genome.fa.s5.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  81  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23613645--23613676	16	2.0	16	100	0	64	43	0	6	50	1.27
23613776--23613862	41	2.1	42	80	6	97	37	6	14	40	1.73
23627076--23627516	218	2.0	218	100	0	882	39	17	16	27	1.90
23627687--23627728	22	2.0	22	85	4	59	66	4	14	14	1.40
23634512--23634546	16	2.2	16	89	0	52	80	2	5	11	1.00
23639741--23639797	22	2.7	20	78	10	51	61	8	7	22	1.50
23642867--23643160	51	5.7	51	88	0	417	28	22	14	34	1.93
23650337--23650362	7	3.7	7	100	0	52	84	0	0	15	0.62
23656167--23656201	17	2.1	17	94	0	61	42	17	0	40	1.49
23657611--23657661	3	17.0	3	95	0	93	1	33	0	64	1.05
23658308--23658341	2	17.0	2	100	0	68	50	0	0	50	1.00
23658401--23658426	3	8.7	3	100	0	52	65	0	34	0	0.93
23662959--23662997	13	2.8	13	81	11	51	12	0	10	76	1.01
23663221--23663271	12	4.4	11	75	20	50	17	0	3	78	0.90
23663221--23663269	19	2.4	21	86	13	75	18	0	4	77	0.92
23663225--23663308	19	4.7	19	77	14	61	21	4	3	70	1.22
23663223--23663319	18	5.4	18	73	11	67	20	4	4	71	1.20
23672576--23672677	10	10.8	10	70	16	58	32	1	3	61	1.25
23676730--23676755	9	2.9	9	100	0	52	30	0	34	34	1.58
23687874--23687916	18	2.4	18	88	7	61	46	0	0	53	1.00
23707389--23707425	8	4.5	8	90	6	56	40	0	59	0	0.97
23707568--23707612	23	2.0	24	86	8	67	42	0	2	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23708388--23708441	23	2.4	22	76	14	56	59	0	18	22	1.38
23709563--23709620	17	3.4	17	82	2	71	44	1	1	51	1.21
23710077--23710110	3	11.3	3	93	0	59	61	0	2	35	1.11
23711005--23711115	30	3.7	32	80	14	112	39	24	3	32	1.72
23711001--23711120	59	2.1	58	82	4	143	37	27	4	30	1.76
23711005--23711122	29	4.0	29	76	11	98	38	27	4	30	1.76
23721082--23721675	205	2.9	206	92	1	958	34	19	22	23	1.96
23722059--23722116	17	3.4	17	80	2	62	46	1	1	50	1.22
23722574--23722622	3	16.3	3	100	0	98	65	0	0	34	0.93
23723505--23723707	30	6.9	30	79	12	199	37	27	2	32	1.70
23723509--23723707	58	3.4	59	82	8	246	38	26	2	32	1.70
23723544--23723825	59	4.8	58	74	11	179	34	25	4	36	1.76
23723509--23723825	117	2.7	115	78	9	270	35	25	4	35	1.75
23727594--23727673	40	2.0	40	95	0	142	30	10	11	48	1.71
23734233--23734349	31	3.8	31	69	20	86	43	11	19	25	1.84
23737549--23737594	24	1.9	24	81	0	56	28	15	21	34	1.94
23740293--23740337	18	2.3	20	85	14	60	68	2	0	28	1.01
23740294--23740396	20	5.3	20	72	13	67	58	4	0	35	1.26
23740452--23740500	20	2.5	20	93	0	89	65	4	2	28	1.22
23747254--23747278	13	1.9	13	100	0	50	20	0	0	80	0.72
23752722--23752974	30	8.5	30	72	13	116	39	3	23	33	1.72
23752772--23752884	60	1.9	59	81	5	138	42	2	22	32	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23752779--23753007	119	1.9	120	82	7	288	39	3	22	34	1.72
23752842--23753007	30	5.6	29	74	10	106	38	3	21	36	1.71
23755224--23755391	85	2.0	85	85	2	230	23	21	15	39	1.91
23755482--23756322	46	19.1	45	80	7	840	28	17	21	32	1.96
23755483--23756322	133	6.4	128	80	9	808	28	17	21	32	1.96
23755487--23756319	175	4.7	174	81	8	865	28	17	21	32	1.96
23757521--23757586	9	7.3	9	76	11	55	6	13	0	80	0.89
23757533--23757570	8	4.6	8	81	18	51	2	10	0	86	0.66
23757524--23757578	26	2.1	26	90	6	85	5	12	0	81	0.84
23757535--23757583	16	3.3	15	80	8	55	8	8	0	83	0.81
23757536--23757586	22	2.3	23	80	16	63	7	9	0	82	0.85
23761609--23761800	30	6.4	30	72	9	124	34	4	26	33	1.77
23761624--23761690	29	2.3	29	80	12	75	35	7	28	28	1.84
23761802--23761860	30	2.0	30	83	3	75	44	5	18	32	1.72
23761729--23761879	79	1.9	79	82	5	189	38	5	23	31	1.79
23765461--23765631	29	5.8	28	80	10	157	35	2	25	36	1.69
23765440--23765612	29	5.9	29	77	13	158	34	2	26	36	1.71
23765440--23765616	59	3.0	59	80	10	202	35	3	25	36	1.73
23765473--23765631	30	5.4	29	76	10	137	35	2	23	38	1.69
23766675--23766739	19	3.3	19	77	12	76	36	1	3	58	1.23
23767419--23767496	17	4.6	17	79	6	86	56	6	1	35	1.33
23768120--23768167	17	2.7	18	75	15	55	47	0	2	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23776287--23776352	27	2.4	27	92	0	105	34	7	10	46	1.67
23787179--23787221	2	21.5	2	100	0	86	0	48	0	51	1.00
23791980--23792014	17	2.1	17	94	0	61	42	22	22	11	1.85
23791998--23792256	41	6.3	40	78	4	216	33	18	27	20	1.96
23792002--23792238	123	1.9	123	83	1	305	31	18	29	21	1.97
23792725--23792804	40	2.0	40	100	0	160	30	15	7	47	1.72
23793975--23794517	58	9.4	58	85	3	625	33	2	30	33	1.70
23793976--23794514	173	3.1	169	84	6	647	33	2	30	33	1.70
23794149--23794456	28	10.7	28	68	21	131	34	1	29	34	1.66
23795435--23795469	12	2.9	12	86	0	52	31	8	2	57	1.44
23796210--23796266	6	9.8	6	77	7	55	50	5	0	43	1.24
23796210--23796265	17	3.2	17	82	9	69	50	5	0	44	1.25
23796208--23796266	23	2.6	23	83	5	66	52	5	0	42	1.23
23796235--23796285	17	2.8	18	88	5	68	56	5	3	33	1.42
23796610--23797458	92	9.2	92	95	1	1499	37	15	12	34	1.85
23809094--23809564	58	8.3	58	83	8	497	33	3	29	32	1.75
23809398--23809562	30	5.8	28	72	15	122	31	3	32	33	1.73
23809273--23809564	108	2.6	108	85	6	356	33	3	30	33	1.74
23809387--23809528	28	4.9	30	71	17	120	32	2	30	33	1.72
23810651--23810685	12	2.9	12	86	0	52	31	8	2	57	1.44
23811423--23811479	6	9.8	6	77	7	55	50	5	0	43	1.24
23811423--23811478	17	3.2	17	82	9	69	50	5	0	44	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23811421--23811479	23	2.6	23	83	5	66	52	5	0	42	1.23
23811448--23811498	17	2.8	18	88	5	68	56	5	3	33	1.42
23812578--23812741	41	4.0	40	82	4	193	41	18	19	20	1.91
23820386--23820418	17	2.0	17	88	5	50	30	6	9	54	1.56
23820482--23820728	125	2.0	125	93	0	422	33	17	12	35	1.88
23832328--23832394	21	3.2	21	78	16	75	67	2	1	28	1.14
23833497--23833555	26	2.3	26	100	0	118	44	6	10	38	1.65
23840926--23841014	30	2.9	30	75	20	87	56	4	20	19	1.59
23842372--23842474	30	3.4	29	70	10	82	35	1	29	33	1.69
23842335--23842476	59	2.4	61	85	4	193	33	3	31	31	1.75
23842455--23842626	30	5.7	30	85	3	222	35	2	24	37	1.68
23842367--23842621	59	4.3	60	81	8	218	36	1	25	36	1.68
23844275--23844330	27	2.2	26	84	9	71	16	16	28	39	1.89
23844286--23844330	14	3.3	13	82	17	56	15	15	28	40	1.88
23844381--23844413	17	1.9	17	100	0	66	54	9	0	36	1.32
23844423--23844468	18	2.6	18	82	6	58	50	2	6	41	1.40
23844399--23844453	24	2.3	24	80	0	65	49	3	3	43	1.37
23844383--23844478	42	2.3	41	81	8	106	51	3	4	41	1.37
23845898--23846011	20	5.6	19	75	10	93	56	13	11	19	1.67
23845945--23846021	21	3.7	21	79	6	84	54	12	9	23	1.66
23845907--23846020	42	2.8	41	85	5	142	54	12	11	21	1.69
23847430--23847482	20	2.7	19	80	8	61	67	3	3	24	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23847530--23847554	9	2.8	9	100	0	50	72	0	0	28	0.86
23852378--23852481	31	3.4	31	71	10	106	50	4	2	41	1.38
23860213--23860241	14	2.0	15	93	6	51	6	27	6	58	1.50
23862049--23862081	15	2.1	16	88	5	50	78	0	21	0	0.75
23865888--23865939	20	2.6	20	84	9	70	40	0	17	42	1.49
23865880--23865946	20	3.4	19	71	17	55	40	0	16	43	1.48
23866290--23866377	46	1.9	46	88	0	131	40	19	7	31	1.80
23870478--23870551	21	3.8	20	73	8	62	44	2	12	40	1.56
23870695--23870742	23	2.0	24	84	4	62	31	16	4	47	1.65
23876676--23876724	24	2.0	24	84	0	62	42	6	0	51	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120