genome.fa.s5.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  59  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17553140--17553201	31	2.0	31	100	0	124	48	12	12	25	1.77
17558725--17558759	14	2.5	15	90	9	56	42	0	0	57	0.99
17558725--17558753	14	2.1	14	100	0	58	44	0	0	55	0.99
17559345--17559944	307	2.0	308	91	3	985	33	17	12	36	1.87
17559686--17561824	852	2.5	844	84	4	2746	34	16	12	36	1.86
17562994--17563032	19	2.1	19	100	0	78	20	30	10	38	1.86
17567721--17567819	49	2.1	48	88	7	150	36	9	10	44	1.70
17570713--17571067	30	12.1	29	67	15	140	34	3	29	33	1.73
17570726--17571098	59	6.4	59	85	3	504	35	2	29	32	1.72
17570726--17571098	117	3.2	114	85	5	496	35	2	29	32	1.72
17571225--17571566	162	2.1	162	90	0	531	42	13	18	26	1.87
17571985--17572029	11	4.0	11	80	13	56	0	20	2	77	0.87
17571992--17572035	22	2.0	23	90	4	72	2	15	4	77	1.04
17572289--17572335	3	15.3	3	78	12	51	36	0	0	63	0.94
17572289--17572372	16	4.5	18	69	27	68	38	3	0	58	1.16
17573062--17573112	17	3.0	16	82	8	57	52	5	1	39	1.37
17573064--17573112	18	2.8	18	81	9	57	53	4	2	40	1.32
17577984--17578022	16	2.4	16	86	0	51	46	23	17	12	1.83
17577249--17578257	336	3.0	337	91	0	1608	36	23	11	29	1.90
17583148--17584012	442	2.0	438	93	2	1450	34	13	12	39	1.83
17585524--17585616	12	8.0	11	68	14	53	43	3	2	51	1.29
17585523--17585605	6	13.8	6	72	17	66	40	2	2	54	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17585522--17585604	17	5.0	17	85	10	100	39	2	2	55	1.26
17585546--17585604	31	1.9	31	92	0	100	38	3	1	55	1.26
17586393--17586430	13	2.9	13	92	0	58	55	2	0	42	1.14
17587164--17587227	33	2.0	32	85	8	87	15	15	7	60	1.56
17587551--17587622	29	2.5	28	82	10	83	38	23	1	36	1.64
17587532--17587659	29	4.3	30	74	14	81	36	25	1	36	1.66
17587580--17587807	59	3.9	59	89	0	341	32	31	3	32	1.75
17587580--17587803	29	7.6	28	72	23	151	33	30	3	33	1.74
17587580--17587807	118	1.9	117	91	2	377	32	31	3	32	1.75
17587640--17587832	29	6.7	28	73	18	128	31	32	5	30	1.80
17599962--17600638	76	9.1	76	90	5	1030	32	16	18	32	1.93
17600573--17600721	40	3.5	39	73	21	145	36	15	16	31	1.90
17600556--17600729	91	1.9	91	96	0	321	35	16	16	31	1.92
17600985--17601061	6	12.8	6	72	14	61	40	1	2	55	1.22
17600998--17601060	17	3.9	16	80	16	76	38	1	1	58	1.17
17600992--17601054	11	5.9	11	76	14	60	38	1	1	58	1.17
17601849--17601886	13	2.9	13	92	0	58	55	2	0	42	1.14
17603010--17603086	29	2.6	30	82	10	88	38	24	1	35	1.64
17603011--17603258	59	4.2	57	87	5	302	33	27	3	35	1.75
17603069--17603258	30	6.4	30	67	24	111	32	28	4	35	1.76
17603039--17603258	118	1.9	118	93	0	377	32	28	3	35	1.75
17603068--17603235	29	5.7	28	69	25	107	32	29	4	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17605628--17607167	770	2.0	763	86	3	2148	34	12	13	39	1.83
17606930--17606972	20	2.2	19	87	4	59	25	2	9	62	1.37
17606930--17606985	22	2.7	21	86	5	69	28	1	8	60	1.37
17606957--17607571	309	2.0	306	92	2	1036	33	16	12	37	1.86
17612286--17612462	51	3.5	50	89	6	248	30	22	14	32	1.93
17612329--17612472	51	2.8	51	96	1	261	28	22	15	34	1.94
17622536--17623182	337	1.9	337	88	0	963	35	21	12	29	1.91
17626058--17626360	30	10.1	30	76	11	212	34	1	27	36	1.67
17626058--17626340	89	3.1	89	79	7	286	33	1	27	37	1.66
17626334--17626390	30	1.9	30	82	7	71	38	3	24	33	1.73
17627893--17627934	7	6.3	7	81	10	52	50	0	0	50	1.00
17627888--17627929	19	2.2	19	95	0	75	57	0	0	42	0.99
17629877--17630218	30	11.5	29	84	7	404	40	25	1	33	1.63
17629877--17630218	59	5.7	59	83	8	417	40	25	1	33	1.63
17629877--17630210	89	3.7	89	85	4	442	39	25	1	33	1.64
17630531--17631123	321	1.8	321	88	0	900	32	18	16	33	1.93
17642373--17642945	39	14.8	37	71	14	302	23	32	20	24	1.98
17642310--17642701	77	5.1	77	79	9	264	22	31	20	25	1.98
17642405--17642966	78	7.2	77	83	5	466	23	32	19	24	1.97
17642368--17642890	117	4.5	115	74	10	339	22	33	20	24	1.97
17642323--17642743	194	2.2	194	84	1	540	23	32	19	25	1.98
17642332--17642815	194	2.5	193	82	4	476	22	32	19	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17642519--17642972	156	2.9	156	88	1	651	23	33	19	23	1.97
17645145--17645434	30	9.7	30	84	3	336	36	25	2	34	1.71
17645139--17645417	90	3.1	90	88	3	377	36	26	2	34	1.71
17646702--17646877	93	1.9	95	85	4	250	40	11	11	36	1.77
17648336--17648452	51	2.3	51	82	10	132	32	11	11	43	1.78
17648398--17649960	796	2.0	792	82	5	1924	34	15	12	37	1.85
17649233--17650790	833	1.9	840	83	5	2067	35	14	12	37	1.85
17650917--17651348	224	1.9	224	84	3	575	34	21	12	31	1.90
17651125--17652903	848	2.1	833	84	4	2304	34	15	12	36	1.86
17652131--17653664	769	2.0	770	86	5	2140	33	14	14	37	1.86
17655040--17655099	5	11.2	5	76	13	57	35	23	3	38	1.71
17659576--17659605	12	2.5	12	88	0	51	10	13	0	76	1.01
17660032--17660081	26	1.9	26	84	8	66	70	4	2	24	1.15
17662409--17662457	24	2.0	24	84	0	62	26	24	24	24	2.00
17663379--17663433	6	9.2	6	100	0	110	83	0	0	16	0.64
17670399--17670468	29	2.4	29	87	0	95	21	27	27	24	1.99
17674026--17674108	38	2.2	39	84	4	114	43	21	14	20	1.87
17683193--17683275	29	2.9	29	88	0	121	22	30	25	21	1.99
17687284--17687311	14	2.0	14	100	0	56	21	14	28	35	1.92
17688917--17688950	15	2.3	15	89	0	50	0	38	0	61	0.96
17700038--17700121	37	2.2	38	85	6	118	32	9	25	33	1.88
17700152--17700224	37	1.9	38	94	2	130	17	19	35	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17713782--17713869	37	2.4	36	81	5	97	28	29	21	20	1.98
17715485--17715515	14	2.3	14	94	5	55	29	25	9	35	1.88
17715941--17715965	6	4.2	6	100	0	50	64	16	0	20	1.30
17723787--17723829	18	2.3	18	88	4	59	13	18	11	55	1.68
17724972--17725018	23	2.0	23	95	0	85	21	25	29	23	1.99
17725990--17726020	14	2.3	14	94	5	55	29	25	9	35	1.88
17730119--17730210	37	2.5	37	80	1	114	28	34	18	18	1.95
17753026--17753069	21	2.1	21	83	8	54	0	34	0	65	0.93
17760953--17760980	14	2.0	14	100	0	56	50	7	14	28	1.69
17768702--17768726	13	1.9	13	100	0	50	16	16	24	44	1.86
17780466--17780516	19	2.6	20	81	3	59	15	7	15	60	1.56
17781073--17781125	9	5.5	10	75	20	51	81	0	16	1	0.79
17781073--17781123	18	2.8	18	85	8	68	80	0	17	1	0.81
17784048--17784261	57	3.8	57	88	1	286	20	15	12	51	1.75
17784048--17784262	29	7.6	29	82	6	242	20	15	12	52	1.74
17784678--17784776	45	2.2	45	81	0	117	35	7	18	39	1.78
17784787--17784957	36	4.8	36	83	2	211	31	4	19	44	1.71
17784785--17784955	72	2.4	72	86	3	238	32	4	19	43	1.71
17786790--17787056	43	6.3	43	88	1	331	27	26	16	29	1.97
17786798--17787056	85	3.0	85	84	2	358	27	25	16	30	1.97
17787332--17787456	66	1.9	66	83	0	160	17	24	16	41	1.89
17795921--17796060	42	3.4	41	80	7	151	20	25	15	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17797361--17797481	40	2.9	42	85	6	165	16	23	15	44	1.86
17797530--17798414	23	38.3	23	84	1	1090	45	13	5	34	1.67
17800752--17800833	41	2.0	42	85	2	112	56	21	9	12	1.65
17806620--17806665	20	2.3	19	78	10	56	78	10	0	10	0.97
17808437--17808741	30	10.3	30	75	10	218	32	5	25	37	1.78
17808437--17808711	90	3.1	87	80	8	279	32	4	25	37	1.77
17808437--17808711	60	4.6	60	81	5	258	32	4	25	37	1.77
17808517--17808741	87	2.6	87	81	9	217	33	5	23	37	1.78
17809796--17809848	24	2.3	22	84	12	70	9	3	37	49	1.53
17809908--17809950	12	3.6	12	81	12	52	76	2	0	20	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120