genome.fa.s101.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  76  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13590249--13591526	700	1.8	696	79	6	1505	42	9	8	39	1.67
13590865--13592271	181	7.8	181	75	6	955	42	9	8	39	1.68
13591073--13592265	539	2.2	537	78	6	1171	42	9	8	40	1.67
13592279--13594148	360	5.2	358	76	9	1352	42	9	8	40	1.67
13592486--13597458	181	28.0	179	72	11	2434	42	9	7	40	1.66
13594165--13597482	363	9.3	358	75	8	2325	42	9	7	40	1.65
13597066--13597121	24	2.4	23	79	11	60	57	3	1	37	1.27
13597545--13600269	362	7.7	358	73	9	1351	41	9	8	40	1.67
13598174--13599197	180	5.7	180	75	6	804	40	9	8	41	1.68
13599227--13600290	181	5.9	181	77	4	901	42	8	8	40	1.66
13600861--13601974	179	6.2	176	76	8	836	39	7	9	42	1.67
13601120--13601974	357	2.4	358	77	5	852	40	7	9	41	1.67
13602229--13603167	176	5.3	175	77	9	909	38	7	10	43	1.67
13602225--13603996	532	3.4	525	78	9	1697	39	7	10	42	1.68
13603301--13604569	181	7.1	180	75	8	1058	39	8	10	42	1.69
13604612--13605939	181	7.5	179	74	8	928	40	10	7	41	1.69
13604612--13605553	361	2.6	352	81	7	1010	41	9	7	41	1.65
13606318--13606538	120	1.8	120	84	5	304	34	10	9	45	1.71
13606438--13608004	181	8.7	180	77	5	1210	41	9	8	40	1.68
13606442--13607607	360	3.2	357	79	6	1081	40	10	8	40	1.69
13608491--13614226	181	31.8	180	71	11	2182	41	9	8	40	1.67
13608491--13614242	362	15.9	361	74	9	3245	41	9	7	40	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13611178--13611596	182	2.3	181	79	6	436	39	10	7	42	1.68
13611649--13617787	540	11.5	539	72	11	2314	41	9	7	40	1.66
13614269--13615632	180	7.7	172	73	12	556	41	10	7	40	1.68
13616219--13617974	180	9.8	181	76	7	1333	41	9	7	41	1.66
13614281--13617790	357	9.8	353	75	9	1821	41	9	7	40	1.67
13617846--13618113	140	1.9	141	83	2	351	41	5	8	44	1.59
13618062--13618100	18	2.1	18	85	4	51	58	2	5	33	1.33
13618307--13618354	17	2.7	19	78	15	57	47	6	6	39	1.54
13618664--13622827	181	22.8	181	71	10	2004	41	10	8	40	1.68
13620816--13620921	18	6.0	18	69	23	73	39	11	8	40	1.72
13620810--13620917	53	2.0	53	100	0	216	41	11	7	39	1.69
13620458--13621222	414	1.8	412	81	6	947	41	9	8	40	1.67
13620276--13621357	595	1.8	595	80	4	1297	40	9	8	41	1.68
13621443--13622469	537	1.9	539	85	3	1440	43	11	7	38	1.68
13620955--13622828	540	3.5	538	78	6	1478	42	10	8	38	1.69
13622579--13623105	268	2.0	267	90	0	829	42	11	8	37	1.72
13622856--13623253	179	2.2	177	78	7	412	42	10	7	39	1.69
13624821--13625681	361	2.4	362	77	8	786	43	9	7	39	1.65
13624821--13625857	181	5.8	177	75	9	786	43	9	7	39	1.66
13625188--13625857	348	1.9	347	78	3	722	43	10	8	38	1.68
13627088--13627139	18	2.9	18	72	13	54	40	11	5	42	1.65
13626319--13628917	180	14.5	180	74	10	1582	41	10	8	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13629041--13629551	179	2.8	177	74	8	440	40	10	8	40	1.70
13629571--13633318	179	21.0	178	74	10	2305	41	10	8	40	1.68
13633259--13633426	87	1.9	87	89	2	257	44	7	7	41	1.59
13633506--13634324	360	2.3	359	80	7	890	40	8	9	41	1.68
13633506--13634590	181	6.1	180	77	6	902	40	9	9	41	1.69
13634495--13634775	156	1.8	153	80	5	332	38	11	9	41	1.73
13636024--13636049	11	2.4	11	100	0	52	57	7	0	34	1.27
13636339--13636377	19	2.0	21	90	10	64	41	2	10	46	1.51
13636041--13638711	361	7.4	359	76	7	1995	41	9	8	40	1.68
13634619--13638705	181	22.6	179	74	9	2351	42	9	8	39	1.68
13638742--13638787	21	2.1	22	88	4	67	60	4	10	23	1.47
13638789--13639820	177	5.8	177	76	7	738	42	8	8	40	1.66
13638789--13639738	354	2.7	353	79	7	834	41	8	8	40	1.66
13640459--13640892	177	2.5	175	78	6	428	41	7	10	41	1.67
13640896--13642158	527	2.4	531	79	6	1257	38	7	9	43	1.67
13641678--13642476	182	4.4	182	75	7	477	39	8	10	42	1.68
13642375--13642651	145	1.9	146	87	0	403	40	10	10	38	1.75
13642532--13643523	179	5.5	180	77	9	856	42	7	10	40	1.67
13642784--13643487	181	3.8	189	76	11	604	41	6	10	41	1.65
13642795--13643504	363	1.9	362	82	5	876	41	7	10	41	1.66
13643567--13652363	181	48.7	180	70	11	3387	40	8	10	41	1.69
13643687--13647168	361	9.7	353	72	11	1320	39	8	10	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13643880--13648335	542	8.3	541	74	10	1515	39	8	10	41	1.69
13644949--13645275	169	1.9	168	82	6	401	40	6	11	41	1.68
13645466--13646078	178	3.5	172	74	13	402	40	8	7	43	1.64
13645821--13647345	178	8.5	175	74	9	573	40	8	9	40	1.69
13645118--13647380	182	12.6	181	75	8	1413	40	8	9	41	1.69
13646132--13647290	540	2.1	540	78	5	1205	40	8	10	40	1.71
13648189--13648466	152	1.8	152	79	4	319	40	9	12	37	1.75
13648835--13659382	181	58.5	180	73	10	5753	40	8	9	41	1.68
13648833--13659382	361	29.3	358	73	9	6198	40	8	9	41	1.68
13653224--13653533	165	1.9	164	83	6	399	40	6	10	42	1.65
13653381--13659382	180	33.1	181	71	11	2946	40	8	9	41	1.67
13656155--13656259	54	1.9	54	92	0	174	46	6	16	30	1.72
13659381--13662568	181	17.7	180	76	6	2383	39	8	10	42	1.69
13659596--13666440	721	9.6	718	73	10	2336	40	8	9	41	1.69
13662628--13666446	181	21.3	179	75	8	2585	40	8	9	40	1.69
13659381--13662561	360	8.8	355	75	8	1850	39	8	10	42	1.69
13666318--13666591	146	1.9	146	85	1	379	42	7	7	42	1.61
13666482--13669037	361	7.1	355	74	7	1742	40	7	9	41	1.67
13666461--13669048	181	14.5	181	75	7	1842	40	7	9	41	1.67
13667544--13667856	169	1.9	169	86	4	452	41	5	9	43	1.60
13667709--13669045	180	7.5	180	75	9	1004	40	8	9	41	1.68
13669042--13671748	181	15.1	182	75	8	1949	41	10	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13669047--13672385	541	6.3	535	76	9	2205	41	10	7	40	1.68
13669042--13672413	181	19.0	180	73	10	1922	41	10	8	40	1.68
13671792--13672363	176	3.2	177	81	6	555	43	10	7	39	1.66
13673005--13674525	181	8.5	180	75	5	1020	41	9	7	40	1.68
13673269--13674526	540	2.3	534	79	5	1222	41	10	7	39	1.68
13674579--13677237	181	14.9	178	72	8	1231	42	10	7	39	1.68
13675135--13677188	358	5.8	351	72	10	986	42	10	7	38	1.68
13676080--13676374	159	1.9	159	84	2	396	42	10	8	38	1.70
13677199--13677298	49	2.0	49	100	0	200	29	8	8	55	1.58
13677883--13678247	181	2.0	180	83	6	463	42	10	7	40	1.66
13678298--13686479	181	45.1	180	69	13	3010	41	10	8	40	1.68
13678959--13679336	177	2.1	179	81	4	424	41	10	9	38	1.71
13678640--13680290	716	2.3	719	77	7	1551	41	9	8	40	1.67
13680390--13680440	23	2.2	23	89	0	75	33	13	7	45	1.73
13680413--13682708	180	12.8	179	75	8	1757	41	10	7	39	1.69
13680413--13682702	361	6.4	358	76	9	1737	41	10	7	39	1.69
13682175--13682226	18	2.9	18	72	13	54	40	11	5	42	1.65
13683129--13684065	179	5.3	175	76	9	455	41	9	7	40	1.67
13683732--13684120	175	2.2	175	80	5	417	40	11	7	40	1.70
13682725--13687548	361	13.6	358	72	10	2308	41	9	8	39	1.68
13683287--13689852	885	7.4	880	72	12	2733	41	10	7	40	1.68
13686482--13687548	182	5.9	182	76	7	913	43	10	8	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13686507--13687548	359	2.9	355	79	6	988	43	10	8	37	1.69
13687799--13689854	363	5.7	359	74	8	990	41	9	7	41	1.66
13687799--13689852	181	11.4	180	74	6	1449	41	9	7	41	1.66
13688652--13689852	544	2.2	539	79	5	1235	40	9	8	41	1.68
13689599--13690117	265	2.0	267	80	3	591	42	6	9	40	1.64
13689865--13690930	178	5.9	177	82	4	894	42	8	8	40	1.65
13694366--13694433	21	3.3	21	70	22	63	29	1	8	60	1.36
13698830--13698874	21	2.1	22	91	4	74	64	4	8	22	1.40
13698828--13698879	21	2.9	16	70	24	50	61	5	11	21	1.50
13698987--13699320	182	1.9	177	83	5	429	42	5	9	42	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117