genome.fa.s101.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  87  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15787807--15787881	39	1.9	39	89	5	116	21	0	32	46	1.51
15787907--15787961	19	2.8	20	78	8	60	14	0	43	41	1.45
15789275--15789349	11	6.9	11	70	8	64	6	20	1	72	1.15
15789274--15789349	33	2.3	34	88	4	111	7	19	1	71	1.18
15793553--15793725	73	2.4	74	83	2	213	35	11	15	38	1.83
15793566--15793717	73	2.1	73	87	0	214	36	11	15	35	1.85
15796781--15796815	13	2.8	13	95	4	63	37	0	17	45	1.48
15800020--15800080	30	2.0	30	93	0	104	44	6	11	37	1.67
15802712--15802791	31	2.6	31	80	9	92	50	2	0	47	1.14
15802710--15802791	16	5.5	15	71	12	53	48	2	0	48	1.14
15802756--15802825	25	2.8	24	78	8	77	48	1	0	50	1.09
15804270--15804321	27	1.9	27	92	7	88	50	11	3	34	1.57
15820864--15820957	49	1.9	49	89	4	145	44	9	24	21	1.82
15821798--15821883	42	2.0	43	88	2	129	31	10	13	44	1.78
15821971--15822000	2	15.0	2	100	0	60	50	0	0	50	1.00
15832541--15832589	24	2.0	24	92	0	80	26	14	22	36	1.92
15833162--15833188	12	2.2	12	100	0	54	92	0	0	7	0.38
15833528--15833566	16	2.4	16	86	0	51	61	12	5	20	1.50
15838173--15838207	10	3.3	10	88	11	52	85	2	2	8	0.79
15839759--15839899	64	2.2	65	87	1	194	44	5	8	41	1.58
15840243--15840268	13	2.0	13	100	0	52	38	0	7	53	1.30
15842380--15842477	39	2.6	38	85	6	128	61	5	2	31	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15842467--15842513	20	2.4	19	76	16	51	63	10	0	25	1.26
15842472--15842541	20	3.4	20	78	9	61	58	11	1	28	1.41
15842487--15842541	19	2.8	20	80	8	58	60	9	1	29	1.38
15842498--15842542	19	2.4	19	88	0	63	60	11	2	26	1.42
15842567--15842605	19	2.0	21	90	10	64	56	10	2	30	1.46
15842625--15842671	19	2.5	19	78	0	58	68	2	4	25	1.19
15842695--15842739	20	2.3	20	88	3	65	31	4	6	57	1.44
15845502--15845557	24	2.3	24	75	6	60	14	35	1	48	1.54
15846246--15846270	3	8.3	3	100	0	50	68	0	0	32	0.90
15850716--15850757	22	1.9	22	90	0	66	45	11	11	30	1.77
15851118--15851371	136	1.9	136	86	2	368	25	18	19	35	1.95
15855489--15855528	20	2.0	20	90	9	64	20	30	0	50	1.49
15855491--15855535	20	2.2	20	84	11	56	24	24	0	51	1.49
15855696--15855751	26	2.2	26	86	0	76	57	3	7	32	1.43
15857621--15857700	37	2.2	37	88	4	117	41	1	8	48	1.42
15857730--15857891	74	2.2	73	82	4	191	32	8	7	52	1.58
15860354--15860953	313	1.9	313	85	0	824	39	7	8	44	1.63
15862060--15862102	20	2.2	20	100	0	86	37	13	4	44	1.65
15864099--15864144	15	3.1	15	84	9	51	65	19	8	6	1.43
15866020--15866272	136	1.9	136	86	2	366	26	18	19	35	1.95
15868970--15869003	2	16.5	2	93	6	59	50	2	0	47	1.16
15870743--15870806	26	2.6	25	80	5	67	59	3	6	31	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15872668--15872742	37	2.1	37	85	7	102	40	1	9	49	1.43
15873138--15873344	74	2.8	73	76	5	229	35	9	6	48	1.62
15874605--15874682	40	2.0	40	87	5	113	35	11	7	44	1.69
15874644--15874834	74	2.6	73	77	6	181	32	12	6	48	1.66
15875757--15875791	17	2.0	18	88	5	54	48	11	8	31	1.69
15877108--15877148	20	2.0	20	95	0	73	39	14	2	43	1.59
15877139--15877163	2	12.5	2	100	0	50	48	0	0	52	1.00
15882554--15882612	28	2.1	28	80	0	64	42	5	10	42	1.60
15882869--15882958	21	4.2	21	74	5	90	37	14	15	32	1.88
15882869--15882958	44	2.1	42	83	4	108	37	14	15	32	1.88
15884089--15884116	7	4.0	7	100	0	56	42	0	0	57	0.99
15886371--15886418	12	4.1	11	81	10	51	14	6	4	75	1.16
15886372--15886418	23	2.0	23	84	15	62	14	6	4	74	1.17
15886652--15886694	20	2.1	21	83	12	54	4	13	9	72	1.26
15886954--15886992	21	1.9	20	89	5	60	69	2	0	28	1.02
15887676--15887716	19	2.1	19	86	9	55	26	2	0	70	0.99
15890300--15890328	12	2.5	12	94	5	51	48	24	0	27	1.51
15891043--15891082	20	2.0	20	85	0	53	20	25	2	52	1.59
15891603--15891673	35	2.0	35	97	0	133	21	21	14	43	1.87
15898555--15898598	22	2.0	22	95	0	79	31	11	13	43	1.80
15900124--15900167	22	2.0	22	95	0	79	31	11	13	43	1.80
15902443--15902476	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15902476--15902503	2	14.0	2	100	0	56	50	0	50	0	1.00
15907077--15907111	15	2.3	15	90	0	52	28	17	8	45	1.77
15914861--15914941	10	8.4	9	77	8	72	49	2	0	48	1.14
15914886--15914939	18	2.9	18	83	2	72	55	1	0	42	1.10
15914868--15914939	19	3.8	19	81	5	74	52	1	0	45	1.09
15915048--15915105	21	2.9	20	80	16	75	53	8	0	37	1.32
15915053--15915119	19	3.4	19	82	11	82	55	7	0	37	1.28
15915053--15915133	19	4.2	18	80	13	81	55	9	0	34	1.33
15915181--15915218	20	1.9	20	88	0	58	65	0	5	28	1.14
15915405--15915445	21	2.0	21	85	0	55	34	7	2	56	1.40
15915626--15915688	27	2.4	25	77	12	63	34	4	1	58	1.29
15915667--15915707	20	2.0	20	86	9	57	31	0	7	60	1.24
15915758--15915859	9	10.4	10	71	16	63	33	1	6	57	1.36
15915892--15915947	20	2.8	20	78	8	51	35	3	3	57	1.34
15923313--15923423	49	2.3	49	98	0	213	24	9	18	48	1.76
15923329--15923409	27	3.2	27	62	22	66	27	4	17	50	1.66
15926590--15926659	23	2.9	23	91	6	104	22	10	31	35	1.87
15928107--15928136	13	2.2	14	94	5	53	83	0	16	0	0.65
15928914--15928947	16	2.1	16	94	0	59	14	29	11	44	1.81
15929782--15929831	19	2.6	19	84	6	66	52	22	4	22	1.64
15939024--15939102	8	9.2	8	71	19	54	79	1	15	3	0.93
15939024--15939108	19	4.3	20	72	25	56	80	1	15	3	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15939015--15939105	31	3.0	32	76	19	88	76	1	17	4	1.00
15942578--15942619	20	2.1	20	100	0	84	33	21	4	40	1.74
15947462--15947622	64	2.5	64	80	4	166	41	11	11	34	1.78
15948883--15948939	13	4.8	12	72	14	55	21	0	3	75	0.95
15948894--15948945	7	7.0	7	79	12	59	19	0	3	76	0.93
15948886--15948945	15	4.1	14	76	14	59	20	0	3	76	0.92
15948882--15948945	23	2.9	22	86	9	94	20	0	3	76	0.92
15950497--15950602	51	2.1	51	89	1	160	37	9	16	35	1.82
15956391--15956426	17	2.1	17	94	0	63	44	0	13	41	1.44
15959362--15959404	21	2.2	19	83	8	50	65	9	9	16	1.47
15967469--15967724	72	3.5	71	81	3	253	46	9	11	33	1.72
15969772--15969923	56	2.8	53	74	9	121	31	11	8	48	1.69
15969905--15970095	55	3.4	55	80	10	199	31	7	7	52	1.59
15969760--15970090	55	6.0	55	67	13	178	32	9	8	49	1.65
15971547--15971589	22	2.0	22	85	0	59	34	16	16	32	1.91
15971818--15971871	22	2.5	22	81	0	63	33	11	20	35	1.88
15972222--15972279	22	2.5	22	81	13	55	43	0	17	39	1.49
15986117--15986480	182	2.0	180	92	1	602	49	14	8	27	1.72
15987281--15987418	43	3.2	43	86	5	163	44	19	10	25	1.83
15987628--15987652	13	1.9	13	100	0	50	48	8	28	16	1.74
15993024--15993064	21	2.0	21	100	0	82	60	9	9	19	1.55
15994050--15994091	23	1.9	21	85	9	57	59	11	0	28	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15994067--15994114	16	2.9	16	75	9	51	52	16	0	31	1.45
15994381--15994442	24	2.6	24	87	7	90	53	11	3	32	1.53
15994385--15994457	19	3.3	23	76	18	73	53	10	4	31	1.55
15994538--15994588	21	2.5	20	81	12	59	50	11	7	29	1.67
15994540--15994754	55	3.9	55	83	2	263	55	10	5	28	1.56
15994527--15994757	111	2.1	108	85	2	300	54	9	6	29	1.60
15994610--15994888	132	2.1	132	84	2	353	54	10	6	29	1.59
15994678--15994830	77	2.0	78	85	1	209	57	11	4	26	1.52
15994740--15994915	54	3.2	55	87	4	250	52	11	5	29	1.61
15994787--15994830	23	2.0	22	86	4	61	56	11	4	27	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117