genome.fa.s5.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  52  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15047350--15047525	24	7.3	24	78	3	156	24	18	24	32	1.97
15047349--15047492	48	3.0	48	86	2	198	23	18	24	33	1.97
15047345--15047517	73	2.4	73	84	0	220	24	18	23	32	1.97
15058869--15059127	75	3.4	76	84	7	335	47	8	11	32	1.70
15058864--15059155	75	3.8	74	81	9	309	47	9	11	31	1.72
15064526--15064707	51	3.6	50	81	8	199	29	22	15	32	1.95
15066360--15066700	150	2.3	147	86	4	454	45	11	2	41	1.51
15066620--15066679	23	2.7	23	76	7	61	40	8	0	51	1.32
15067132--15067161	3	10.0	3	100	0	60	66	0	0	33	0.92
15071829--15072167	51	6.6	51	90	1	491	30	22	13	32	1.93
15087293--15087342	24	2.1	24	84	0	64	54	4	14	28	1.58
15087575--15087678	17	6.1	17	83	0	118	36	0	4	57	1.26
15088378--15088430	3	17.0	3	76	7	52	64	3	0	32	1.12
15088378--15088424	19	2.5	19	89	6	69	61	4	0	34	1.15
15088378--15088437	22	2.8	22	80	5	61	66	3	0	30	1.07
15088398--15088431	16	2.1	16	88	0	50	70	0	0	29	0.87
15089540--15089624	30	2.9	29	84	5	116	40	27	1	31	1.64
15089723--15089822	27	3.7	27	89	4	148	32	26	11	31	1.91
15097275--15097314	21	1.9	21	89	0	62	27	37	5	30	1.78
15103221--15103263	18	2.4	18	80	0	50	2	18	2	76	1.00
15115069--15115231	80	2.0	80	98	0	317	16	20	28	34	1.94
15115412--15115468	21	2.8	20	84	7	69	14	12	33	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15115409--15115476	21	3.2	21	77	8	66	13	10	33	42	1.78
15123635--15123695	30	2.0	31	81	9	72	50	1	0	47	1.10
15132484--15132541	30	1.9	30	96	0	107	32	20	15	31	1.94
15132514--15132681	48	3.5	48	83	6	214	34	21	14	29	1.93
15139679--15139896	48	4.5	48	85	1	240	33	21	13	31	1.92
15139721--15139896	96	1.8	96	90	0	280	32	22	13	31	1.93
15140057--15140101	8	5.5	8	84	5	54	31	26	2	40	1.68
15151059--15151099	14	2.7	16	85	11	59	75	0	14	9	1.04
15160415--15160455	20	2.0	20	95	0	73	48	12	14	24	1.78
15164346--15164383	18	2.1	19	90	5	60	13	5	26	55	1.59
15164517--15164572	29	1.9	29	88	0	85	26	10	28	33	1.90
15172235--15172303	3	23.0	3	100	0	138	66	0	33	0	0.92
15181546--15181603	25	2.4	25	83	13	84	36	8	3	51	1.49
15182290--15182325	16	2.2	17	90	5	56	2	0	16	80	0.83
15182619--15182657	18	2.2	18	100	0	78	35	5	15	43	1.69
15188508--15188569	24	2.5	25	86	2	81	27	24	6	41	1.79
15190334--15190603	135	2.0	134	81	3	310	17	15	8	59	1.60
15191451--15191491	6	6.7	6	86	5	55	80	0	17	2	0.82
15191444--15191492	19	2.5	19	80	3	62	79	0	14	6	0.91
15191704--15191743	6	6.7	6	94	0	71	32	0	2	65	1.06
15192338--15192385	6	7.7	6	84	9	60	4	16	0	79	0.89
15192334--15192385	20	2.6	20	81	6	61	3	17	0	78	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15192439--15192493	27	2.0	27	85	0	74	30	43	1	23	1.64
15193386--15193415	15	2.0	15	93	0	51	50	0	0	50	1.00
15208727--15208765	17	2.4	17	86	4	53	20	10	12	56	1.65
15213886--15213944	8	7.2	8	76	17	59	61	1	0	37	1.07
15213884--15213944	17	3.8	15	75	23	61	62	1	0	36	1.05
15223172--15223211	19	2.1	19	95	0	71	47	2	0	50	1.14
15233276--15233346	34	2.1	35	83	2	90	21	22	7	49	1.73
15233292--15233359	18	3.8	18	69	11	59	17	22	8	51	1.72
15237408--15237442	18	2.1	17	89	10	54	25	28	22	22	1.99
15241927--15241978	24	2.2	24	100	0	104	48	28	11	11	1.74
15265326--15265372	15	3.2	15	80	17	53	14	4	8	72	1.24
15281156--15281188	14	2.2	16	89	10	52	60	0	39	0	0.97
15290454--15290496	21	2.0	21	90	0	68	13	11	11	62	1.54
15292881--15292973	37	2.4	38	80	8	100	21	22	27	27	1.99
15299004--15299096	37	2.4	38	80	8	100	21	22	27	27	1.99
15302192--15302271	22	3.6	22	86	1	97	12	25	26	36	1.91
15322787--15322833	20	2.4	19	80	16	51	65	8	2	23	1.31
15326430--15326477	17	2.9	17	78	3	53	70	4	0	25	1.04
15326928--15326968	16	2.4	16	88	12	55	17	4	2	75	1.08
15327032--15327080	20	2.5	20	84	12	66	20	14	12	53	1.73
15327506--15327544	20	1.9	21	84	5	53	28	17	2	51	1.59
15327886--15327929	22	2.0	21	87	12	63	50	0	6	43	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15328082--15328120	21	1.9	20	84	5	51	56	5	12	25	1.57
15328422--15328474	21	2.6	20	81	3	61	50	7	18	22	1.72
15328429--15328494	19	3.3	20	76	6	62	51	10	19	18	1.75
15329766--15329807	2	21.0	2	100	0	84	0	50	0	50	1.00
15337071--15337104	9	3.8	9	84	0	50	50	17	5	26	1.69
15337067--15337103	18	2.1	18	100	0	74	51	16	5	27	1.66
15337680--15337745	29	2.3	29	82	12	82	54	0	1	43	1.09
15337978--15338362	198	1.9	198	89	1	592	30	20	8	40	1.82
15340978--15341024	16	2.9	16	77	0	58	44	14	10	29	1.79
15341148--15341174	4	6.8	4	100	0	54	77	0	0	22	0.76
15352662--15352711	18	2.8	18	87	6	66	30	2	0	68	1.01
15357555--15357588	17	2.1	17	88	5	52	35	0	14	50	1.44
15362973--15363018	18	2.6	18	82	6	58	26	39	4	30	1.75
15363298--15363521	59	3.7	59	79	6	243	34	7	8	49	1.62
15367736--15368059	24	13.7	24	77	6	194	37	15	25	21	1.92
15367736--15367882	47	3.1	47	82	8	158	34	18	27	19	1.95
15367759--15368062	72	4.3	72	76	5	269	37	14	25	22	1.92
15367876--15368081	24	8.6	24	78	2	153	40	13	23	22	1.89
15369015--15369050	8	4.5	8	92	0	54	50	16	0	33	1.46
15369016--15369050	12	2.9	12	91	0	61	51	17	0	31	1.45
15369016--15369046	4	7.8	4	92	0	53	51	19	0	29	1.47
15371761--15371792	3	10.7	3	100	0	64	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15377885--15377965	29	2.8	29	86	0	117	39	18	16	25	1.91
15386620--15386830	45	4.7	45	74	10	180	36	15	20	27	1.93
15390221--15390286	3	23.3	3	74	11	59	63	3	31	1	1.19
15390371--15390414	11	3.8	11	82	11	52	0	25	2	72	0.96
15394425--15394468	15	2.9	15	83	6	54	61	2	31	4	1.28
15401661--15401749	42	2.1	42	81	8	101	20	8	5	65	1.41
15403052--15403152	47	2.2	44	84	6	123	25	17	22	33	1.96
15403126--15403263	42	3.4	41	82	7	158	28	16	27	26	1.97
15403316--15403575	50	5.2	49	75	5	209	35	16	29	19	1.94
15403303--15403672	99	3.7	99	81	3	370	35	15	29	19	1.93
15403344--15403578	49	4.7	50	74	6	190	35	15	28	20	1.93
15403303--15403671	198	1.9	197	80	4	429	35	15	29	19	1.93
15403911--15404347	39	11.0	39	79	8	445	31	27	16	24	1.96
15405246--15405301	6	8.7	6	77	14	58	0	23	0	76	0.78
15405246--15405309	33	2.0	33	87	6	96	0	25	0	75	0.81
15406154--15406192	19	1.9	19	85	10	51	5	15	5	74	1.17
15410284--15410335	25	2.1	25	85	0	68	59	0	0	40	0.97
15417606--15417658	20	2.7	20	76	5	54	32	7	18	41	1.79
15418297--15418462	60	2.8	59	77	11	167	42	6	14	37	1.70
15421220--15421275	21	2.6	22	78	13	62	46	5	8	39	1.58
15423622--15423677	21	2.6	22	78	13	62	46	5	8	39	1.58
15424746--15424787	22	1.9	22	90	0	66	45	4	7	42	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15430738--15430805	30	2.3	30	75	12	77	32	25	23	19	1.97
15430749--15430812	15	4.3	15	77	0	65	28	23	25	23	2.00
15431738--15431962	112	2.0	112	89	0	342	20	21	20	36	1.95
15436758--15436805	17	2.8	17	84	6	62	18	16	31	33	1.94
15438203--15438263	27	2.3	27	85	0	86	40	8	24	26	1.83
15440475--15440513	3	13.0	3	84	10	53	33	2	0	64	1.08
15440958--15441069	47	2.4	47	80	12	117	51	1	7	39	1.40
15440925--15441438	148	3.6	136	77	11	415	44	3	9	42	1.54
15441191--15441225	18	2.0	18	88	5	54	45	0	8	45	1.34
15442000--15442030	16	1.9	16	100	0	62	19	12	0	67	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120