genome.fa.s5.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  17  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4633068--4633187	58	2.1	58	96	0	222	25	19	12	42	1.86
4633068--4633205	58	2.4	58	91	2	188	25	18	13	43	1.85
4633068--4633232	58	2.8	58	86	1	170	24	16	13	45	1.83
4645505--4645552	17	2.9	17	75	12	55	81	4	10	4	0.97
4646491--4646559	19	3.5	19	77	12	59	71	1	21	5	1.16
4647528--4647647	50	2.4	50	90	0	177	35	18	30	15	1.91
4647773--4647898	40	3.1	41	84	3	137	34	13	17	34	1.89
4647808--4647898	42	2.2	40	88	3	128	37	13	16	32	1.87
4647809--4647912	42	2.5	42	83	4	124	34	15	15	34	1.89
4647902--4648305	39	10.4	37	70	15	201	24	31	19	24	1.98
4647901--4648305	78	5.2	78	79	4	404	23	31	19	24	1.98
4647925--4648318	156	2.5	156	80	4	461	24	31	20	24	1.98
4648329--4649396	210	5.2	211	82	6	1135	37	18	21	22	1.94
4648342--4649493	406	2.8	409	81	7	1265	37	18	21	22	1.94
4649086--4649157	37	1.9	37	82	0	90	34	22	22	20	1.97
4648378--4649537	210	5.7	201	79	7	903	37	18	21	22	1.94
4655504--4655565	31	2.0	31	83	0	79	35	8	9	46	1.66
4656039--4656099	16	3.2	20	76	19	60	36	3	0	60	1.13
4656065--4656096	16	2.0	16	100	0	64	43	0	0	56	0.99
4658960--4659013	17	3.2	16	80	12	63	24	5	3	66	1.29
4660151--4660209	30	2.0	30	86	6	84	13	28	28	28	1.94
4660442--4660518	29	2.6	29	85	8	93	46	11	11	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4665328--4665381	16	3.2	16	85	12	65	68	1	3	25	1.16
4665515--4665561	13	3.5	13	77	13	51	72	8	0	19	1.10
4667703--4667771	29	2.4	29	75	0	75	36	5	23	34	1.79
4667804--4667901	29	3.4	29	87	5	128	28	4	27	39	1.75
4667881--4668100	30	7.4	30	80	9	227	38	0	24	36	1.59
4669684--4669751	6	12.0	6	72	17	56	52	2	1	42	1.25
4669686--4669729	23	2.0	22	95	4	79	50	4	2	43	1.35
4669715--4669749	17	2.1	17	94	0	61	60	2	0	37	1.12
4670162--4670622	78	5.9	78	81	3	489	24	19	31	23	1.98
4670167--4670631	156	3.0	155	84	4	571	24	19	31	23	1.98
4670172--4670622	39	11.6	38	68	15	206	24	19	31	23	1.98
4682841--4682905	29	2.2	30	78	8	71	35	3	26	35	1.72
4682865--4682949	29	2.9	29	84	8	111	31	3	24	40	1.72
4682943--4683018	29	2.6	29	85	2	89	39	0	19	40	1.52
4682934--4683167	30	7.9	30	72	12	115	36	2	22	38	1.66
4682985--4683140	59	2.6	60	82	5	190	35	1	23	39	1.66
4684991--4685158	50	3.3	50	73	13	157	27	21	17	33	1.96
4684994--4685174	101	1.8	100	82	3	238	28	19	18	33	1.96
4691828--4692234	59	6.9	58	83	3	469	35	4	27	32	1.78
4691826--4692225	118	3.4	116	83	3	516	35	5	27	32	1.78
4691826--4692234	177	2.3	177	84	2	520	35	4	27	32	1.78
4691891--4692246	29	12.1	30	73	14	235	35	4	27	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4693384--4693420	12	2.9	12	88	11	56	40	0	2	56	1.13
4694223--4694274	6	9.0	6	76	16	56	51	0	1	46	1.12
4694229--4694274	17	2.7	17	93	0	74	52	0	2	45	1.13
4694222--4694267	23	2.0	23	86	4	65	54	0	2	43	1.12
4701011--4701089	31	2.6	29	78	11	79	64	3	12	18	1.42
4708992--4709211	110	2.0	110	90	0	341	31	12	12	42	1.81
4711565--4711757	51	3.8	51	90	2	289	35	15	21	26	1.94
4712516--4712575	21	2.8	22	85	7	79	36	8	21	33	1.84
4719724--4719756	17	1.9	17	88	11	50	18	6	3	72	1.18
4723876--4723908	17	1.9	17	88	11	50	18	6	3	72	1.18
4731759--4732059	149	2.0	150	96	0	559	39	11	20	27	1.88
4736466--4736496	16	2.0	15	93	6	53	74	0	0	25	0.82
4736461--4736503	11	3.7	11	79	11	50	76	0	0	23	0.78
4736467--4736499	15	2.1	16	88	5	50	78	0	0	21	0.75
4738983--4739077	50	1.9	50	80	8	113	36	6	24	32	1.81
4740514--4740581	29	2.4	29	80	2	84	33	5	1	58	1.31
4740818--4740880	31	2.1	31	85	8	85	19	39	0	41	1.51
4741108--4741144	13	2.8	13	100	0	74	37	0	0	62	0.96
4741939--4742032	6	16.0	6	66	16	54	45	5	2	46	1.37
4741937--4741969	17	1.9	17	100	0	66	42	9	0	48	1.35
4741941--4741997	11	5.0	11	75	8	51	40	5	1	52	1.34
4744626--4744676	16	2.8	19	71	17	54	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4745808--4745945	30	4.7	29	76	10	118	36	27	2	33	1.69
4745808--4745953	29	4.9	29	75	9	109	35	26	2	35	1.68
4745881--4746001	58	2.1	58	80	9	131	36	23	3	36	1.72
4747256--4747599	29	11.8	30	69	13	146	34	26	4	34	1.76
4747329--4747669	59	5.8	58	78	6	305	33	26	5	34	1.79
4762702--4762745	18	2.4	18	80	0	61	61	4	22	11	1.48
4764798--4764836	13	2.8	13	88	7	51	38	2	10	48	1.51
4765411--4765454	23	2.0	23	86	4	63	65	2	6	25	1.28
4767879--4767939	31	2.0	31	90	0	95	32	4	9	52	1.56
4768861--4768925	32	2.0	32	87	0	94	44	16	9	29	1.79
4782963--4783039	25	3.1	25	88	0	100	32	24	18	24	1.97
4784680--4784774	47	2.0	47	95	0	172	45	15	10	28	1.80
4792650--4792709	31	1.9	32	86	3	86	35	11	11	41	1.78
4795145--4795509	29	12.5	30	81	7	317	35	26	3	34	1.73
4795191--4795509	87	3.7	87	84	3	383	36	26	3	33	1.73
4795191--4795506	59	5.4	59	80	5	295	36	27	3	33	1.73
4795641--4795688	16	3.1	15	82	11	53	25	12	4	58	1.52
4795655--4795688	14	2.3	14	90	10	50	26	8	5	58	1.51
4798134--4798207	37	2.0	37	100	0	148	40	16	8	35	1.78
4798140--4798222	37	2.2	36	87	8	114	43	14	7	34	1.73
4801467--4801780	30	10.7	29	81	7	307	36	27	2	33	1.70
4801455--4801779	58	5.5	58	83	6	347	36	27	3	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4809152--4809270	40	2.9	40	84	5	139	41	15	26	17	1.89
4810020--4810740	99	7.3	99	80	2	680	34	17	32	15	1.92
4809925--4810244	148	2.2	148	83	1	381	34	15	30	19	1.93
4809963--4810558	148	4.0	148	78	4	554	34	17	32	16	1.92
4810002--4810740	49	14.9	50	75	6	504	34	17	32	15	1.92
4812954--4813253	30	10.2	29	82	6	293	36	26	2	34	1.71
4817944--4818181	51	4.6	51	92	2	352	29	22	14	32	1.94
4819956--4820152	71	2.8	71	86	4	272	37	26	15	20	1.92
4822297--4822364	35	1.9	35	88	5	102	45	14	14	25	1.83
4822961--4823035	38	2.0	38	94	0	132	36	28	14	21	1.93
4823350--4823386	3	12.7	3	94	5	67	32	0	0	67	0.91
4824819--4824886	30	2.2	30	82	10	84	30	11	13	44	1.79
4832773--4832816	22	2.0	22	90	0	70	36	15	11	36	1.84
4840103--4840141	17	2.3	17	90	0	60	15	12	25	46	1.81
4842661--4842746	38	2.2	40	89	6	131	41	1	5	51	1.33
4843325--4843358	14	2.4	14	90	0	50	70	8	2	17	1.25
4843546--4843574	15	1.9	15	100	0	58	68	0	0	31	0.89
4849459--4849505	24	2.0	24	91	0	76	55	8	12	23	1.64
4856773--4856819	25	2.0	23	87	8	67	59	6	2	31	1.34
4857803--4857843	19	2.2	19	91	4	66	9	14	0	75	1.04
4857820--4857886	19	3.8	17	83	11	82	8	13	2	74	1.17
4857828--4857881	19	2.9	18	94	5	90	11	12	3	72	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4857829--4857886	8	6.6	8	80	18	55	10	12	3	74	1.19
4858773--4858856	6	14.3	6	91	2	109	69	9	1	20	1.23
4858776--4858867	46	2.0	47	95	2	168	69	7	2	20	1.24
4858776--4858867	12	7.8	12	83	7	91	69	7	2	20	1.24
4861710--4861740	13	2.4	13	94	0	53	77	0	0	22	0.77
4861710--4861748	13	3.1	12	85	7	51	71	0	2	25	0.98
4862828--4862873	24	1.9	23	86	8	65	56	6	4	32	1.45
4863575--4863610	17	2.1	17	94	0	63	33	2	25	38	1.70
4864630--4864667	13	3.0	13	84	3	51	52	18	0	28	1.45
4864834--4864864	2	15.5	2	100	0	62	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120