genome.fa.s5.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  120  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37025485--37025558	32	2.2	33	83	4	87	60	5	10	22	1.50
37031168--37031218	24	2.1	24	100	0	102	56	7	11	23	1.61
37033068--37033114	24	2.0	24	91	0	76	53	6	12	27	1.63
37058565--37058612	3	16.0	3	91	8	80	68	0	31	0	0.90
37075343--37075375	15	2.2	15	94	0	57	84	0	15	0	0.61
37086320--37086345	3	8.7	3	100	0	52	69	0	30	0	0.89
37088337--37088374	13	2.8	14	84	8	60	47	5	5	42	1.48
37088716--37088771	20	2.9	19	84	5	69	55	5	0	39	1.23
37088705--37088771	20	3.4	19	76	17	66	56	4	0	38	1.19
37088727--37088826	27	3.7	26	75	12	85	55	2	2	41	1.23
37088718--37088827	19	5.9	18	76	14	84	55	1	1	40	1.21
37094927--37095046	58	2.1	58	92	3	197	46	22	0	30	1.52
37099238--37099276	17	2.2	18	90	4	62	33	2	0	64	1.08
37100506--37100598	30	3.3	28	76	14	93	25	8	10	54	1.63
37106116--37106157	21	2.0	20	86	4	57	54	9	14	21	1.68
37127796--37127830	18	1.9	18	88	0	52	28	22	0	48	1.51
37132487--37132564	41	1.9	41	82	10	97	61	1	0	37	1.04
37134628--37134692	31	2.1	31	85	5	87	47	10	7	33	1.67
37138082--37138130	20	2.6	18	80	9	53	53	0	0	46	1.00
37138083--37138137	26	2.0	28	82	6	69	50	0	1	47	1.11
37141629--37141754	39	3.3	39	63	18	102	12	25	15	46	1.82
37141611--37141828	75	2.9	75	95	1	384	12	27	15	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37145211--37145425	52	4.3	52	75	18	215	36	23	14	25	1.93
37145639--37145675	3	12.3	3	100	0	74	64	0	0	35	0.94
37156394--37156419	13	2.0	13	100	0	52	23	7	15	53	1.67
37165168--37165192	6	4.2	6	100	0	50	20	48	0	32	1.50
37180477--37180506	15	2.0	15	93	0	51	13	16	26	43	1.85
37188860--37188888	6	4.8	6	100	0	58	51	0	34	13	1.42
37191042--37191118	17	4.4	17	76	15	77	42	0	3	53	1.19
37191042--37191149	6	18.0	6	75	14	89	48	0	2	48	1.22
37191058--37191118	31	2.0	31	86	0	86	42	0	4	52	1.23
37191180--37191211	14	2.3	14	100	0	64	34	34	12	18	1.89
37194602--37194726	23	5.3	23	86	3	153	12	24	21	41	1.88
37194602--37194752	23	6.4	24	83	9	145	12	24	21	41	1.87
37197727--37197791	13	5.0	13	76	10	62	38	15	4	41	1.68
37197727--37197791	26	2.5	26	80	9	78	38	15	4	41	1.68
37201691--37201753	24	2.6	24	87	0	90	49	11	15	23	1.77
37208725--37209988	315	4.0	315	99	0	2476	30	14	17	37	1.90
37208725--37209988	629	2.0	630	99	0	2476	30	14	17	37	1.90
37216928--37217141	105	2.0	105	97	0	401	35	10	22	30	1.88
37228567--37228616	22	2.3	23	79	10	59	54	0	18	28	1.44
37228630--37228666	18	2.1	18	89	0	56	29	10	10	48	1.72
37237977--37238010	18	1.9	18	88	5	52	50	0	0	50	1.00
37244854--37244909	25	2.2	25	84	6	69	58	19	5	16	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37244866--37244924	25	2.3	25	79	2	64	55	27	5	11	1.56
37245056--37245106	19	2.6	20	81	12	61	58	21	7	11	1.58
37245056--37245113	19	3.0	19	76	19	57	58	24	6	10	1.55
37246373--37246698	163	2.0	163	95	0	589	28	12	12	46	1.79
37249525--37249626	50	2.0	50	88	0	150	22	12	23	41	1.88
37250936--37251857	7	132.9	7	86	4	391	2	12	50	34	1.55
37250964--37252039	14	76.7	14	82	8	400	2	14	50	33	1.55
37251069--37251109	22	1.9	21	90	5	64	0	9	56	34	1.32
37251069--37251868	21	37.9	21	80	8	436	2	13	50	34	1.53
37251226--37251994	7	110.4	7	92	4	669	1	14	49	33	1.54
37251992--37252039	8	6.2	8	90	9	82	0	12	62	25	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120

The End!