18	72	22	79	52	0	1	45	1.11
6551300--6551379	18	4.7	17	73	26	64	53	0	1	45	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120