genome.fa.s5.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  106  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30825704--30825758	24	2.3	24	87	0	74	27	14	10	47	1.78
30826522--30826576	15	3.8	15	69	9	51	41	3	1	52	1.29
30832562--30832596	18	1.9	18	88	0	52	65	8	2	22	1.34
30832788--30832849	19	3.2	20	86	11	85	29	1	3	66	1.17
30833022--30833055	11	3.2	11	87	4	52	52	17	2	26	1.58
30841145--30841188	3	15.0	3	95	4	81	31	0	34	34	1.58
30846710--30846754	19	2.4	19	85	7	56	40	2	4	53	1.33
30846746--30846784	20	2.0	20	84	0	51	46	2	2	48	1.29
30847022--30847117	46	2.1	46	90	0	147	30	8	16	44	1.77
30850948--30851018	31	2.3	31	80	0	79	22	21	21	35	1.96
30851045--30851212	58	2.9	57	80	5	185	38	20	17	23	1.93
30853874--30853915	21	2.0	21	85	0	57	38	0	4	57	1.20
30855333--30855439	29	3.6	28	67	18	65	38	1	27	32	1.68
30855343--30855686	59	5.9	59	85	4	437	35	2	28	34	1.70
30855373--30855685	117	2.7	117	89	2	459	34	2	28	34	1.71
30855417--30855713	30	10.1	29	70	24	173	34	3	27	35	1.72
30855651--30855743	31	3.0	30	80	10	82	31	4	22	41	1.73
30855680--30855743	31	2.0	32	84	3	85	29	4	18	46	1.69
30855337--30855712	117	3.2	113	82	8	391	35	2	27	34	1.71
30857530--30857580	26	1.9	27	88	11	79	15	17	25	41	1.89
30857530--30857581	13	3.9	13	85	10	70	15	17	25	42	1.88
30857643--30857708	18	3.6	18	82	9	80	50	3	3	43	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30858232--30858961	364	2.0	364	98	0	1397	23	18	23	34	1.96
30864726--30864776	24	2.1	24	96	0	93	15	13	29	41	1.86
30867413--30867470	29	1.9	30	82	6	73	37	12	5	44	1.64
30872133--30872308	58	3.0	57	76	8	165	42	19	15	22	1.89
30880510--30880574	29	2.2	30	84	10	82	58	6	3	32	1.38
30884312--30884371	29	2.0	30	84	12	79	55	3	6	35	1.43
30887622--30887658	18	2.1	18	100	0	74	43	10	5	40	1.63
30889007--30889106	11	8.9	11	81	8	103	43	0	2	55	1.11
30889007--30889123	17	6.9	17	80	10	123	42	0	2	54	1.14
30889007--30889124	28	4.2	29	87	9	156	43	0	2	54	1.14
30891831--30891874	22	2.0	23	90	4	72	25	9	6	59	1.53
30891986--30892036	25	2.0	27	88	7	79	41	1	5	50	1.37
30894032--30894073	16	2.6	16	78	14	50	71	9	0	19	1.13
30898517--30898929	30	13.9	30	82	4	417	35	23	1	39	1.65
30908099--30908138	19	2.0	20	86	13	57	12	2	5	80	0.98
30908099--30908138	18	2.1	20	86	9	57	12	2	5	80	0.98
30916148--30916195	14	3.4	14	80	11	53	25	18	31	25	1.98
30916157--30916196	14	2.9	14	92	0	62	22	22	32	22	1.98
30919243--30919280	14	2.7	14	87	0	58	44	0	13	42	1.43
30919713--30919749	19	1.9	19	88	0	56	51	0	0	48	1.00
30932105--30932347	30	8.1	30	87	5	339	37	23	4	34	1.74
30939001--30939033	16	1.9	18	88	11	52	30	3	18	48	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30943335--30943405	37	1.9	37	100	0	142	29	7	22	40	1.80
30946566--30946606	20	2.2	20	86	8	59	39	0	4	56	1.21
30955711--30955963	58	4.3	59	84	4	334	33	3	30	33	1.74
30955726--30955943	117	1.9	117	92	2	366	33	1	30	34	1.69
30956246--30956307	32	1.9	33	83	9	83	59	4	12	22	1.52
30957810--30957864	6	10.0	6	75	18	57	52	1	1	43	1.22
30957812--30957875	27	2.4	27	82	10	69	54	3	1	40	1.25
30957810--30957864	16	3.4	16	87	5	83	52	1	1	43	1.22
30960233--30960347	17	6.8	17	67	16	60	60	2	0	35	1.16
30966138--30966163	4	6.5	4	100	0	52	76	23	0	0	0.78
30971116--30971168	2	27.0	2	96	3	99	49	0	0	50	1.00
30973796--30973834	17	2.3	17	86	0	60	64	10	2	23	1.37
30974985--30975084	52	1.9	52	87	4	148	34	12	18	36	1.87
30975243--30975285	15	2.9	15	85	0	59	72	0	6	20	1.08
30978466--30978662	59	3.4	57	75	6	191	36	3	30	29	1.74
30978647--30978897	30	8.4	30	87	5	314	35	5	21	37	1.76
30978635--30978897	59	4.4	58	86	6	334	34	4	23	36	1.76
30979747--30979803	26	2.2	26	84	6	71	12	8	5	73	1.23
30980473--30980501	7	4.1	7	100	0	58	0	17	27	55	1.42
30980746--30980819	6	12.0	6	75	11	60	45	1	2	50	1.24
30980772--30980828	16	3.7	15	81	11	62	57	1	1	38	1.19
30980771--30980828	31	1.9	30	89	3	89	56	1	1	39	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30983072--30983145	6	12.7	6	70	16	57	39	2	1	56	1.22
30983072--30983145	17	4.2	17	81	11	87	39	2	1	56	1.22
30985001--30985152	30	5.0	30	77	10	148	37	22	3	36	1.71
30985131--30985321	29	6.7	29	69	15	114	30	25	3	39	1.73
30985131--30985373	58	4.3	56	77	12	191	30	27	3	38	1.74
30985155--30985372	58	3.9	57	80	8	218	29	27	3	38	1.74
30991492--30991516	13	1.9	13	100	0	50	0	28	0	72	0.86
30999507--30999533	3	9.0	3	100	0	54	66	0	0	33	0.92
31037626--31037670	12	3.6	13	85	5	58	17	6	0	75	1.01
31039953--31040002	26	1.9	26	91	0	82	38	22	4	36	1.73
31048604--31048657	20	2.8	20	71	15	51	37	0	0	62	0.95
31052860--31052884	12	2.1	12	100	0	50	16	52	8	24	1.70
31052856--31052926	27	2.6	27	80	4	81	19	46	4	29	1.69
31052873--31052927	15	3.9	15	72	13	53	20	45	3	30	1.68
31062706--31062793	43	2.0	43	93	4	151	29	15	13	40	1.86
31066768--31066855	30	2.9	30	88	3	106	37	1	23	37	1.63
31067419--31067443	9	2.8	9	100	0	50	12	0	0	88	0.53
31071763--31071824	22	2.8	22	82	7	72	29	1	6	62	1.29
31071757--31071861	53	2.0	51	83	5	129	27	2	7	61	1.37
31071778--31071880	54	1.9	53	84	2	134	29	3	6	60	1.40
31071778--31071901	54	2.3	53	81	2	131	29	5	7	58	1.48
31072326--31072383	23	2.5	23	77	5	64	65	1	3	29	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31072543--31072595	16	3.7	15	74	25	60	64	3	0	32	1.12
31072543--31072598	27	2.0	28	96	3	105	64	3	0	32	1.11
31082263--31082296	10	3.0	12	83	16	54	76	0	0	23	0.79
31088951--31088992	14	3.2	14	87	9	54	83	14	0	2	0.75
31093505--31093546	21	2.0	21	86	4	59	40	7	4	47	1.52
31094948--31094981	17	2.0	17	88	11	52	29	8	2	58	1.43
31095039--31095066	2	14.0	2	100	0	56	50	0	0	50	1.00
31097384--31097424	16	2.6	17	81	11	52	65	0	0	34	0.93
31110099--31110127	14	2.0	15	93	6	51	62	3	6	27	1.37
31115221--31115314	32	3.0	31	77	12	102	45	4	14	35	1.65
31128861--31128894	15	2.3	15	89	0	50	38	2	2	55	1.30
31129529--31129587	31	1.9	31	93	6	102	30	10	15	44	1.79
31129553--31129776	112	2.0	113	83	4	281	34	15	8	41	1.78
31130180--31130223	18	2.5	17	92	3	70	50	0	11	38	1.39
31131655--31131702	19	2.4	21	86	6	73	35	4	4	56	1.38
31138383--31138438	16	3.4	16	68	18	51	25	7	25	42	1.80
31138377--31138453	34	2.3	34	100	0	154	27	7	24	40	1.82
31138399--31138453	18	3.2	18	65	19	53	23	9	23	43	1.82
31143223--31143287	24	2.7	23	75	11	60	64	0	4	30	1.14
31145381--31145406	12	2.2	12	100	0	52	46	0	7	46	1.31
31145526--31145563	20	1.9	20	89	10	60	50	10	0	39	1.37
31147278--31147312	18	1.9	18	94	0	61	22	22	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31147275--31147320	18	2.3	20	78	17	60	30	23	26	19	1.98
31147296--31147424	63	2.0	63	87	0	186	28	24	23	23	1.99
31147252--31147424	15	10.9	15	74	10	96	28	24	22	23	1.99
31147219--31147388	81	2.1	81	92	2	279	30	22	21	24	1.99
31147594--31147621	2	14.0	2	100	0	56	50	0	0	50	1.00
31147621--31147658	2	19.0	2	100	0	76	0	0	50	50	1.00
31149864--31149903	21	1.9	21	84	0	53	35	22	20	22	1.96
31149863--31149932	35	2.0	35	85	0	95	37	24	17	21	1.94
31149950--31150077	24	5.3	24	73	5	107	21	21	28	27	1.99
31150761--31150802	22	2.0	20	86	13	59	40	11	2	45	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120