genome.fa.s5.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  44  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12162446--12162615	4	40.5	4	66	22	50	71	6	4	17	1.25
12162544--12162581	15	2.5	15	91	8	60	73	5	0	21	1.02
12162626--12162696	29	2.4	30	77	11	76	61	1	11	25	1.37
12162753--12162782	15	1.9	16	93	6	53	73	0	0	26	0.84
12171545--12171569	13	1.9	13	100	0	50	48	4	0	48	1.20
12182729--12182868	50	2.8	50	81	5	158	38	13	11	36	1.81
12183973--12184027	25	2.2	25	83	6	67	74	5	5	14	1.18
12184034--12184078	23	2.0	23	90	0	72	68	4	6	20	1.29
12187034--12187141	51	2.1	50	82	1	126	39	11	14	34	1.82
12187513--12187556	23	2.0	21	83	12	54	43	20	20	15	1.88
12187628--12187705	36	2.2	36	84	6	97	37	21	15	25	1.93
12190048--12190135	35	2.5	35	84	0	113	40	31	11	15	1.83
12191806--12191844	18	2.2	18	85	0	51	12	17	0	69	1.19
12194721--12194759	21	1.9	20	85	15	53	43	12	5	38	1.65
12201572--12201628	20	2.8	20	84	10	62	43	1	12	42	1.52
12203006--12203198	51	3.8	51	90	0	287	32	22	13	31	1.93
12206481--12206532	12	4.4	11	73	17	50	3	19	1	75	1.06
12220663--12220921	51	5.1	51	81	2	304	22	18	26	32	1.97
12220663--12220921	26	10.1	26	72	8	199	22	18	26	32	1.97
12227888--12228057	25	6.7	25	77	6	126	22	15	28	33	1.95
12227921--12228057	51	2.7	50	81	8	159	21	17	29	31	1.96
12228026--12228097	37	1.9	37	97	0	135	19	18	30	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12228896--12228952	24	2.4	24	93	0	105	24	26	26	22	2.00
12239166--12239194	8	3.6	8	100	0	58	27	0	37	34	1.57
12240867--12240979	47	2.4	48	83	1	156	25	16	23	33	1.96
12247359--12247415	15	3.8	15	73	0	60	22	19	36	21	1.95
12247358--12247423	30	2.2	30	97	0	123	25	18	36	19	1.94
12247377--12247423	15	3.1	15	75	0	58	25	17	38	19	1.92
12249175--12249206	16	1.9	17	93	6	57	53	9	31	6	1.58
12250589--12250652	32	2.0	32	93	0	110	42	20	14	23	1.88
12251337--12251370	17	1.9	17	88	5	50	5	17	8	67	1.37
12264754--12264836	27	2.9	30	75	10	91	25	16	10	46	1.79
12264754--12264815	30	2.2	29	82	8	74	24	17	11	46	1.81
12264754--12264864	58	1.9	58	83	5	145	25	17	10	46	1.80
12265085--12265152	31	2.2	31	86	2	91	42	8	19	29	1.81
12265522--12265564	21	2.0	21	100	0	86	34	13	23	27	1.93
12266082--12266130	20	2.5	19	83	6	53	59	4	8	28	1.45
12266191--12266234	20	2.2	20	84	4	54	65	2	0	31	1.05
12269878--12270270	79	5.0	79	89	2	549	24	17	25	32	1.97
12269887--12270232	39	8.8	40	67	14	173	24	17	26	30	1.97
12280052--12280202	68	2.2	68	93	1	257	40	15	14	29	1.87
12283939--12283963	7	3.6	7	100	0	50	0	44	0	56	0.99
12297526--12297583	28	2.1	28	96	0	107	36	15	10	37	1.82
12330053--12330187	66	2.0	68	84	5	177	17	12	27	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12330268--12330446	23	7.8	23	89	0	268	34	5	12	47	1.64
12330439--12330486	10	4.7	10	86	2	69	39	2	20	37	1.65
12330466--12330645	68	2.9	61	81	8	168	36	6	18	39	1.76
12330507--12330553	20	2.3	21	85	10	71	36	6	19	38	1.77
12330425--12330600	68	2.6	68	87	0	262	38	5	17	38	1.72
12330516--12330554	10	3.8	10	86	3	51	38	5	17	38	1.72
12330534--12330656	58	2.1	58	83	1	149	34	7	19	38	1.80
12333306--12333335	15	2.0	15	93	0	51	40	16	33	10	1.82
12345747--12345806	23	2.8	21	73	9	57	71	1	23	3	1.10
12349386--12349464	24	3.3	24	100	0	158	54	7	12	25	1.64
12351976--12352013	12	2.9	13	81	14	51	21	2	0	76	0.91
12351976--12352027	21	2.5	22	84	6	63	19	1	3	75	1.06
12356742--12356784	19	2.1	22	87	12	65	44	0	0	55	0.99
12356745--12356846	29	3.4	29	88	8	152	50	0	0	49	1.07
12356745--12356853	30	3.7	29	80	15	116	48	0	0	50	1.07
12357449--12357480	7	4.6	7	100	0	64	46	12	0	40	1.42
12362097--12362158	30	2.1	30	84	6	81	51	11	0	37	1.38
12362601--12362657	29	2.0	29	83	13	73	49	7	3	40	1.47
12369026--12369109	41	2.0	41	95	0	150	36	10	20	32	1.87
12369923--12370058	52	2.6	52	90	2	202	33	24	14	27	1.94
12377098--12377232	52	2.6	52	87	0	189	34	25	14	25	1.94
12379701--12379766	26	2.8	23	76	17	64	19	18	1	60	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12380391--12380474	31	2.7	31	79	1	98	38	3	9	48	1.53
12381192--12381243	16	3.2	16	79	17	54	42	0	0	57	0.98
12389515--12389553	19	2.2	17	86	9	51	0	41	2	56	1.13
12396061--12396218	79	2.0	78	88	1	235	27	14	18	39	1.90
12400852--12400919	6	11.2	6	80	7	57	5	16	1	76	1.05
12402487--12402521	15	2.2	16	90	5	54	5	37	14	42	1.69
12403747--12403901	79	2.0	78	91	3	249	28	14	18	38	1.90
12404175--12404277	48	2.1	48	89	0	152	47	14	10	27	1.77
12405240--12405406	80	2.1	81	98	1	327	35	7	16	40	1.76
12405836--12406244	206	2.0	205	96	0	746	30	10	23	35	1.88
12408498--12408600	3	37.0	3	77	13	87	2	30	0	66	1.06
12408495--12408575	11	7.6	11	78	12	89	1	33	0	65	1.01
12411092--12411167	11	6.8	11	71	24	61	42	1	1	55	1.16
12411138--12411190	20	2.7	19	85	8	63	39	1	1	56	1.21
12411238--12411285	18	2.8	17	77	3	60	43	2	2	52	1.24
12435476--12435517	20	2.1	20	95	0	75	23	38	9	28	1.86
12439374--12439416	7	6.1	7	83	0	50	13	46	4	34	1.65
12439376--12439416	14	2.9	14	92	0	64	14	46	4	34	1.66
12439374--12439416	21	2.0	21	86	8	61	13	46	4	34	1.65
12447179--12447333	36	4.3	36	72	9	127	32	14	23	29	1.95
12447224--12447348	36	3.5	36	80	4	135	31	16	23	28	1.96
12448705--12448764	29	2.1	28	81	9	68	45	21	10	23	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12455245--12455416	36	4.8	36	74	4	105	28	16	26	29	1.97
12459013--12459065	20	2.7	20	96	0	97	45	3	13	37	1.61
12461270--12461311	21	2.0	22	86	9	61	57	0	2	40	1.12
12476366--12476395	5	6.0	5	92	0	51	23	60	16	0	1.36
12483179--12483289	30	3.7	30	80	9	93	36	20	6	36	1.78
12483191--12483336	30	4.9	30	81	4	127	34	20	4	39	1.74
12483265--12483347	29	2.8	29	87	3	103	32	16	4	45	1.69
12483706--12483892	105	1.8	102	81	3	230	30	13	18	37	1.90
12489682--12489873	49	3.9	48	72	9	138	36	15	27	20	1.92
12489918--12490033	42	2.8	42	84	7	130	40	15	25	18	1.90
12490176--12491232	78	13.5	78	86	2	1201	33	23	17	25	1.96
12491067--12491230	42	3.9	41	85	9	224	29	25	18	26	1.98
12491068--12491239	84	2.0	84	91	2	274	29	26	18	26	1.98
12492928--12492994	30	2.2	28	80	19	82	34	17	11	35	1.87
12492940--12493008	30	2.3	30	90	7	113	28	23	11	36	1.90
12493000--12493066	29	2.3	29	90	7	109	28	23	2	44	1.68
12494715--12494831	26	4.5	26	86	3	139	54	8	3	33	1.47
12494721--12494827	39	2.8	38	79	12	112	55	8	3	32	1.48
12494718--12494810	13	7.3	12	78	14	98	56	8	2	32	1.41
12495012--12495054	15	2.8	16	83	13	54	44	0	0	55	0.99
12495008--12495065	24	2.4	24	88	5	82	46	0	1	51	1.11
12495012--12495104	16	5.8	16	66	19	59	46	1	3	49	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12498293--12498666	69	5.4	69	85	1	455	28	23	25	22	1.99
12498299--12498674	207	1.8	208	84	1	522	28	23	24	22	1.99
12503417--12503477	29	2.1	29	96	0	113	75	0	18	6	1.01
12514224--12514296	21	3.5	21	84	0	92	24	16	24	34	1.95
12518239--12518393	28	5.5	28	76	4	89	38	22	11	27	1.89
12521864--12521896	16	2.0	17	88	5	50	33	12	3	51	1.54
12523347--12523401	24	2.3	24	80	0	65	30	21	16	30	1.95
12523359--12523412	24	2.2	24	86	0	72	33	24	18	24	1.97
12523405--12523531	27	4.7	27	83	1	146	37	18	18	25	1.93
12527588--12527690	24	4.3	24	87	0	143	29	25	21	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120