genome.fa.s5.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  80  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23372514--23372598	43	2.0	43	83	4	109	30	12	10	45	1.76
23373086--23373115	6	5.0	6	100	0	60	50	0	50	0	1.00
23373216--23373262	21	2.2	21	92	0	76	21	36	17	25	1.94
23376567--23376641	4	18.5	4	79	8	53	0	34	0	65	0.93
23376573--23376630	20	2.9	19	80	10	71	0	37	0	62	0.96
23376616--23376641	13	2.0	13	100	0	52	0	23	0	76	0.78
23377844--23377923	39	2.0	39	83	11	101	27	37	0	35	1.57
23379979--23380073	39	2.4	39	75	6	95	54	6	4	34	1.45
23380659--23380698	20	2.0	20	85	9	55	37	0	7	55	1.29
23381861--23381889	9	3.2	9	100	0	58	51	0	0	48	1.00
23382337--23382576	120	2.0	120	93	1	410	32	16	20	30	1.95
23383248--23383319	21	3.4	21	90	3	108	19	19	12	48	1.80
23383259--23383317	22	2.7	22	94	2	102	20	23	8	47	1.77
23385633--23385690	30	1.9	30	89	0	89	24	13	32	29	1.94
23386974--23387043	21	3.3	21	80	4	68	25	17	8	48	1.75
23387637--23387690	21	2.5	22	85	11	76	48	1	1	48	1.23
23390731--23390795	30	2.2	30	94	0	112	21	6	16	55	1.63
23397198--23397287	47	1.9	47	82	6	112	27	3	7	61	1.40
23398027--23398114	12	7.8	12	74	11	60	5	5	21	67	1.33
23398067--23398114	23	2.2	21	85	7	60	6	4	20	68	1.28
23398071--23398126	12	4.8	12	77	4	51	8	3	21	66	1.35
23397952--23398134	44	4.2	43	70	18	114	6	4	20	67	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23398106--23398147	20	2.0	21	90	4	68	9	0	21	69	1.17
23398214--23398249	19	1.9	19	88	5	56	22	2	5	69	1.22
23402099--23402132	17	2.0	17	100	0	68	17	29	0	52	1.45
23408819--23409214	59	6.8	58	84	5	367	35	1	27	34	1.68
23408837--23409180	59	5.9	59	85	3	430	35	1	28	34	1.68
23408955--23409214	29	8.9	28	74	19	221	33	1	29	35	1.65
23411128--23411163	17	2.1	17	89	0	54	27	5	16	50	1.68
23420324--23420349	12	2.2	12	100	0	52	26	19	15	38	1.91
23422351--23422384	17	2.0	17	88	0	50	32	0	26	41	1.56
23422798--23422825	8	3.5	8	100	0	56	67	0	0	32	0.91
23431971--23432010	2	20.0	2	100	0	80	0	50	0	50	1.00
23435374--23435414	21	1.9	21	90	5	64	17	4	0	78	0.93
23438744--23438768	13	1.9	13	100	0	50	36	16	0	48	1.46
23442816--23443034	113	1.9	113	84	1	287	28	14	24	33	1.94
23446671--23446714	21	2.1	21	86	0	61	63	2	0	34	1.07
23446677--23446726	21	2.3	21	82	3	55	72	2	2	24	1.06
23447866--23447903	6	6.3	6	96	0	67	18	0	47	34	1.49
23451210--23451322	38	2.9	39	80	6	124	35	18	12	33	1.88
23453833--23453877	23	1.9	24	90	4	74	55	6	2	35	1.38
23453943--23453976	13	2.6	13	85	0	50	58	11	0	29	1.33
23460073--23460125	24	2.2	25	89	3	81	43	5	11	39	1.64
23467729--23467805	31	2.5	31	77	14	86	45	2	1	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23468466--23468510	10	4.5	10	83	10	56	35	0	4	60	1.17
23468467--23468510	20	2.1	21	87	4	63	34	0	4	61	1.16
23468976--23469005	15	1.9	16	93	6	53	43	10	0	46	1.37
23470307--23470421	58	2.0	58	86	3	160	36	0	16	46	1.47
23475171--23475224	19	2.9	19	83	8	58	51	3	1	42	1.30
23479738--23479817	39	2.1	36	82	11	90	55	2	2	40	1.27
23482058--23482082	9	2.8	9	100	0	50	92	0	8	0	0.40
23482975--23483007	2	17.0	2	87	6	50	0	51	0	48	1.00
23483369--23483442	11	7.0	11	71	18	59	39	1	2	56	1.22
23483370--23483458	6	15.5	6	72	9	78	40	2	2	55	1.25
23483370--23483458	17	5.2	17	83	2	115	40	2	2	55	1.25
23483381--23483441	23	2.7	22	82	7	77	39	1	3	55	1.26
23483398--23483458	29	2.1	29	84	6	79	42	3	1	52	1.27
23484205--23484256	27	1.9	27	88	0	77	57	5	1	34	1.33
23484518--23484669	82	1.8	83	81	4	191	44	15	14	25	1.85
23485367--23485553	30	6.3	30	69	10	98	39	19	2	37	1.66
23485359--23485621	60	4.5	59	80	5	221	36	20	3	38	1.70
23485452--23485549	29	3.3	29	68	19	76	36	18	3	41	1.66
23485604--23485704	28	3.5	28	78	9	105	38	27	1	31	1.68
23485527--23485771	57	4.2	57	73	11	153	37	25	4	33	1.75
23485604--23485692	28	3.1	28	82	6	108	39	29	2	29	1.69
23491484--23491600	2	58.5	2	100	0	234	0	49	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23498788--23498847	27	2.2	27	80	13	70	63	0	1	35	1.05
23505957--23505986	14	2.1	14	93	0	51	60	0	0	40	0.97
23506464--23506498	6	5.7	6	96	3	61	17	0	0	82	0.66
23515474--23515516	22	1.9	23	85	4	61	34	2	2	60	1.22
23516785--23516856	25	2.8	26	72	8	67	63	2	2	30	1.22
23526601--23526740	20	7.2	18	69	20	70	57	3	2	36	1.31
23526638--23526767	19	6.4	21	69	19	66	57	3	0	37	1.22
23528524--23528572	21	2.4	20	82	3	71	40	8	24	26	1.83
23557831--23558014	98	1.9	99	94	1	325	34	14	10	39	1.81
23559102--23559145	3	14.7	3	90	0	70	34	61	0	4	1.16
23559105--23559160	6	9.3	6	96	0	58	33	53	0	12	1.39
23560107--23560163	10	5.4	11	78	20	59	70	1	3	24	1.13
23560107--23560164	19	2.8	20	82	10	73	68	1	3	25	1.14
23562221--23562273	6	8.8	6	77	8	54	35	0	47	16	1.48
23562233--23562273	18	2.3	18	86	0	64	39	0	43	17	1.49
23562511--23562650	63	2.2	64	88	3	205	35	8	6	50	1.59
23563839--23563884	18	2.5	18	85	3	56	36	17	13	32	1.88
23581222--23581280	30	2.0	31	86	6	86	37	0	40	22	1.54
23581423--23581470	21	2.3	19	82	13	51	45	0	31	22	1.53
23582171--23582233	24	2.6	24	79	0	72	26	12	9	50	1.71
23584145--23584207	24	2.6	24	87	0	81	30	15	4	49	1.66
23584924--23584983	27	2.3	27	85	2	77	30	23	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23585347--23585409	29	2.2	29	97	0	117	33	17	7	41	1.79
23586533--23586566	13	2.6	13	85	0	50	58	11	0	29	1.33
23591947--23591993	2	23.5	2	95	0	85	0	53	0	46	1.00
23592542--23592580	7	5.4	7	81	6	51	66	2	0	30	1.05
23592542--23592580	15	2.7	14	80	7	51	66	2	0	30	1.05
23592684--23592722	20	2.0	19	85	14	53	51	0	2	46	1.14
23593896--23593926	9	3.6	9	91	8	55	61	0	0	38	0.96
23593896--23593932	17	2.2	17	95	0	65	56	0	0	43	0.99
23598879--23598953	6	12.5	6	73	18	59	45	1	1	52	1.17
23598879--23598963	17	5.1	17	81	9	95	47	1	2	49	1.22
23600859--23601150	29	9.9	29	80	8	272	35	23	4	36	1.74
23600911--23601180	147	1.8	148	85	4	384	37	23	2	35	1.70
23600859--23601184	30	11.1	29	78	8	257	36	24	3	35	1.73
23600911--23601231	57	5.5	57	79	7	222	37	23	3	35	1.71
23600988--23601226	30	8.2	29	77	11	175	38	25	2	33	1.71
23601136--23601249	57	2.0	59	85	3	160	37	23	4	34	1.75
23601136--23601266	58	2.3	58	82	5	158	36	22	4	36	1.75
23601342--23601400	28	2.1	28	84	6	75	30	25	10	33	1.89
23607587--23607820	50	4.6	50	68	19	153	44	22	22	11	1.84
23607665--23607820	51	3.1	51	75	12	167	46	21	21	10	1.82
23607579--23607820	101	2.4	101	87	1	351	43	22	22	11	1.84
23607822--23608433	92	6.7	92	93	0	1028	32	16	18	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23608106--23608270	52	3.4	52	68	23	169	33	16	17	32	1.92
23608631--23609067	201	2.2	201	92	0	721	34	19	23	22	1.97
23609434--23609487	18	3.1	17	86	5	63	48	0	3	48	1.19
23611388--23611557	29	5.8	30	80	10	185	35	22	5	35	1.78
23611721--23611851	29	4.6	27	77	16	122	33	26	6	33	1.81
23611729--23611938	57	3.6	57	82	8	203	34	28	5	31	1.81
23611740--23611874	28	4.7	29	83	11	147	36	25	5	32	1.78
23611739--23611879	29	5.0	28	80	7	144	36	27	4	31	1.78
23611729--23611939	58	3.7	57	82	8	180	34	28	5	31	1.81
23612033--23612095	28	2.2	28	85	0	81	33	28	7	30	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120