genome.fa.s5.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  89  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25655299--25655380	41	2.0	41	85	4	112	20	2	18	58	1.50
25655330--25655359	13	2.4	13	94	5	53	16	0	16	66	1.25
25655330--25655359	6	4.8	6	92	8	51	16	0	16	66	1.25
25664423--25664456	18	2.0	18	88	11	54	29	0	8	61	1.26
25664443--25664484	21	2.0	21	85	0	57	28	0	7	64	1.20
25666226--25666254	6	4.8	6	100	0	58	34	0	65	0	0.93
25669645--25669690	21	2.1	21	84	4	56	6	2	17	73	1.14
25670369--25670414	6	7.5	6	92	7	67	0	65	0	34	0.93
25676862--25676896	18	1.9	18	94	0	61	37	25	11	25	1.90
25676468--25676916	226	2.0	223	93	2	765	38	10	18	31	1.85
25677882--25677998	57	2.1	57	98	0	225	38	10	17	34	1.83
25678334--25678380	15	3.1	15	90	3	76	27	8	19	44	1.79
25679781--25680203	221	1.9	222	97	0	803	33	17	11	37	1.86
25685432--25685545	23	4.9	23	78	14	117	13	24	21	40	1.89
25686274--25686311	20	1.9	20	94	0	67	47	26	21	5	1.71
25686376--25686591	41	5.3	41	87	1	299	28	27	21	22	1.99
25691296--25691523	43	5.3	43	83	1	244	25	17	28	28	1.98
25693035--25693257	110	2.0	110	98	0	428	34	9	12	43	1.75
25699444--25699479	15	2.4	15	85	0	54	63	2	11	22	1.39
25700213--25700447	9	25.9	9	65	18	71	31	3	1	63	1.19
25700307--25700391	38	2.2	40	85	10	122	34	2	1	62	1.16
25700283--25700433	10	15.1	10	69	14	71	31	1	0	65	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25701159--25701199	20	2.0	21	85	4	57	43	14	0	41	1.45
25702350--25702408	31	1.9	31	82	0	73	27	8	15	49	1.73
25715025--25715080	2	28.0	2	100	0	112	0	0	50	50	1.00
25717294--25717346	15	3.5	15	75	10	54	7	20	32	39	1.81
25724005--25724046	22	2.0	21	86	13	59	45	21	4	28	1.72
25724065--25724114	21	2.3	22	82	3	57	60	8	2	30	1.37
25747968--25748267	28	10.5	27	70	19	150	33	3	30	32	1.73
25747945--25748238	58	5.1	57	82	4	351	32	3	31	32	1.73
25747945--25748238	114	2.6	114	90	3	448	32	3	31	32	1.73
25747962--25748238	57	4.8	57	83	5	328	32	2	32	32	1.71
25748225--25748297	30	2.4	30	84	6	85	38	4	19	38	1.71
25750053--25750128	17	4.5	17	73	5	73	51	5	1	42	1.33
25750053--25750128	34	2.2	35	79	6	84	51	5	1	42	1.33
25750716--25750769	26	2.1	26	83	10	67	27	9	9	53	1.63
25754160--25754193	14	2.3	15	90	5	52	52	0	2	44	1.16
25754568--25754608	19	2.2	19	87	12	59	36	0	0	63	0.95
25759339--25759367	2	14.5	2	100	0	58	51	0	0	48	1.00
25759541--25759565	1	25.0	1	100	0	50	0	0	100	0	0.00
25759835--25759874	21	1.9	21	84	0	53	37	2	0	60	1.11
25759859--25759903	19	2.4	19	96	3	83	53	0	0	46	1.00
25768465--25768502	3	12.3	3	94	5	67	34	34	31	0	1.58
25773814--25773877	25	2.6	25	94	0	110	28	20	20	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25779218--25779264	25	1.9	24	82	4	58	57	2	4	36	1.30
25779213--25779267	24	2.3	23	78	12	56	56	3	3	36	1.34
25788534--25788613	30	2.6	30	78	7	81	40	6	16	37	1.74
25788628--25788752	30	4.2	30	76	5	94	42	5	16	36	1.71
25788539--25788694	82	1.9	81	86	5	224	41	5	14	39	1.68
25790214--25790253	21	1.9	21	84	0	53	67	12	10	10	1.42
25827823--25827856	17	2.0	17	88	0	50	20	0	8	70	1.13
25829855--25829889	3	11.7	3	100	0	70	65	0	0	34	0.93
25837253--25837439	52	3.6	51	81	5	216	25	12	25	35	1.92
25837244--25837436	104	1.9	103	82	6	246	25	12	26	35	1.92
25838592--25838889	29	10.2	29	67	20	126	35	4	27	32	1.77
25838580--25838860	117	2.4	117	84	3	368	37	3	27	31	1.75
25838579--25838863	59	4.8	59	83	5	355	36	3	28	31	1.75
25838593--25838889	30	10.1	31	66	23	137	35	4	27	32	1.77
25838760--25838919	29	5.5	29	74	17	111	34	3	25	36	1.74
25838554--25838918	117	3.1	113	77	9	344	35	4	27	32	1.76
25838847--25838932	29	2.9	29	84	10	111	29	5	24	40	1.78
25840933--25841008	11	6.8	11	75	8	64	56	2	1	39	1.21
25840933--25840995	23	2.7	23	80	4	74	58	3	1	36	1.23
25840927--25841014	34	2.6	33	82	7	104	57	2	1	38	1.18
25840934--25841014	17	4.8	17	79	0	90	56	2	1	39	1.20
25841599--25841649	21	2.2	24	83	10	63	23	11	25	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25843223--25843283	30	2.0	32	84	12	83	34	6	4	54	1.48
25847800--25847854	18	3.1	18	80	15	53	7	12	34	45	1.70
25850385--25850458	24	3.1	24	80	0	94	29	10	24	35	1.89
25851435--25851477	21	2.0	21	100	0	86	32	11	23	32	1.90
25853988--25854050	24	2.6	24	87	0	90	49	11	15	23	1.77
25855954--25856016	24	2.6	24	84	0	81	49	6	15	28	1.69
25864335--25864381	24	2.0	24	91	0	76	25	12	6	55	1.61
25864343--25864397	24	2.3	24	83	0	65	29	14	7	49	1.70
25867393--25867446	24	2.3	23	83	3	63	27	12	9	50	1.71
25870902--25870936	5	7.0	5	100	0	70	60	0	0	40	0.97
25887336--25887396	23	2.5	24	82	17	74	73	0	22	3	0.97
25887338--25887394	30	1.9	29	83	16	73	77	0	21	1	0.86
25894036--25894479	222	2.0	222	98	0	852	32	16	15	35	1.91
25897536--25897595	23	2.8	21	79	18	61	68	6	11	13	1.39
25900856--25900883	5	5.6	5	100	0	56	17	21	17	42	1.89
25900907--25900990	43	2.0	43	85	0	114	23	14	27	34	1.94
25902196--25902250	28	1.9	28	88	3	83	67	7	0	25	1.16
25915767--25915838	27	2.7	26	85	6	65	51	1	6	40	1.37
25915782--25915838	27	2.1	28	93	3	98	54	1	8	35	1.42
25917275--25917303	15	1.9	15	100	0	58	72	0	0	27	0.85
25919863--25919892	3	10.0	3	100	0	60	66	33	0	0	0.92
25920837--25920919	38	2.2	39	84	6	107	40	9	13	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25922910--25923050	39	3.6	39	81	1	167	36	21	17	24	1.94
25922910--25923071	39	4.2	39	82	1	137	37	19	19	24	1.94
25928046--25928101	21	2.7	21	83	5	69	35	25	8	30	1.86
25930591--25930628	13	2.8	14	80	8	51	47	13	2	36	1.56
25931688--25931878	71	2.7	71	93	1	314	30	26	19	23	1.98
25932329--25932366	16	2.4	16	86	4	51	26	18	10	44	1.82
25934428--25934574	24	6.1	24	84	0	186	38	13	27	20	1.90
25934428--25934574	72	2.0	72	89	2	224	38	13	27	20	1.90
25939046--25939084	19	2.1	19	90	0	60	30	0	10	58	1.31
25940318--25940361	2	22.0	2	100	0	88	50	0	0	50	1.00
25948284--25948313	2	15.0	2	100	0	60	50	0	50	0	1.00
25949746--25949861	29	4.0	29	69	13	87	40	13	8	37	1.76
25955766--25955806	22	1.9	22	85	5	57	63	9	2	24	1.37
25960514--25960581	29	2.3	29	82	5	84	51	1	0	47	1.09
25968524--25968581	23	2.5	24	85	2	82	41	12	12	34	1.79
25971480--25971566	28	3.0	29	79	14	99	63	2	5	28	1.30
25974836--25975017	92	2.0	92	100	0	364	30	17	19	32	1.95
25990655--25990719	3	21.3	3	81	9	78	67	0	32	0	0.91
25990658--25990714	26	2.2	26	90	0	96	68	0	31	0	0.90
25990655--25990719	20	3.3	20	83	8	73	67	0	32	0	0.91
25996644--25996675	14	2.3	14	100	0	64	0	28	0	71	0.86
25997686--25997767	23	3.5	23	83	8	103	23	17	18	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25997686--25997767	35	2.3	35	84	10	105	23	17	18	41	1.90
25997686--25997767	12	7.0	12	81	10	91	23	17	18	41	1.90
25998695--25998745	26	2.0	26	100	0	102	35	17	11	35	1.87
25999411--25999476	33	2.0	33	94	2	116	18	21	18	42	1.89
25999472--25999506	2	17.5	2	100	0	70	0	51	0	48	1.00
26002327--26002381	23	2.4	23	100	0	110	38	21	20	20	1.94
26002343--26002391	11	4.4	11	75	14	55	40	20	20	18	1.91
26002376--26002504	24	5.5	23	78	7	125	47	16	14	21	1.82
26002327--26002510	70	3.0	58	74	19	174	44	17	17	21	1.87
26002373--26002504	70	1.9	70	95	0	237	47	15	14	21	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120