genome.fa.s5.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  87  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25159763--25159803	17	2.3	19	87	8	59	43	0	7	48	1.30
25179343--25179530	88	2.1	88	84	7	238	24	16	12	46	1.81
25179384--25179475	31	2.9	32	78	13	100	26	16	10	46	1.79
25180554--25180649	48	2.0	48	100	0	192	31	18	14	35	1.91
25182584--25182622	21	1.9	20	84	5	51	23	12	15	48	1.79
25183446--25183472	14	1.9	14	100	0	54	74	3	7	14	1.18
25185520--25185549	2	15.0	2	100	0	60	50	0	0	50	1.00
25185616--25185695	39	2.2	34	78	12	81	45	2	2	50	1.28
25187459--25187511	11	4.6	11	76	6	52	45	1	0	52	1.11
25187459--25187502	17	2.7	16	82	6	61	40	2	0	56	1.11
25187462--25187539	29	2.7	29	80	5	79	41	2	2	53	1.28
25188255--25188309	13	4.4	13	90	4	78	50	0	0	49	1.00
25188628--25188664	19	1.9	19	100	0	74	10	18	21	48	1.78
25189357--25189577	30	7.4	30	84	5	236	39	20	2	37	1.65
25189357--25189577	60	3.7	60	85	4	286	39	20	2	37	1.65
25189342--25189577	90	2.6	89	84	7	325	38	21	2	36	1.69
25189342--25189605	90	3.0	87	82	8	318	37	22	3	36	1.70
25189630--25189721	29	3.3	27	69	10	76	30	32	0	36	1.58
25189719--25189810	30	3.1	29	78	12	107	26	23	7	42	1.81
25189565--25189873	58	5.3	58	80	7	283	30	29	3	36	1.74
25201603--25201745	46	3.1	46	61	22	109	34	18	17	30	1.94
25201640--25201785	40	3.3	40	68	26	125	34	17	19	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25201527--25202159	92	6.9	92	90	2	904	33	17	18	30	1.94
25202444--25202504	6	10.7	6	72	10	56	44	1	1	52	1.20
25202441--25202501	11	5.5	11	76	3	59	45	1	1	50	1.21
25202441--25202485	17	2.8	16	90	6	72	44	2	0	53	1.13
25203245--25203288	13	3.4	13	90	0	61	50	0	2	47	1.13
25204024--25204247	60	3.8	59	84	7	258	40	20	2	36	1.67
25204018--25204247	30	7.7	30	83	6	231	40	20	3	35	1.68
25204018--25204376	30	12.3	27	75	13	172	37	24	2	35	1.68
25204234--25204542	58	5.3	58	81	8	301	30	29	2	37	1.72
25204274--25204366	28	3.3	27	74	16	91	32	29	0	38	1.57
25204119--25204498	30	13.1	29	71	14	193	33	27	2	35	1.71
25204299--25204390	28	3.2	28	71	8	96	30	31	0	38	1.58
25204177--25204542	116	3.2	114	81	6	368	32	28	3	36	1.72
25213831--25213891	30	2.0	32	87	6	90	57	6	1	34	1.34
25218072--25218136	30	2.1	31	86	8	89	27	23	10	38	1.88
25218736--25218761	13	2.0	13	100	0	52	30	23	7	38	1.83
25234029--25234071	16	2.7	16	88	0	68	16	46	11	25	1.80
25235267--25235656	59	6.6	58	79	10	342	36	23	2	37	1.69
25235264--25235667	30	13.6	29	79	8	323	36	23	2	37	1.68
25241149--25241244	14	6.8	13	79	15	95	85	0	12	2	0.69
25241150--25241244	15	6.3	15	81	7	104	86	0	11	2	0.66
25241149--25241244	29	3.4	27	83	9	104	85	0	12	2	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25241150--25241259	45	2.4	46	82	10	129	83	0	14	1	0.73
25241175--25241259	15	5.8	14	81	13	82	82	0	17	0	0.67
25241167--25241253	7	11.6	8	72	19	55	82	0	17	0	0.66
25241167--25241259	29	3.2	28	83	11	107	82	0	17	0	0.66
25241150--25241244	1	95.0	1	74	0	73	86	0	11	2	0.66
25241175--25241259	16	5.8	15	82	15	90	82	0	17	0	0.67
25242209--25242724	50	10.4	50	76	5	244	34	17	29	17	1.94
25242174--25242724	99	5.6	99	75	7	350	34	17	29	18	1.94
25242327--25242713	99	3.9	99	77	7	358	34	18	30	17	1.93
25242873--25242970	41	2.4	40	89	5	151	31	19	17	31	1.95
25242999--25243360	78	4.6	78	79	4	361	25	32	18	24	1.97
25243021--25243210	39	4.8	38	69	14	118	26	33	17	22	1.96
25242954--25243360	157	2.6	155	80	2	456	25	30	18	25	1.98
25243195--25243327	39	3.4	39	70	4	124	24	30	18	26	1.98
25245324--25245674	30	11.9	29	78	11	207	34	25	1	38	1.67
25245338--25245638	59	5.1	58	77	7	257	35	25	1	37	1.68
25245327--25245638	30	10.5	30	78	8	255	35	25	1	37	1.67
25257970--25258023	25	2.2	26	83	6	67	37	1	1	59	1.19
25258010--25258081	16	4.4	16	70	16	58	27	4	0	68	1.08
25258009--25258078	23	2.9	23	74	15	61	27	4	0	68	1.08
25257986--25258073	24	3.6	25	74	20	69	29	3	1	65	1.16
25259825--25259849	13	1.9	13	100	0	50	32	8	0	60	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25271707--25271748	19	2.2	20	83	12	52	59	11	2	26	1.45
25272706--25272750	19	2.3	20	74	18	58	46	2	0	51	1.13
25272712--25272750	18	2.1	19	90	4	62	43	2	0	53	1.14
25274640--25274664	10	2.5	10	100	0	50	36	0	0	64	0.94
25285530--25285577	17	3.0	16	82	8	53	33	0	0	66	0.92
25285531--25285577	16	2.9	16	82	14	53	31	0	0	68	0.90
25291444--25291494	12	4.2	12	82	0	57	70	19	3	5	1.24
25291449--25291494	24	1.9	24	86	0	65	69	19	4	6	1.28
25291551--25291600	23	2.1	24	81	7	57	64	16	6	14	1.48
25294039--25294078	21	1.9	21	85	10	55	35	32	20	12	1.90
25295016--25295172	73	2.2	73	94	0	269	35	22	11	30	1.90
25296834--25296865	3	10.3	3	93	6	55	0	34	0	65	0.93
25296861--25296898	19	2.0	19	85	10	51	7	15	2	73	1.17
25296927--25297003	31	2.5	30	86	12	104	22	11	20	45	1.83
25306758--25307046	62	4.8	61	80	5	261	26	22	16	33	1.95
25306758--25307085	61	5.4	60	78	6	297	26	21	16	34	1.95
25306823--25307086	62	4.4	62	77	8	186	27	23	16	33	1.95
25310374--25310549	83	2.1	83	97	0	334	55	3	5	35	1.41
25310532--25310565	16	2.1	16	100	0	68	52	11	5	29	1.61
25310548--25310996	83	5.4	83	89	2	609	53	4	5	36	1.44
25310369--25310897	182	3.0	176	88	8	828	55	4	4	35	1.41
25310548--25310996	248	1.8	249	85	3	636	53	4	5	36	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25311705--25311750	22	2.2	22	85	14	62	52	2	0	45	1.13
25312252--25312284	5	6.8	5	89	6	50	75	0	0	24	0.80
25319383--25319420	20	1.9	20	94	0	67	31	34	5	28	1.80
25321249--25321286	18	2.1	18	90	9	60	55	2	0	42	1.14
25328041--25328081	20	2.0	21	90	4	66	51	0	4	43	1.23
25328336--25328395	31	1.9	31	82	0	75	51	8	16	23	1.71
25335015--25335040	6	4.3	6	100	0	52	19	50	0	30	1.48
25336107--25336131	10	2.5	10	100	0	50	32	0	0	68	0.90
25337824--25337861	17	2.2	18	85	4	51	63	0	0	36	0.95
25337807--25337861	28	1.9	29	82	10	69	60	0	0	40	0.97
25337833--25337870	17	2.2	17	86	9	51	55	0	0	44	0.99
25338308--25338341	17	2.0	17	88	0	50	44	2	2	50	1.32
25341682--25341739	28	2.1	28	86	0	80	50	15	0	34	1.45
25344421--25344486	27	2.5	26	80	7	87	25	39	21	13	1.90
25344775--25344819	15	3.0	15	76	0	54	20	0	8	71	1.12
25359385--25359414	15	1.9	16	93	6	53	6	30	0	63	1.20
25363266--25363301	18	2.0	18	88	0	54	66	0	0	33	0.92
25390050--25390087	15	2.3	17	82	17	53	52	2	0	44	1.14
25390054--25390087	15	2.1	17	89	10	54	52	2	0	44	1.16
25402547--25402596	2	25.0	2	100	0	100	0	0	50	50	1.00
25406461--25406568	41	2.6	39	77	9	117	30	1	20	47	1.61
25407627--25407675	19	2.5	20	80	16	57	34	0	2	63	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25421744--25421780	18	2.1	18	89	0	56	24	27	0	48	1.51
25422254--25422280	13	2.1	13	100	0	54	29	14	14	40	1.86
25428044--25428083	20	2.0	20	100	0	80	40	5	20	35	1.74
25436198--25436290	37	2.5	36	81	13	100	65	5	0	29	1.14
25436414--25436537	12	10.8	12	70	10	80	70	20	4	4	1.23
25436414--25436540	11	11.2	11	69	10	60	70	21	3	4	1.23
25436413--25436505	34	2.8	36	71	20	101	70	19	4	5	1.23
25436455--25436543	22	4.0	22	75	17	85	69	21	3	5	1.24
25436455--25436540	45	1.9	45	90	4	138	69	22	3	4	1.22
25448193--25448224	16	2.0	16	93	0	55	25	12	3	59	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120