genome.fa.s5.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  36  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9377131--9377196	18	3.8	17	74	20	57	24	1	0	74	0.91
9377267--9377316	27	1.9	27	84	8	68	18	4	6	72	1.22
9382010--9382416	210	1.9	209	94	0	715	40	13	14	31	1.85
9386071--9386209	73	1.9	73	95	0	251	36	12	25	25	1.91
9387887--9387925	18	2.1	19	86	13	55	35	25	0	38	1.56
9398725--9398818	40	2.3	40	92	0	161	32	28	11	26	1.92
9399538--9399567	12	2.5	12	94	0	51	16	10	0	73	1.09
9400439--9400878	220	2.0	220	98	0	844	35	17	20	25	1.95
9401541--9401598	23	2.4	25	75	19	59	22	3	3	70	1.17
9401560--9401593	16	2.2	15	94	5	59	26	2	0	70	1.01
9403310--9403349	16	2.6	16	84	4	55	20	5	22	52	1.65
9407084--9407125	20	2.3	19	84	12	52	16	11	9	61	1.55
9408433--9408652	112	2.0	112	94	1	388	45	5	8	40	1.55
9426091--9426139	26	2.0	25	88	8	73	48	4	18	28	1.66
9427192--9427656	29	15.9	28	69	15	191	34	7	25	33	1.83
9427163--9427617	87	5.2	87	77	8	342	34	7	24	33	1.85
9427174--9427576	29	13.9	28	72	12	215	33	7	25	33	1.84
9429344--9429417	17	4.4	17	84	5	105	54	2	0	43	1.14
9429344--9429417	6	13.0	6	72	16	68	54	2	0	43	1.14
9429344--9429417	34	2.2	34	92	0	121	54	2	0	43	1.14
9429346--9429399	23	2.4	23	84	3	74	55	1	0	42	1.10
9429346--9429399	11	4.8	11	84	4	72	55	1	0	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9429836--9430815	209	4.7	209	88	1	1401	22	22	18	36	1.95
9430835--9431061	39	5.8	39	68	7	138	23	18	33	24	1.97
9430823--9431059	78	3.0	77	81	7	282	23	19	32	24	1.97
9431242--9431528	50	5.8	48	75	12	222	15	30	18	35	1.92
9431242--9431490	99	2.5	99	84	0	320	14	30	18	36	1.91
9436635--9436722	30	2.9	30	85	9	117	37	4	27	30	1.77
9436635--9436722	31	2.9	30	85	6	124	37	4	27	30	1.77
9438382--9438456	6	13.0	6	75	8	75	53	1	1	44	1.17
9438382--9438456	17	4.4	17	84	3	105	53	1	1	44	1.17
9438379--9438456	23	3.1	23	72	24	68	53	1	1	43	1.16
9438384--9438439	29	1.9	29	89	7	87	53	1	1	42	1.21
9438403--9438457	11	4.8	11	82	6	56	56	1	1	40	1.21
9438382--9438445	29	2.2	29	80	5	85	51	1	1	45	1.20
9439719--9439771	27	2.0	27	88	0	79	33	16	24	24	1.96
9441077--9441998	472	2.0	461	90	3	1451	48	12	8	30	1.70
9445500--9445545	18	2.6	18	100	0	92	43	0	0	56	0.99
9445936--9445982	24	2.0	24	84	16	62	65	2	0	31	1.04
9446041--9446087	24	2.0	24	82	0	58	29	12	27	29	1.93
9447485--9447541	29	1.9	29	85	3	78	33	14	15	36	1.88
9447705--9447769	29	2.2	30	81	8	71	50	7	6	35	1.56
9449146--9449180	18	2.0	17	94	5	61	57	0	0	42	0.99
9449462--9449707	132	1.9	131	89	0	384	47	16	15	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9450266--9450333	30	2.2	28	82	12	73	55	0	2	41	1.15
9454004--9454210	108	1.9	109	90	3	328	31	13	17	37	1.89
9456922--9456968	21	2.2	21	92	0	76	38	23	23	14	1.92
9466789--9466930	72	2.0	71	83	1	176	29	27	18	24	1.98
9472665--9473901	196	6.3	196	86	1	1568	37	18	16	27	1.92
9472665--9473901	393	3.2	389	87	1	1695	37	18	16	27	1.92
9472670--9473901	589	2.1	587	87	1	1768	36	18	16	27	1.93
9473878--9473992	50	2.3	50	83	0	140	39	18	13	28	1.89
9476135--9476213	29	2.7	30	86	5	108	45	22	22	8	1.80
9478447--9478530	29	2.9	29	76	1	89	44	25	17	13	1.85
9479732--9479770	3	13.0	3	100	0	78	33	0	0	66	0.92
9480169--9480244	28	2.9	27	77	16	72	27	0	9	63	1.25
9480176--9480244	26	2.6	27	81	11	79	30	0	7	62	1.22
9481030--9481069	21	1.9	21	89	0	62	40	2	2	55	1.27
9483414--9483467	7	7.7	7	79	8	56	44	25	0	29	1.54
9483422--9483453	14	2.3	14	100	0	64	46	18	0	34	1.49
9483415--9483468	21	2.6	21	87	0	81	44	25	0	29	1.54
9483716--9483759	21	2.0	22	91	4	72	56	9	9	25	1.59
9483805--9483856	26	2.0	26	84	0	68	59	7	0	32	1.26
9483826--9483878	22	2.3	23	83	6	63	52	11	0	35	1.37
9483825--9483886	24	2.7	22	82	5	70	50	11	0	38	1.39
9486757--9486832	27	2.8	27	88	4	73	21	31	26	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9490031--9490591	216	2.6	216	92	0	915	29	20	10	39	1.86
9492251--9492346	20	4.9	20	77	16	103	51	0	0	48	1.00
9492255--9492348	29	3.3	29	87	1	145	51	0	0	48	1.00
9493349--9493392	23	2.0	22	86	4	61	52	4	0	43	1.22
9517590--9517636	24	2.0	24	83	8	60	48	0	6	44	1.28
9518375--9518425	17	2.9	17	78	16	59	33	23	17	25	1.96
9518490--9518522	14	2.4	14	100	0	66	48	24	6	21	1.72
9519767--9519861	33	2.9	33	75	7	104	32	20	20	27	1.97
9523429--9523484	14	4.0	14	76	0	58	39	21	17	21	1.93
9528671--9528854	90	2.0	90	96	0	341	46	11	3	38	1.58
9534447--9534507	19	3.2	19	76	6	61	36	18	27	18	1.94
9534499--9534557	27	2.2	27	93	0	100	13	13	33	38	1.84
9537557--9537976	231	1.8	231	96	0	777	36	24	13	25	1.92
9540388--9540464	23	3.3	23	76	16	95	53	10	1	35	1.44
9550192--9550231	15	2.7	15	85	11	55	37	5	22	35	1.76
9555152--9555197	19	2.4	19	89	10	76	34	21	26	17	1.95
9557800--9557890	45	2.0	45	100	0	182	28	15	8	47	1.75
9557807--9557880	23	3.3	23	66	30	68	28	13	9	48	1.73
9559593--9559682	40	2.2	40	82	5	101	37	20	24	17	1.93
9559671--9559968	41	7.3	41	80	6	300	22	27	26	24	2.00
9559694--9560069	82	4.6	82	82	3	407	24	25	25	24	2.00
9559671--9559960	123	2.4	123	85	1	375	23	27	25	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9559631--9560054	82	5.2	81	79	5	255	24	25	25	24	2.00
9563431--9563632	8	25.2	8	67	13	94	44	0	2	52	1.20
9563362--9563866	102	4.9	102	73	13	349	44	1	4	50	1.29
9563613--9563693	32	2.6	32	96	2	146	45	1	4	48	1.32
9563700--9563941	10	24.1	10	67	24	79	44	0	3	51	1.21
9563676--9563803	22	6.0	22	68	22	85	45	0	3	51	1.17
9563477--9563832	170	2.1	168	95	2	633	45	0	4	49	1.27
9563842--9563917	26	2.9	26	76	9	84	47	0	1	51	1.09
9563477--9563908	170	2.6	169	87	6	533	45	0	4	49	1.26
9563333--9564066	138	5.5	137	79	11	691	43	2	4	50	1.35
9563903--9564182	148	1.9	148	83	0	362	36	7	3	51	1.49
9564036--9564078	22	2.0	22	85	0	59	34	4	6	53	1.49
9570006--9570038	15	2.2	15	100	0	66	21	0	30	48	1.50
9570102--9570371	43	6.3	43	85	1	355	24	17	30	28	1.97
9570102--9570371	128	2.1	129	86	2	382	24	17	30	28	1.97
9581944--9582002	7	8.6	7	77	20	54	83	0	15	1	0.74
9581961--9582004	5	8.2	5	80	14	52	81	0	18	0	0.68
9581960--9582004	11	4.1	11	88	11	74	82	0	17	0	0.68
9581960--9582002	6	7.7	6	80	15	56	83	0	16	0	0.64
9582964--9583442	50	9.7	50	77	3	448	33	17	30	18	1.94
9582961--9583422	148	3.1	149	83	2	565	33	16	30	18	1.94
9582943--9583441	198	2.5	198	82	3	522	34	17	30	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9582968--9583442	99	4.8	99	80	4	467	33	17	30	18	1.94
9583555--9584048	39	12.5	39	82	8	498	28	27	17	25	1.97
9583596--9584015	42	10.6	36	79	13	171	29	27	17	25	1.98
9583595--9584015	77	5.3	78	80	9	250	29	28	17	25	1.97
9583556--9584048	118	4.2	120	81	8	503	28	27	17	25	1.98
9584931--9584966	11	3.3	11	84	0	54	77	11	0	11	0.99
9585877--9586018	30	4.8	29	80	11	112	38	19	4	38	1.73
9585877--9586037	30	5.4	29	78	14	89	39	20	4	36	1.73
9586500--9586784	109	2.7	107	77	7	276	30	12	18	38	1.88
9589334--9589363	15	2.0	15	100	0	60	26	6	0	66	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120