genome.fa.s5.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Length:  37252039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  35  of  120  ( 14335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9072291--9072361	23	3.0	23	81	8	72	25	23	1	49	1.59
9086424--9086448	9	2.8	9	100	0	50	12	20	0	68	1.21
9087527--9087597	19	3.7	19	75	17	67	59	1	4	35	1.26
9087527--9087596	20	3.6	20	78	14	76	60	1	4	34	1.25
9087579--9087706	34	3.6	36	71	14	122	45	2	1	50	1.23
9087574--9087641	22	3.0	22	75	12	66	50	1	0	48	1.10
9088031--9088065	16	2.1	17	89	5	54	25	8	2	62	1.38
9088158--9088216	22	2.8	21	82	10	75	27	1	0	71	0.96
9088189--9088214	12	2.2	12	100	0	52	23	0	0	76	0.78
9088152--9088214	31	2.0	32	81	3	74	26	3	0	69	1.03
9090020--9090044	3	8.3	3	100	0	50	64	0	0	36	0.94
9098133--9098166	17	1.9	18	88	5	52	50	0	0	50	1.00
9101985--9102039	21	2.4	24	88	8	80	38	25	10	25	1.88
9102678--9102910	52	4.5	52	91	0	333	34	24	14	26	1.94
9108219--9108335	62	1.9	60	84	5	155	49	4	1	44	1.32
9108320--9108374	25	2.2	25	81	12	60	49	5	1	43	1.36
9113195--9113273	38	2.1	38	88	4	115	29	16	11	43	1.83
9114766--9114817	25	2.0	27	85	7	72	25	5	15	53	1.63
9120141--9120188	22	2.2	21	78	10	51	22	20	2	54	1.55
9124098--9124217	39	3.1	38	83	7	143	23	16	30	29	1.96
9124435--9124987	49	11.3	49	74	5	436	20	26	16	36	1.93
9124432--9124997	98	5.8	98	87	0	772	20	25	16	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9125909--9125937	14	2.0	15	93	6	51	0	10	0	89	0.48
9131302--9131340	20	2.1	18	85	9	51	53	0	10	35	1.35
9135083--9135124	19	2.2	20	86	4	59	42	0	33	23	1.55
9143097--9143460	180	2.0	180	98	0	710	28	22	15	33	1.95
9147096--9147149	24	2.2	24	83	0	72	27	3	5	62	1.34
9152573--9152615	19	2.2	20	87	4	61	58	2	0	39	1.11
9159388--9159443	21	2.7	21	78	13	62	30	10	28	30	1.91
9166447--9166597	28	5.2	29	83	5	173	33	23	5	37	1.77
9166458--9166617	58	2.8	55	81	9	169	33	22	5	38	1.78
9175537--9175703	85	2.0	85	82	7	205	37	16	22	23	1.93
9175458--9176194	209	3.5	210	89	1	1101	38	17	21	22	1.93
9175751--9175913	85	1.9	85	85	0	227	39	15	22	22	1.92
9175956--9176118	85	1.9	85	88	0	245	36	15	23	23	1.94
9176009--9176515	160	3.1	157	81	8	572	37	16	22	23	1.94
9176200--9176291	48	1.9	48	86	4	132	39	15	23	21	1.92
9176322--9176444	48	2.6	48	89	2	185	34	15	25	24	1.94
9178396--9178626	30	7.7	29	79	8	187	35	22	2	39	1.68
9178418--9178623	60	3.4	60	86	4	299	34	22	1	41	1.65
9178859--9178897	19	2.1	19	85	0	51	28	12	5	53	1.60
9191717--9191767	3	17.0	3	100	0	102	0	33	0	66	0.92
9195687--9197400	428	4.0	428	97	0	3171	40	15	23	20	1.90
9205702--9206118	81	5.1	81	86	0	557	32	27	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9205702--9206150	39	11.0	40	71	12	263	32	26	16	25	1.96
9208704--9208733	14	2.1	14	100	0	60	33	13	0	53	1.40
9211383--9211421	17	2.4	16	87	12	53	53	30	7	7	1.57
9212147--9212279	43	3.1	43	87	3	178	34	23	9	33	1.86
9212790--9212817	2	14.0	2	100	0	56	50	0	0	50	1.00
9212817--9212870	2	27.0	2	100	0	108	0	0	50	50	1.00
9223902--9223970	28	2.5	28	85	0	93	26	18	13	42	1.87
9230661--9230702	2	21.0	2	100	0	84	50	0	0	50	1.00
9231336--9231378	21	2.0	21	82	8	52	27	4	4	62	1.35
9235654--9235709	26	2.2	26	96	3	105	37	19	16	26	1.92
9242348--9242499	75	2.0	75	96	0	277	28	13	22	36	1.91
9250507--9250595	40	2.2	40	86	4	117	34	16	17	30	1.93
9256825--9256854	9	3.4	9	95	4	53	0	20	0	80	0.72
9280296--9280421	43	2.9	43	84	2	146	24	19	26	29	1.98
9280816--9280986	40	4.3	40	78	3	173	36	20	17	25	1.94
9280902--9280968	23	3.2	22	67	30	56	34	19	14	31	1.92
9285180--9285208	15	1.9	15	100	0	58	34	17	0	48	1.47
9294867--9294914	24	2.0	25	84	12	64	47	10	20	20	1.79
9297683--9297755	29	2.5	30	82	13	89	52	1	2	43	1.24
9298233--9298291	30	2.0	30	89	0	91	30	0	20	49	1.49
9298806--9298900	49	1.9	50	82	2	120	64	1	0	34	1.01
9301443--9301571	65	2.0	63	95	3	231	38	19	7	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9301627--9301714	39	2.2	40	89	4	142	35	22	5	36	1.78
9303304--9304544	186	6.7	186	86	2	1564	27	20	16	35	1.95
9323478--9323548	37	1.9	37	100	0	142	30	19	22	26	1.98
9323612--9323710	43	2.3	43	84	5	130	25	29	22	23	1.99
9323993--9324049	21	2.7	21	88	0	87	3	45	17	33	1.65
9324007--9324044	11	3.5	11	80	20	53	0	47	23	28	1.52
9324035--9324188	66	2.3	66	89	0	236	16	24	16	43	1.87
9329677--9329756	8	9.8	8	76	15	67	55	0	1	43	1.08
9329675--9329756	4	20.0	4	69	14	51	54	0	1	43	1.07
9329676--9329811	22	6.3	22	70	17	79	52	0	1	44	1.15
9329834--9330226	18	21.6	18	66	12	99	47	4	2	45	1.34
9329734--9330581	113	7.7	110	85	7	901	48	4	2	45	1.35
9329685--9329921	12	19.6	12	65	18	82	51	2	1	44	1.26
9330149--9330222	10	7.7	10	69	18	50	51	4	0	44	1.20
9330053--9330245	45	3.9	48	67	22	123	48	4	1	45	1.32
9330285--9330329	18	2.4	19	82	14	58	46	2	2	48	1.26
9330398--9330435	18	2.1	18	85	9	51	42	0	5	52	1.24
9330399--9330469	14	5.6	12	76	17	54	43	2	2	50	1.31
9330437--9330634	44	4.3	45	70	12	125	51	4	1	43	1.29
9330494--9330582	8	10.0	9	68	17	53	57	2	0	40	1.11
9330452--9330583	62	2.1	61	84	5	167	53	2	0	43	1.18
9330494--9330583	18	5.6	18	70	22	74	56	2	0	41	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9330505--9330604	26	3.7	26	78	16	96	54	3	0	43	1.16
9330870--9330919	18	2.8	18	81	0	73	50	2	0	48	1.12
9330870--9331075	8	26.2	8	61	18	58	50	4	0	44	1.25
9330905--9331121	54	4.2	51	67	20	132	50	5	0	43	1.30
9330906--9331420	76	7.2	76	72	17	478	48	5	1	44	1.32
9331052--9331427	135	2.8	135	96	0	682	48	5	1	45	1.32
9331381--9331438	8	7.2	8	74	14	57	58	1	0	39	1.08
9331394--9331521	18	6.9	18	73	15	82	54	4	0	39	1.27
9331321--9331521	94	2.1	94	96	0	366	52	4	0	41	1.30
9331351--9331516	32	5.3	31	73	18	105	52	4	1	41	1.30
9334021--9334046	13	2.0	13	100	0	52	15	7	23	53	1.67
9334186--9334218	16	2.1	16	88	11	50	30	6	0	63	1.18
9335309--9335548	41	5.9	41	84	3	288	24	27	20	27	1.99
9335326--9335588	41	6.4	41	83	6	257	22	26	22	28	1.99
9335291--9335562	82	3.3	81	80	5	309	23	26	23	26	2.00
9335291--9335590	41	7.4	41	81	8	156	22	26	23	27	2.00
9344264--9344292	11	2.7	11	94	5	51	20	17	24	37	1.93
9344864--9344902	13	3.0	13	82	10	53	76	0	23	0	0.78
9348697--9348727	8	3.9	8	95	0	53	74	12	9	3	1.19
9354386--9354689	80	3.8	80	89	0	421	30	25	19	24	1.98
9362062--9362343	80	3.5	79	85	3	361	31	24	19	24	1.98
9368830--9368888	31	1.9	32	86	6	86	55	5	13	25	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9369389--9369458	14	4.9	14	73	19	56	18	2	4	74	1.11
9369419--9369463	18	2.5	19	85	7	58	17	2	4	75	1.07
9369724--9369771	19	2.7	18	80	6	53	29	6	8	56	1.53
9373893--9373948	20	2.8	20	76	10	69	21	14	10	53	1.70
9374536--9375076	100	5.5	100	81	3	608	38	19	17	24	1.93
9375238--9375272	17	2.1	17	100	0	70	22	34	11	31	1.90
9375631--9375710	34	2.4	34	100	0	160	30	27	11	31	1.91
9377128--9377231	22	4.9	21	71	21	65	21	4	0	73	1.08
9377163--9377216	4	14.2	4	83	11	51	18	5	0	75	0.98
9377129--9377213	22	4.0	22	76	13	72	21	4	0	74	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120