genome.fa.s5.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  54  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15877699--15877737	20	2.0	20	85	9	55	53	7	5	33	1.51
15877904--15878097	97	2.0	97	85	2	264	39	13	16	30	1.88
15877942--15878120	97	1.9	97	80	5	211	40	12	15	31	1.84
15878339--15878742	29	13.7	30	72	16	231	33	3	25	37	1.73
15878364--15878868	59	8.5	59	78	7	440	33	4	24	37	1.75
15878369--15878902	30	18.1	29	68	18	191	33	4	24	37	1.75
15878367--15878879	177	2.9	177	79	7	535	34	4	24	37	1.75
15881842--15881894	27	2.0	26	81	3	61	16	9	5	67	1.37
15882022--15882054	11	3.1	11	91	4	50	24	0	3	72	0.98
15882022--15882055	15	2.4	14	90	5	50	23	0	2	73	0.97
15883833--15884043	109	1.9	109	84	1	280	40	15	12	31	1.84
15886059--15886135	30	2.6	30	87	0	109	25	23	23	27	2.00
15886058--15886111	15	3.6	15	73	9	56	27	22	20	29	1.98
15893218--15893299	24	3.4	24	84	0	110	29	23	23	24	1.99
15893281--15893357	27	2.8	27	88	2	118	31	24	20	23	1.98
15897931--15898012	24	3.4	24	91	0	119	24	23	25	26	2.00
15899437--15899954	50	10.4	50	80	1	464	37	16	23	22	1.94
15899470--15900010	150	3.6	149	80	4	570	37	17	22	22	1.94
15899753--15899859	49	2.2	50	86	1	144	40	18	20	20	1.92
15901480--15901549	31	2.2	31	79	2	77	21	8	5	64	1.43
15901578--15901621	17	2.6	17	82	17	56	13	0	13	72	1.12
15909450--15909491	21	2.0	22	86	13	61	66	11	11	9	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15909451--15909499	21	2.3	21	82	10	55	71	12	10	6	1.30
15912647--15912703	18	3.3	18	65	22	50	7	19	5	68	1.33
15912640--15912724	33	2.7	31	81	15	104	5	21	3	69	1.25
15912694--15912730	17	2.2	17	90	9	58	5	18	0	75	0.99
15916079--15916152	29	2.5	30	82	10	89	35	2	2	59	1.26
15916129--15916185	18	3.0	20	75	19	59	36	1	3	57	1.26
15916129--15916185	19	2.9	20	77	15	57	36	1	3	57	1.26
15916129--15916194	20	3.2	20	79	16	66	34	1	4	59	1.27
15932274--15932342	35	1.9	36	83	16	90	57	4	1	36	1.27
15942658--15942690	16	1.9	17	88	11	50	45	12	0	42	1.41
15944573--15944608	18	2.0	18	100	0	72	27	11	22	38	1.88
15947672--15947732	28	2.1	28	85	8	79	22	11	32	32	1.90
15947757--15947853	30	3.3	30	69	21	78	37	0	24	38	1.56
15947727--15947912	59	3.1	59	82	3	178	36	3	26	32	1.75
15947809--15947909	29	3.5	29	67	18	75	36	3	26	32	1.75
15949811--15949900	6	15.7	6	75	13	73	48	2	0	48	1.13
15949847--15949900	23	2.3	23	96	0	99	53	0	0	46	1.00
15949817--15949913	17	5.3	17	75	18	70	50	3	1	45	1.24
15949817--15949879	17	3.7	17	85	6	83	50	3	0	46	1.17
15950178--15950692	76	6.8	76	95	0	897	32	16	17	33	1.92
15962901--15963093	59	3.3	59	84	4	255	36	2	27	33	1.71
15962938--15963090	29	5.2	28	73	20	107	35	1	27	35	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15964997--15965118	17	7.4	17	77	14	121	51	1	2	44	1.24
15964991--15965118	6	22.0	6	73	12	97	50	1	2	45	1.23
15965017--15965118	47	2.2	46	87	1	150	54	0	2	41	1.22
15965017--15965141	47	2.7	47	82	1	144	54	2	2	40	1.26
15965403--15965939	76	7.0	76	93	0	903	32	15	16	35	1.90
15981059--15981125	4	16.5	4	79	14	75	73	1	4	20	1.09
15981076--15981136	15	3.8	17	79	12	58	72	3	4	19	1.18
15981062--15981146	37	2.3	38	78	17	99	72	3	4	18	1.16
15981386--15981410	5	5.0	5	100	0	50	80	0	0	20	0.72
15982733--15983490	100	7.6	100	83	3	749	26	18	18	36	1.94
15982759--15983489	50	14.6	50	69	6	345	25	18	18	36	1.94
15986241--15986356	23	5.0	22	78	14	90	10	26	18	44	1.81
15991819--15991884	4	16.5	4	76	20	59	77	1	3	18	0.98
15991820--15991883	33	2.0	32	84	9	85	76	1	3	18	1.00
15991831--15991898	22	3.0	23	80	16	70	76	2	4	16	1.07
16010886--16010954	26	2.7	26	79	4	68	33	17	26	23	1.96
16026025--16026103	26	3.2	24	80	16	74	21	12	1	64	1.34
16026335--16026383	13	3.2	16	77	19	50	20	10	8	61	1.53
16028356--16028410	7	7.6	7	76	8	56	30	1	10	56	1.44
16028356--16028419	21	2.8	23	86	6	78	28	3	12	56	1.51
16028358--16028420	23	2.8	23	83	9	69	30	3	12	53	1.54
16028947--16028985	16	2.4	17	83	12	55	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16030560--16030600	20	2.0	20	85	0	55	43	12	21	21	1.85
16033788--16033827	16	2.5	15	80	11	53	27	0	0	72	0.85
16040549--16040589	21	2.0	21	95	0	73	41	17	12	29	1.85
16042970--16043002	9	3.6	9	95	4	57	30	21	0	48	1.50
16045779--16045811	16	2.1	16	94	0	57	33	0	6	60	1.21
16047388--16047493	28	3.7	28	77	7	97	26	13	23	36	1.92
16047443--16047503	28	2.2	28	84	0	77	24	18	21	36	1.95
16073531--16073627	48	2.0	48	100	0	194	28	14	20	36	1.92
16087902--16088240	52	6.5	52	84	3	423	26	13	23	36	1.91
16087903--16088240	104	3.2	104	87	1	482	26	13	23	36	1.92
16087903--16088240	156	2.2	156	87	1	480	26	13	23	36	1.92
16123236--16123829	32	18.6	32	78	7	445	36	17	17	28	1.92
16123190--16123335	65	2.2	65	91	0	229	36	17	15	31	1.90
16123305--16123831	159	3.3	160	82	1	533	37	17	17	28	1.92
16124717--16124770	28	1.9	28	85	7	74	20	20	14	44	1.86
16126288--16126322	3	11.3	3	93	6	61	65	0	34	0	0.93
16126288--16126386	15	6.5	15	71	16	55	66	1	28	4	1.16
16129438--16129519	24	3.4	23	74	14	67	21	19	24	34	1.97
16129438--16129530	49	1.9	48	86	2	132	24	18	23	33	1.97
16133204--16133366	84	1.9	84	93	0	281	27	22	23	26	1.99
16139289--16139326	5	7.6	5	100	0	76	21	0	0	78	0.74
16141795--16141833	3	13.0	3	100	0	78	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16148408--16148568	50	3.3	48	73	11	130	33	18	26	21	1.96
16150400--16150447	24	2.0	25	83	4	62	35	27	6	31	1.82
16154041--16154188	73	2.0	73	94	0	260	26	18	6	49	1.70
16165289--16165335	20	2.4	20	85	3	60	42	17	23	17	1.88
16165290--16165361	20	3.7	19	71	14	58	44	18	20	16	1.87
16165631--16165836	68	3.1	65	71	17	174	37	3	6	51	1.47
16165693--16165744	17	2.8	19	77	11	63	42	1	3	51	1.31
16175639--16175674	6	6.0	6	100	0	72	33	0	66	0	0.92
16177101--16177134	3	11.3	3	100	0	68	67	0	0	32	0.91
16177581--16177614	12	2.8	12	86	4	50	67	20	5	5	1.33
16177621--16177683	12	5.5	11	72	12	56	63	19	9	7	1.48
16177604--16177674	33	2.2	32	82	14	83	66	19	7	7	1.39
16177623--16177692	21	3.2	21	76	9	59	64	17	10	8	1.48
16177588--16177677	21	4.1	22	74	8	76	63	21	8	6	1.46
16177689--16177726	20	2.0	20	89	5	60	71	26	0	2	1.00
16183470--16183683	23	9.5	23	71	14	142	42	21	24	11	1.86
16183524--16183601	39	2.0	39	92	0	129	43	21	21	12	1.86
16183563--16183683	48	2.6	46	85	7	163	40	23	24	11	1.88
16188614--16188669	28	2.0	28	85	0	76	26	33	16	23	1.95
16192609--16192658	25	1.9	27	84	8	68	40	4	0	56	1.18
16197305--16197354	20	2.4	21	86	3	66	56	2	0	42	1.11
16197298--16197395	51	1.9	52	85	6	137	60	2	1	36	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16197326--16197399	29	2.5	29	82	6	87	64	1	1	32	1.10
16199496--16199521	13	2.0	13	100	0	52	15	15	30	38	1.88
16204306--16204381	20	3.8	20	76	8	66	57	0	1	40	1.07
16204325--16204399	10	7.5	10	70	10	55	61	0	2	36	1.10
16204318--16204380	21	3.0	20	79	6	63	60	0	1	38	1.07
16204347--16204390	21	2.1	21	83	8	54	68	0	4	27	1.09
16204640--16204734	10	9.6	10	70	18	56	29	3	1	66	1.14
16204625--16204691	9	7.0	9	74	14	55	25	4	2	67	1.24
16204625--16204702	19	3.9	19	75	12	68	25	5	2	66	1.25
16204640--16204732	39	2.3	39	83	10	109	29	3	1	66	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120