genome.fa.s101.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  36  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6217640--6217834	97	2.0	97	84	2	257	29	26	16	27	1.97
6223109--6223180	31	2.4	31	83	9	85	20	5	9	63	1.44
6231164--6231206	18	2.4	19	84	11	63	44	4	0	51	1.22
6231164--6231206	22	2.0	22	90	0	68	44	4	0	51	1.22
6231442--6231471	16	1.9	15	93	6	51	46	0	0	53	1.00
6235666--6235694	9	3.3	9	95	4	51	55	0	0	44	0.99
6245322--6245360	20	1.9	21	85	15	55	38	2	25	33	1.70
6249468--6249634	91	1.8	91	82	5	212	29	16	14	39	1.88
6250085--6250147	33	2.0	31	81	9	74	69	3	6	20	1.24
6251785--6251826	18	2.3	18	80	8	50	52	7	4	35	1.50
6251920--6251983	29	2.2	29	80	0	74	53	10	7	28	1.64
6261015--6261082	31	2.2	31	82	12	77	38	0	11	50	1.39
6269415--6269469	21	2.7	19	81	15	65	61	0	0	38	0.96
6273562--6273616	25	2.2	24	78	15	58	65	0	0	34	0.93
6279232--6279276	17	2.6	18	79	13	58	46	2	4	46	1.35
6280808--6280846	18	2.2	18	86	4	53	43	2	2	51	1.29
6281604--6281637	2	18.0	2	88	11	54	47	0	0	52	1.00
6297538--6297573	18	1.9	19	88	5	56	75	2	0	22	0.94
6297605--6297651	20	2.4	21	79	13	64	53	0	0	46	1.00
6299244--6299291	24	2.0	24	88	8	71	60	4	4	31	1.35
6306271--6306304	15	2.2	16	89	5	52	38	0	0	61	0.96
6307183--6307215	11	3.0	11	90	0	57	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6310153--6310271	59	2.0	59	96	0	220	32	18	15	33	1.92
6317690--6317750	31	2.0	31	96	0	113	42	8	3	45	1.50
6317764--6317809	19	2.4	21	79	17	55	41	0	6	52	1.27
6317830--6317875	20	2.2	21	84	3	58	28	17	2	52	1.56
6320302--6320347	21	2.1	22	84	4	58	58	2	0	39	1.10
6321328--6321400	29	2.5	28	73	8	74	36	1	0	61	1.05
6321352--6321395	16	3.1	14	78	18	54	29	0	0	70	0.88
6321327--6321404	18	4.4	18	70	15	56	38	1	0	60	1.05
6325456--6325497	14	3.1	14	86	6	52	33	0	0	66	0.92
6325472--6325506	14	2.4	14	95	4	61	37	2	0	60	1.12
6327884--6327927	20	2.3	19	92	4	70	63	0	0	36	0.95
6327884--6327976	19	4.7	20	73	15	77	60	3	0	36	1.13
6327885--6327945	20	3.1	19	80	15	54	63	0	0	36	0.94
6335664--6335698	17	2.1	17	100	0	70	34	17	5	42	1.73
6339769--6339808	2	20.0	2	100	0	80	50	0	0	50	1.00
6342963--6343016	20	2.8	20	72	13	58	48	1	0	50	1.11
6344704--6344728	2	12.5	2	100	0	50	0	52	0	48	1.00
6344840--6344923	22	3.6	23	72	12	73	63	0	0	36	0.95
6344942--6345021	39	2.2	36	78	18	87	55	1	0	43	1.08
6344942--6345016	37	2.0	36	82	14	91	53	1	0	45	1.08
6351718--6351763	24	2.0	24	86	4	67	69	0	2	28	1.00
6351710--6351747	13	2.7	14	88	8	51	68	0	2	28	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6351743--6351804	24	2.5	22	85	15	70	58	0	1	40	1.08
6351743--6351800	22	2.4	25	83	13	77	58	0	1	39	1.08
6364331--6364382	22	2.2	24	86	10	72	50	7	0	42	1.31
6364331--6364386	23	2.4	24	85	11	80	50	7	0	42	1.30
6365585--6365622	10	3.8	10	82	10	51	39	0	2	57	1.12
6366179--6366231	8	6.6	8	75	16	56	50	0	3	45	1.19
6366179--6366231	17	3.3	16	76	15	56	50	0	3	45	1.19
6366880--6366925	23	2.0	23	91	0	74	26	17	13	43	1.85
6366893--6366939	23	2.0	23	84	8	60	27	14	14	42	1.86
6367467--6367499	15	2.1	16	94	5	59	72	0	0	27	0.85
6368679--6368726	25	1.9	25	91	0	78	47	2	2	47	1.25
6368741--6368782	13	3.1	13	89	6	57	28	0	0	71	0.86
6383459--6383508	13	3.9	13	70	15	50	40	8	8	44	1.63
6392512--6392558	23	2.0	23	84	8	60	46	6	4	42	1.48
6401120--6401173	20	2.5	21	82	11	65	55	3	0	40	1.17
6401329--6401373	16	2.8	16	82	0	63	57	0	0	42	0.98
6401342--6401396	26	2.1	26	82	3	65	47	0	1	50	1.11
6401357--6401414	26	2.2	26	93	0	98	41	0	3	55	1.17
6402814--6402874	24	2.6	24	80	14	65	29	0	1	68	0.99
6404860--6404953	49	1.9	49	91	0	152	30	11	18	39	1.86
6422514--6422584	20	3.2	24	66	25	75	52	0	9	38	1.35
6422509--6422594	41	2.1	41	100	0	172	54	0	9	36	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6422515--6422577	17	3.3	17	73	26	63	53	0	7	38	1.30
6432573--6432605	16	2.2	16	89	10	52	63	6	0	30	1.18
6436879--6436948	33	2.4	28	77	22	72	57	0	0	42	0.99
6438348--6438911	299	1.9	299	81	6	671	48	7	9	34	1.65
6439040--6439066	2	13.5	2	100	0	54	51	0	0	48	1.00
6439391--6439435	23	2.0	22	83	12	56	62	2	0	35	1.08
6442514--6442563	21	2.3	22	86	3	66	44	0	0	56	0.99
6443267--6443325	11	5.5	11	74	21	54	15	0	3	81	0.82
6451839--6451874	17	2.1	17	89	0	54	55	0	0	44	0.99
6451866--6451909	22	2.0	22	82	8	54	68	4	2	25	1.20
6452651--6452713	13	4.8	13	75	16	58	61	0	3	34	1.12
6452663--6452693	16	2.0	15	93	6	53	70	0	0	29	0.87
6452659--6452713	11	4.6	12	76	15	60	63	0	1	34	1.05
6452659--6452713	24	2.3	23	84	9	74	63	0	1	34	1.05
6452646--6452764	48	2.6	47	78	12	113	63	0	1	35	1.05
6452721--6452760	21	1.9	21	84	0	53	67	0	0	32	0.91
6452756--6452820	25	2.7	24	75	17	71	49	0	0	50	1.00
6452730--6452816	23	3.7	23	71	14	63	54	0	0	45	1.00
6452784--6452820	16	2.2	17	90	4	58	51	0	0	48	1.00
6454124--6454178	24	2.3	24	96	0	101	40	1	1	56	1.21
6455009--6455043	17	2.0	17	88	5	52	45	8	0	45	1.34
6472291--6472349	19	2.9	21	73	21	61	49	1	1	47	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6473971--6474022	22	2.3	23	80	12	63	59	1	0	38	1.08
6476293--6476318	11	2.4	11	100	0	52	30	0	0	69	0.89
6476314--6476338	6	4.2	6	100	0	50	48	0	0	52	1.00
6479691--6479748	11	4.9	12	77	12	50	55	0	1	43	1.10
6479721--6479769	18	2.8	17	79	11	55	61	0	2	36	1.08
6479729--6479771	19	2.3	18	88	8	59	65	0	2	32	1.06
6479761--6479796	18	2.0	18	88	0	54	38	0	0	61	0.96
6479769--6479803	18	2.0	18	88	5	54	34	0	0	65	0.93
6479822--6479863	19	2.2	20	86	4	59	50	4	0	45	1.23
6480553--6480589	2	18.5	2	88	0	56	48	2	2	45	1.30
6480544--6480589	14	3.3	14	90	0	65	47	6	2	43	1.41
6480633--6480675	14	3.1	14	86	3	61	51	0	6	41	1.29
6486135--6486194	25	2.4	24	83	10	75	56	3	8	31	1.45
6489672--6489702	1	31.0	1	100	0	62	0	0	0	100	0.00
6489999--6490030	15	2.2	15	94	5	57	46	0	12	40	1.42
6497397--6497475	31	2.5	31	85	2	95	55	13	8	21	1.65
6498732--6498775	18	2.3	20	80	11	56	38	0	0	61	0.96
6500287--6500320	14	2.4	14	86	13	52	47	0	0	52	1.00
6501968--6502004	15	2.5	15	95	0	65	24	0	2	72	0.97
6501890--6502099	105	2.0	105	83	2	264	36	6	10	46	1.64
6502201--6502255	23	2.3	25	84	9	78	54	7	1	36	1.39
6503149--6503213	13	4.8	13	71	23	53	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6509711--6509873	76	2.1	76	86	2	220	42	3	12	40	1.61
6510674--6510704	11	2.8	11	100	0	62	61	9	0	29	1.28
6510819--6510856	19	2.0	20	84	5	51	47	0	0	52	1.00
6512580--6512654	37	2.0	38	82	7	91	45	5	2	46	1.40
6513285--6513319	17	2.0	18	88	5	54	40	0	5	54	1.24
6515621--6515669	24	2.0	24	84	0	62	38	4	4	53	1.39
6515906--6515946	20	2.0	20	95	0	73	36	9	34	19	1.85
6523719--6523797	29	2.6	30	86	13	101	51	0	0	48	1.00
6523870--6523929	29	2.1	29	83	0	75	45	8	0	46	1.33
6528344--6528466	60	2.0	60	90	3	194	29	21	14	34	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117