genome.fa.s5.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  63  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18639973--18640080	54	2.0	54	90	3	173	32	21	29	16	1.95
18640027--18640281	41	6.2	41	88	1	336	30	22	29	18	1.97
18639932--18640203	95	3.0	95	81	11	324	30	22	30	17	1.96
18639891--18640164	136	2.0	136	94	0	476	30	22	30	17	1.96
18639850--18640278	177	2.5	177	87	7	618	30	22	29	17	1.96
18640144--18640214	24	3.2	24	62	25	57	28	26	30	14	1.95
18639823--18640242	218	1.9	218	89	3	650	30	22	29	17	1.97
18642776--18643087	43	7.3	42	88	4	455	22	19	27	29	1.98
18642776--18643087	128	2.4	128	91	1	511	22	19	27	29	1.98
18642776--18643087	85	3.7	84	87	4	455	22	19	27	29	1.98
18644150--18644205	27	2.2	24	87	12	78	51	8	19	19	1.73
18648471--18648509	19	2.0	20	90	5	62	35	2	0	61	1.10
18648514--18648586	21	3.7	19	82	12	85	38	0	5	56	1.23
18648542--18648584	11	4.0	11	80	17	54	37	0	6	55	1.27
18648497--18648587	21	4.3	21	77	19	84	40	0	4	54	1.20
18660771--18661010	86	2.8	83	84	5	284	30	26	17	26	1.97
18660771--18661039	43	6.3	43	81	7	253	30	26	16	26	1.97
18664857--18664913	18	3.2	18	67	5	53	28	0	10	61	1.29
18664970--18665104	41	3.3	40	72	6	117	20	22	17	38	1.93
18664966--18665068	42	2.5	41	75	1	116	19	22	17	40	1.91
18665120--18665214	41	2.3	41	81	0	109	21	25	17	35	1.95
18665200--18665307	40	2.7	40	86	4	146	18	18	22	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18681616--18682084	23	20.4	23	86	0	661	45	15	5	32	1.70
18682379--18682420	16	2.6	16	92	0	66	45	21	7	26	1.77
18692999--18693396	190	2.1	190	80	2	442	24	17	27	30	1.97
18697073--18697178	45	2.3	45	85	1	149	39	11	11	37	1.77
18700391--18700421	14	2.2	14	94	0	53	67	9	3	19	1.33
18701010--18701045	18	1.9	19	88	5	56	33	5	0	61	1.19
18701013--18701080	34	2.0	34	85	5	93	39	2	1	55	1.24
18701546--18701605	31	1.9	31	82	0	75	25	13	11	50	1.75
18702475--18702507	5	6.8	5	93	3	50	45	0	12	42	1.41
18708970--18709086	49	2.4	49	98	0	225	42	17	14	25	1.87
18717597--18717659	24	2.6	24	87	0	90	49	11	14	25	1.76
18726166--18726205	21	2.0	21	90	5	64	25	15	15	45	1.84
18728032--18728632	23	26.2	23	85	0	745	47	13	4	34	1.64
18732553--18732589	14	2.7	14	87	4	58	35	16	8	40	1.78
18746184--18746222	21	1.9	21	89	5	62	15	12	7	64	1.49
18748791--18748852	26	2.4	26	100	0	124	29	6	24	40	1.80
18753224--18753301	36	2.2	36	90	0	120	33	26	12	26	1.93
18753371--18753714	23	15.0	23	85	0	463	45	15	5	33	1.69
18753371--18753882	46	11.3	46	83	4	603	46	14	5	33	1.68
18753371--18753882	69	7.6	69	80	3	610	46	14	5	33	1.68
18753678--18753751	37	2.0	37	89	0	112	48	16	4	31	1.64
18753716--18753882	23	7.3	23	81	0	199	46	12	5	35	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18753655--18753774	60	2.0	60	85	0	159	45	15	5	33	1.69
18753586--18753843	129	2.0	129	90	0	408	45	13	6	34	1.69
18753715--18753908	69	2.7	69	79	4	208	46	12	5	35	1.64
18766287--18766326	21	1.9	21	84	0	53	57	2	0	40	1.12
18766303--18766332	15	2.0	15	93	0	51	43	0	0	56	0.99
18771286--18771363	3	26.0	3	88	5	113	1	34	0	64	1.02
18774518--18774566	17	2.9	17	75	24	50	4	20	0	75	0.96
18783432--18783491	21	2.9	21	87	0	93	35	20	18	26	1.95
18783507--18783541	3	11.7	3	88	11	54	0	37	0	62	0.95
18793065--18793115	12	4.2	12	73	14	50	62	0	35	1	1.06
18793065--18793116	18	2.9	17	78	13	52	63	0	34	1	1.06
18798267--18798309	19	2.4	19	82	17	56	67	0	32	0	0.91
18798275--18798308	11	2.9	12	86	8	52	64	0	35	0	0.94
18798259--18798308	23	2.2	22	82	13	57	64	0	34	2	1.05
18815390--18815425	11	3.4	11	88	3	56	55	0	0	44	0.99
18819058--18819109	22	2.4	21	72	12	52	28	5	0	65	1.16
18819282--18819310	7	4.3	7	91	8	51	58	27	0	13	1.36
18819280--18819312	13	2.5	13	100	0	66	51	30	0	18	1.46
18824990--18825048	24	2.5	24	85	0	82	47	11	13	27	1.78
18833584--18833623	21	2.0	21	90	5	64	25	15	15	45	1.84
18835450--18836050	23	26.2	23	85	0	736	47	13	4	33	1.65
18848775--18848836	26	2.4	26	100	0	124	29	6	24	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18849103--18849144	18	2.4	18	88	11	61	71	0	21	7	1.09
18850108--18850272	26	6.3	26	80	9	142	21	28	17	32	1.96
18850108--18850274	52	3.2	52	84	6	205	21	28	17	32	1.96
18850108--18850272	78	2.1	78	86	6	228	21	28	17	32	1.96
18854895--18855290	52	7.7	52	86	3	489	22	28	16	32	1.96
18854895--18855290	103	3.8	104	86	3	498	22	28	16	32	1.96
18854895--18855290	26	15.3	27	81	7	441	22	28	16	32	1.96
18858662--18858764	34	3.0	34	82	1	125	49	1	31	17	1.58
18858665--18858767	17	6.2	17	68	14	54	46	1	32	19	1.61
18864159--18864261	34	3.0	34	77	4	100	50	1	29	18	1.58
18866813--18866858	20	2.2	21	88	3	67	41	0	0	58	0.98
18868101--18868140	20	2.0	20	85	9	55	35	5	0	60	1.19
18868142--18868188	19	2.4	19	80	19	53	40	0	4	55	1.19
18868166--18868210	21	2.1	21	87	0	63	33	2	6	57	1.37
18872545--18872612	32	2.1	32	94	0	118	38	35	11	14	1.83
18872905--18872982	36	2.2	36	85	0	102	33	26	12	26	1.93
18873051--18873457	23	17.7	23	86	0	562	46	14	5	33	1.67
18879712--18879765	26	2.1	26	86	6	74	38	7	20	33	1.80
18882331--18882407	34	2.4	31	79	10	82	28	3	2	64	1.24
18882412--18882456	21	2.1	21	87	0	63	35	2	6	55	1.38
18884605--18884646	21	2.0	21	95	0	75	30	11	19	38	1.88
18885163--18885475	49	6.4	49	72	3	209	36	17	25	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18885719--18885897	76	2.4	75	89	0	259	36	18	22	22	1.95
18885794--18886641	123	6.9	123	85	2	1092	39	16	21	22	1.92
18886484--18886575	48	1.9	48	84	4	123	43	14	19	22	1.87
18886704--18886806	46	2.3	45	87	1	143	31	27	17	24	1.97
18886789--18886868	39	2.1	39	83	4	99	33	27	17	21	1.96
18888221--18888360	31	4.7	29	77	12	106	35	22	7	34	1.83
18888185--18888441	61	4.3	59	75	13	193	33	24	8	33	1.85
18888228--18888457	30	7.6	30	74	9	166	33	23	7	34	1.84
18888374--18888457	29	2.9	28	76	10	89	32	25	7	35	1.83
18889537--18889611	24	3.1	24	72	14	64	54	12	13	20	1.70
18890223--18890272	18	2.8	18	81	0	64	50	0	0	50	1.00
18890238--18890283	25	1.9	24	83	16	60	52	0	0	47	1.00
18897407--18897441	18	1.9	18	88	0	52	54	0	0	45	0.99
18897405--18897459	21	2.6	21	80	11	60	50	0	0	49	1.00
18900347--18900388	21	2.0	21	95	0	75	33	9	16	40	1.81
18902204--18902251	21	2.3	21	85	3	62	39	0	2	58	1.10
18902928--18902956	14	2.1	14	100	0	58	20	0	0	79	0.74
18903535--18903581	21	2.2	22	88	3	69	36	0	6	57	1.24
18908249--18908326	36	2.2	36	90	0	120	33	26	12	26	1.93
18908396--18908739	23	15.0	23	85	0	463	45	15	5	32	1.70
18908396--18908907	46	11.3	46	83	4	594	46	14	5	33	1.69
18908396--18908907	69	7.6	69	80	3	601	46	14	5	33	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18908703--18908776	37	2.0	37	86	0	103	50	14	4	31	1.62
18908741--18908909	23	7.3	23	80	0	194	47	11	5	34	1.65
18908680--18908799	60	2.0	60	85	0	159	46	14	6	32	1.70
18908611--18908868	129	2.0	129	90	0	408	46	13	6	33	1.70
18908740--18908933	69	2.7	69	79	4	208	47	12	5	34	1.65
18919175--18919275	31	3.1	32	73	12	91	39	1	1	56	1.22
18919210--18919275	34	2.0	32	85	5	87	40	1	1	56	1.18
18919266--18919320	21	2.7	21	86	5	78	38	0	7	54	1.28
18921371--18921412	21	2.0	21	90	0	66	35	14	14	35	1.86
18921733--18921795	33	1.9	32	84	9	83	36	20	6	36	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120