genome.fa.s101.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  10  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
992518--992555	12	3.2	12	92	7	60	2	13	0	84	0.73
992558--992592	17	2.2	16	90	10	54	8	14	0	77	0.99
996437--996826	58	6.7	58	87	4	522	33	13	7	45	1.72
996437--996827	114	3.4	113	86	7	552	32	13	7	46	1.71
996437--996829	172	2.3	174	89	3	612	32	13	7	46	1.71
996871--996920	11	4.5	11	84	0	64	82	4	2	12	0.90
996860--996928	6	11.8	6	71	17	56	79	2	4	13	0.99
996954--997007	7	7.4	7	82	10	56	81	3	0	14	0.82
996950--996981	14	2.2	15	94	5	57	75	3	0	21	0.95
998313--998412	1	100.0	1	71	0	56	9	0	7	84	0.79
998304--998394	8	11.8	8	76	19	86	9	0	8	81	0.88
998313--998411	6	16.7	6	76	17	68	9	0	7	83	0.80
998323--998412	14	6.7	14	74	14	66	8	0	7	83	0.82
998305--998407	54	1.9	53	88	9	156	9	0	7	82	0.84
998305--998407	53	1.9	54	88	9	158	9	0	7	82	0.84
998304--998413	47	2.5	43	76	21	88	10	0	8	81	0.86
998419--998830	83	5.0	82	88	5	589	35	23	17	22	1.95
998419--998830	124	3.3	124	89	6	595	35	23	17	22	1.95
998419--998830	41	10.0	41	87	6	564	35	23	17	22	1.95
1000030--1000073	8	5.8	8	84	10	65	9	11	0	79	0.93
1000030--1000103	14	5.0	14	83	8	85	9	13	0	77	1.00
1003940--1004137	58	3.4	57	90	4	299	33	13	8	44	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1004123--1004152	15	2.0	15	93	0	51	30	20	0	50	1.49
1004065--1004209	72	2.0	73	90	1	229	30	14	5	49	1.66
1004007--1004267	130	2.0	131	89	3	402	31	13	6	48	1.69
1004138--1004347	61	3.6	57	83	6	276	31	13	6	47	1.69
1003949--1004328	188	2.0	190	89	3	586	32	13	7	46	1.70
1004138--1004330	58	3.3	58	85	4	219	32	13	6	47	1.70
1004380--1004523	11	12.9	11	68	20	52	75	4	3	16	1.09
1004478--1004521	7	6.4	7	82	12	56	84	2	0	13	0.73
1004474--1004515	14	3.0	14	90	10	68	78	2	0	19	0.86
1004886--1004912	11	2.5	11	100	0	54	14	22	48	14	1.81
1006084--1006168	33	2.5	35	73	24	83	63	3	4	28	1.31
1008515--1008573	23	2.6	22	78	7	64	35	1	0	62	1.05
1009959--1010050	40	2.2	40	86	3	121	25	19	8	46	1.78
1018519--1018623	50	2.1	50	80	3	113	38	20	10	30	1.87
1018682--1018735	12	4.8	12	81	4	51	72	1	1	24	1.05
1018682--1018741	11	5.4	11	80	4	57	73	1	1	23	1.01
1019646--1019677	2	16.0	2	93	0	55	50	3	0	46	1.17
1028826--1029426	144	4.2	143	84	5	789	34	15	22	26	1.94
1028826--1029426	287	2.1	288	89	2	922	34	15	22	26	1.94
1037027--1037071	22	2.0	22	83	8	56	51	0	6	42	1.28
1037413--1037509	49	2.0	49	95	0	176	47	2	8	42	1.45
1037528--1037567	20	1.9	22	85	10	57	42	2	0	55	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1038398--1038443	22	2.2	22	88	7	69	43	0	6	50	1.28
1039187--1039225	16	2.6	16	84	8	55	28	15	0	56	1.40
1039191--1039226	16	2.2	16	95	0	63	25	13	0	61	1.33
1042653--1042678	7	3.7	7	100	0	52	11	0	0	88	0.52
1042645--1042678	14	2.4	14	90	0	50	8	0	5	85	0.75
1042716--1042942	41	5.4	41	81	8	235	47	20	9	22	1.78
1042677--1042963	83	3.4	83	81	6	285	47	19	9	23	1.79
1042716--1042989	42	6.6	42	80	8	200	47	18	9	23	1.79
1042936--1043046	57	1.9	57	87	3	161	46	13	12	27	1.79
1042895--1043088	99	2.0	98	89	1	298	47	14	12	25	1.79
1042993--1043262	42	6.3	43	94	3	422	45	18	12	22	1.83
1043688--1043791	24	4.4	23	81	7	120	28	3	1	65	1.21
1043716--1043765	22	2.4	20	81	12	64	30	6	0	64	1.18
1043688--1043790	46	2.2	46	84	6	127	29	3	1	65	1.21
1043791--1043858	3	21.7	3	76	16	50	29	4	1	64	1.21
1043791--1043851	17	3.4	17	81	6	59	29	4	1	63	1.24
1043791--1043859	20	3.6	20	82	11	90	28	4	1	65	1.21
1043791--1043877	20	4.5	19	81	12	88	27	5	2	64	1.28
1043878--1043919	20	2.1	20	86	0	57	19	4	0	76	0.96
1044689--1044739	14	4.0	13	76	19	54	19	0	1	78	0.85
1044701--1044738	5	7.8	5	83	16	53	18	0	0	81	0.69
1044736--1044916	58	3.1	56	80	9	193	43	7	11	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1044844--1044987	73	2.0	73	94	0	252	39	9	11	40	1.72
1044902--1044931	15	2.0	15	100	0	60	26	20	6	46	1.75
1044786--1045043	131	2.0	131	92	2	430	40	7	12	39	1.71
1044917--1045043	57	2.2	58	91	1	202	40	7	12	39	1.72
1046155--1046361	70	2.9	71	84	4	276	29	25	8	36	1.86
1046978--1047034	25	2.2	27	78	15	66	1	19	0	78	0.83
1046986--1047034	11	3.9	12	77	17	55	2	16	0	81	0.78
1047380--1047411	13	2.4	14	94	5	57	0	12	6	81	0.87
1049303--1049347	20	2.2	20	88	0	63	13	20	17	48	1.80
1049986--1050035	17	3.0	16	80	14	57	50	4	20	26	1.66
1051557--1051609	25	2.0	26	82	7	63	41	5	1	50	1.36
1052328--1052361	9	3.8	9	84	0	50	8	11	2	76	1.12
1059899--1059959	25	2.4	26	80	17	67	52	1	0	45	1.10
1064261--1064356	16	6.1	15	72	21	65	15	3	3	78	1.01
1064268--1064356	6	14.7	6	68	21	53	15	2	3	78	0.98
1064271--1064359	8	11.1	8	71	12	51	16	2	3	77	1.01
1064268--1064325	23	2.6	22	89	7	91	15	1	3	79	0.95
1064478--1064543	22	3.0	22	80	13	82	25	4	6	63	1.37
1064478--1064517	11	3.5	12	75	25	50	27	5	5	62	1.37
1064511--1064564	9	6.1	9	80	2	56	24	1	3	70	1.13
1064478--1064564	18	4.5	19	80	11	81	25	3	4	66	1.26
1065414--1065521	5	21.6	5	70	16	55	15	5	1	76	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1065423--1065521	18	5.4	17	74	23	69	14	6	2	77	1.04
1065433--1065521	33	2.6	34	79	12	103	13	5	2	78	1.02
1065439--1065491	8	6.1	8	79	16	61	11	3	1	83	0.87
1065436--1065526	38	2.4	37	82	8	105	14	5	2	78	1.03
1065436--1065521	12	6.9	13	72	13	58	13	4	2	79	1.00
1065536--1065804	57	4.7	57	80	6	285	43	6	12	37	1.68
1077256--1077351	41	2.3	41	96	0	174	22	16	22	37	1.94
1077286--1077547	41	6.4	41	84	2	233	22	16	22	38	1.92
1077555--1077584	12	2.4	12	94	5	51	90	10	0	0	0.47
1077735--1077781	6	8.2	6	77	17	55	17	2	0	80	0.80
1077735--1077784	22	2.3	21	89	3	73	18	2	0	80	0.82
1077920--1077967	22	2.2	22	85	7	62	37	6	2	54	1.38
1077926--1077968	22	2.0	21	90	4	68	37	4	0	58	1.19
1077953--1078022	18	3.7	18	81	10	61	24	2	4	68	1.21
1077976--1078023	9	5.2	9	87	2	69	20	2	4	72	1.11
1078909--1078991	9	8.7	9	73	16	53	13	7	2	77	1.08
1078892--1078981	33	2.7	32	75	11	83	13	8	2	75	1.13
1078982--1079446	58	8.1	57	79	10	291	43	7	13	36	1.72
1079006--1079448	57	7.7	56	82	5	458	42	7	13	36	1.73
1080431--1080588	79	2.0	79	94	0	280	43	20	9	25	1.82
1081252--1081283	14	2.3	14	94	0	55	56	15	6	21	1.62
1081294--1081351	15	3.5	15	71	24	53	50	13	5	31	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1082069--1082124	18	3.3	18	72	20	50	71	5	0	23	1.06
1082705--1082962	42	6.1	41	85	3	291	24	15	22	37	1.92
1082705--1082962	83	3.1	83	84	6	308	24	15	22	37	1.92
1082970--1083007	12	3.1	12	85	14	51	86	10	2	0	0.66
1082982--1083007	11	2.4	11	100	0	52	92	7	0	0	0.39
1083287--1083339	21	2.7	19	86	13	65	37	0	3	58	1.16
1083278--1083336	17	3.5	16	73	17	57	38	0	3	57	1.15
1083346--1083429	44	1.9	43	81	11	100	19	5	7	67	1.35
1083390--1083451	19	2.8	23	79	20	71	14	8	8	69	1.36
1083402--1083449	19	2.4	19	93	6	78	12	8	8	70	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117