genome.fa.s5.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  91  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26236816--26236858	23	1.9	22	85	4	59	46	30	0	23	1.52
26244301--26244371	21	3.2	22	82	6	81	12	9	11	66	1.46
26244301--26244371	23	3.2	23	82	8	74	12	9	11	66	1.46
26244299--26244372	11	6.6	11	72	14	53	12	9	13	64	1.49
26244410--26244496	24	3.8	23	74	10	88	6	3	20	68	1.27
26244404--26244514	44	2.5	44	78	13	106	8	2	20	68	1.28
26245722--26245774	24	2.3	22	78	18	54	49	1	0	49	1.12
26250047--26250095	24	2.0	24	88	0	71	42	26	12	18	1.85
26256617--26256797	61	3.0	60	83	6	197	30	18	14	36	1.91
26256655--26256797	60	2.3	61	84	8	191	34	16	11	37	1.85
26256703--26256904	106	1.9	108	88	4	311	32	22	11	33	1.90
26256806--26256932	62	2.1	60	89	2	191	28	24	14	32	1.95
26260291--26260339	12	3.8	12	75	19	53	51	0	8	40	1.32
26260471--26260973	83	6.1	83	88	3	696	38	4	4	52	1.40
26260471--26261553	166	6.7	166	90	4	1604	38	4	4	51	1.43
26260924--26261036	31	3.5	30	69	14	82	42	3	2	51	1.33
26260897--26261039	66	2.2	66	92	0	232	39	3	4	52	1.40
26260962--26261553	83	7.1	83	95	0	1033	38	5	4	51	1.45
26260962--26261553	248	2.4	249	95	0	1051	38	5	4	51	1.45
26260471--26261536	563	1.9	560	91	2	1764	38	4	4	51	1.44
26261717--26261773	20	2.8	19	81	5	60	12	29	28	29	1.93
26263958--26264055	30	3.3	30	77	8	92	26	7	6	60	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26264940--26265161	122	1.8	120	86	5	322	37	18	17	26	1.92
26264940--26265156	61	3.6	61	86	3	289	36	18	17	27	1.93
26265159--26265243	43	2.0	44	88	2	127	38	16	15	29	1.89
26265321--26265360	18	2.2	19	95	4	73	22	10	5	62	1.46
26270408--26270480	37	2.0	37	86	5	103	45	8	4	42	1.53
26270576--26270883	147	2.1	148	96	0	564	45	15	22	16	1.85
26273412--26273643	27	8.6	27	90	0	250	30	37	15	15	1.90
26281784--26281825	21	2.0	21	100	0	84	42	14	9	33	1.78
26293853--26293885	15	2.2	15	100	0	66	54	6	15	24	1.63
26294456--26294496	14	2.7	15	85	14	50	36	2	2	58	1.24
26294600--26294643	20	2.4	17	88	11	61	27	4	2	65	1.23
26294600--26294690	18	4.8	18	75	17	69	28	4	2	64	1.24
26294601--26294713	59	1.9	60	82	12	144	29	3	2	64	1.24
26294646--26294705	18	3.3	18	72	21	54	31	3	3	61	1.28
26304340--26304390	20	2.5	20	78	12	68	62	0	0	37	0.95
26304606--26304631	3	8.7	3	100	0	52	30	0	0	69	0.89
26311241--26311289	26	1.9	25	84	12	64	65	2	0	32	1.04
26312007--26312040	17	2.0	17	94	0	59	0	44	0	55	0.99
26316847--26316968	59	2.0	61	88	3	185	41	4	6	46	1.51
26319127--26319181	25	2.2	25	83	3	76	14	18	1	65	1.36
26320480--26320526	7	6.7	7	100	0	94	29	14	55	0	1.40
26333766--26333852	31	2.8	30	77	8	95	33	4	13	48	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26335930--26335968	21	1.9	20	84	5	51	25	15	7	51	1.70
26339206--26339253	17	2.8	17	78	12	62	60	2	0	37	1.09
26339648--26339693	18	2.5	18	92	3	74	41	0	0	58	0.98
26342972--26343157	51	3.6	51	88	5	259	29	23	13	33	1.93
26346038--26346273	52	4.5	52	89	2	314	36	25	14	23	1.93
26356670--26356705	18	1.9	19	88	5	56	75	0	11	13	1.06
26357832--26358033	29	7.0	28	72	17	110	35	25	3	35	1.73
26357828--26358005	88	2.0	88	82	10	213	35	26	2	35	1.71
26358189--26358223	14	2.6	14	90	4	54	20	5	2	71	1.19
26364666--26364700	11	3.3	11	84	8	54	82	2	0	14	0.77
26364661--26364700	21	2.0	21	95	5	73	82	5	0	12	0.82
26365606--26365682	26	3.5	20	71	25	57	79	0	15	5	0.91
26365626--26365687	7	8.1	7	73	16	52	79	0	17	3	0.87
26365609--26365686	32	2.5	30	86	12	97	79	0	15	5	0.90
26365619--26365679	26	2.4	26	86	8	81	78	0	18	3	0.88
26365626--26365687	15	4.1	14	73	17	52	79	0	17	3	0.87
26366595--26366859	50	5.3	50	72	9	143	33	15	32	18	1.92
26366625--26366951	148	2.2	149	79	6	342	33	17	31	17	1.93
26366625--26366951	50	6.6	50	73	7	229	33	17	31	17	1.93
26367375--26368029	39	16.8	39	68	7	204	23	31	19	25	1.98
26367448--26367902	78	5.8	76	75	11	321	23	30	20	25	1.98
26367409--26367813	194	2.1	195	80	7	441	24	32	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26367507--26367928	156	2.7	155	83	1	504	24	31	19	24	1.98
26367597--26368009	78	5.3	78	80	4	352	23	31	19	25	1.98
26367409--26368019	117	5.2	116	73	7	473	23	31	19	25	1.98
26370169--26370344	29	6.1	29	78	3	160	31	28	5	35	1.79
26370324--26370397	28	2.5	28	79	12	78	33	27	4	35	1.76
26370511--26370545	14	2.6	14	90	4	54	22	5	0	71	1.07
26371932--26372031	35	2.8	35	75	18	107	45	1	1	53	1.14
26390103--26390147	21	2.1	22	91	4	74	46	0	0	53	1.00
26390102--26390157	19	2.8	19	82	12	76	51	0	0	48	1.00
26390797--26390846	23	2.1	23	85	3	64	54	26	0	20	1.45
26391282--26391327	17	2.7	17	82	0	65	23	2	2	71	1.08
26407499--26407561	13	4.9	13	78	1	65	38	0	17	44	1.49
26407948--26407981	17	1.9	17	88	5	50	38	11	2	47	1.55
26409315--26409690	189	2.0	189	100	0	752	32	20	14	32	1.92
26409835--26409869	17	2.1	16	89	5	52	68	0	2	28	1.04
26413509--26413565	13	4.4	13	78	12	55	17	12	21	49	1.79
26413510--26413558	6	7.7	6	80	8	53	18	14	18	48	1.80
26413510--26413565	20	2.9	19	84	5	85	17	12	19	50	1.78
26421750--26421820	3	23.7	3	100	0	142	67	0	32	0	0.91
26421853--26421992	52	2.6	56	82	9	198	48	18	15	17	1.81
26422554--26422590	15	2.5	15	95	0	65	40	0	59	0	0.97
26422554--26422600	6	7.3	6	84	13	58	42	0	57	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26422702--26422742	21	2.0	21	95	0	73	34	24	17	24	1.96
26423140--26423221	34	2.4	34	89	0	128	43	2	10	42	1.53
26424991--26425055	26	2.5	26	70	12	60	46	3	0	50	1.17
26427380--26427426	23	2.1	22	88	7	69	53	0	8	38	1.32
26436606--26436641	3	12.0	3	100	0	72	33	0	0	66	0.92
26438007--26438051	11	4.1	11	88	0	63	17	2	11	68	1.29
26443661--26443686	12	2.2	12	100	0	52	23	0	0	76	0.78
26448202--26448240	16	2.6	16	88	8	55	15	5	15	64	1.46
26450307--26450343	19	1.9	19	88	0	56	18	29	24	27	1.98
26455558--26455626	34	2.1	34	81	8	79	28	1	17	52	1.53
26461985--26462028	21	2.1	21	87	4	63	52	2	0	45	1.13
26462678--26462744	31	2.1	31	86	2	89	37	16	11	34	1.85
26462826--26462870	23	2.0	21	84	16	56	26	0	6	66	1.16
26466019--26466089	17	4.2	17	85	0	97	42	4	1	52	1.29
26467255--26467304	23	2.2	23	92	0	82	20	26	44	10	1.82
26467912--26468312	59	6.8	59	80	7	333	30	24	4	40	1.75
26467943--26468273	30	11.1	30	68	12	164	30	25	4	40	1.74
26467912--26468287	118	3.2	116	81	4	396	30	25	3	40	1.74
26468230--26468342	30	3.8	28	70	24	79	32	24	7	35	1.83
26468210--26468374	29	5.6	28	67	23	74	32	24	7	35	1.83
26467999--26468342	177	1.9	176	80	10	389	30	25	4	39	1.74
26468206--26468370	59	2.8	61	81	7	171	31	24	7	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26471023--26471056	17	2.0	17	94	0	59	47	5	14	32	1.69
26474851--26474883	14	2.4	14	94	0	57	51	15	0	33	1.43
26475863--26475921	6	9.5	6	80	10	57	49	1	47	1	1.21
26476008--26476041	17	2.0	17	94	0	59	44	0	2	52	1.16
26476164--26476242	27	3.0	27	66	17	76	43	2	3	50	1.33
26476780--26476838	31	1.9	31	83	10	77	50	3	0	45	1.18
26479262--26479290	6	4.8	6	100	0	58	17	0	17	65	1.27
26479364--26479439	26	2.8	26	78	4	71	56	9	1	32	1.39
26482305--26482371	27	2.5	26	80	7	89	25	38	20	14	1.91
26482380--26482415	16	2.3	15	90	4	54	30	0	0	69	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120