genome.fa.s101.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  27  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3695317--3695890	217	2.6	216	80	7	526	56	7	9	25	1.57
3696682--3696807	67	1.9	67	88	1	189	62	9	3	24	1.40
3700128--3700420	144	2.0	144	98	0	568	39	12	15	32	1.85
3702980--3703020	21	1.9	22	90	5	66	46	9	21	21	1.80
3706965--3707009	21	2.2	21	96	4	83	51	0	0	48	1.00
3717041--3717076	17	2.1	17	89	0	54	22	16	8	52	1.70
3719188--3719258	31	2.3	30	81	11	81	52	0	0	47	1.00
3720991--3721029	21	1.9	21	84	5	53	48	0	2	48	1.15
3721020--3721055	16	2.2	17	90	5	56	41	5	5	47	1.50
3733707--3733751	2	22.5	2	100	0	90	51	0	0	48	1.00
3734228--3734276	22	2.2	23	82	13	59	51	0	0	48	1.00
3737493--3737542	22	2.2	23	96	3	93	52	0	0	48	1.00
3737492--3737548	22	2.6	22	82	17	75	52	0	0	47	1.00
3739666--3739709	22	2.0	21	86	4	61	40	9	13	36	1.76
3746611--3746636	2	13.0	2	100	0	52	50	0	0	50	1.00
3750361--3750403	21	2.0	21	100	0	86	25	18	9	46	1.79
3754106--3754181	29	2.7	29	88	6	104	50	1	0	48	1.09
3754141--3754179	17	2.1	17	86	13	51	48	2	0	48	1.15
3755847--3755905	27	2.2	27	78	3	66	59	0	6	33	1.24
3757294--3757347	18	3.1	17	74	10	54	53	0	0	46	1.00
3757400--3757434	16	2.1	17	89	10	54	22	0	5	71	1.07
3762054--3762097	19	2.2	20	88	4	63	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3763127--3763178	22	2.5	22	87	6	72	51	0	1	46	1.12
3763126--3763178	20	2.6	21	82	11	65	52	0	1	45	1.11
3763163--3763212	14	3.4	14	73	10	55	56	0	0	44	0.99
3763166--3763240	16	4.7	16	73	15	66	58	1	0	40	1.06
3763151--3763232	30	2.7	30	94	0	137	54	1	0	43	1.07
3763145--3763248	30	3.5	30	85	2	120	57	0	0	41	1.05
3763723--3763777	18	3.1	17	78	19	58	54	3	0	41	1.18
3765123--3765174	19	2.8	18	80	11	61	61	1	1	34	1.18
3765496--3765543	18	2.6	17	81	12	51	58	2	0	39	1.10
3766250--3766281	7	4.6	7	92	0	55	43	25	12	18	1.85
3766777--3766830	18	3.1	17	74	10	54	53	0	0	46	1.00
3766883--3766917	16	2.1	17	89	10	54	22	0	5	71	1.07
3770944--3770975	7	4.6	7	92	0	55	43	25	12	18	1.85
3774210--3774246	16	2.3	16	90	0	56	40	2	2	54	1.29
3774716--3774759	16	2.7	16	80	16	54	50	0	0	50	1.00
3780215--3780257	22	2.0	22	86	9	61	25	2	6	65	1.30
3781174--3781230	4	13.2	4	81	10	51	19	1	7	71	1.17
3781174--3781230	17	3.3	17	76	11	62	19	1	7	71	1.17
3781164--3781225	30	2.0	31	87	9	92	17	1	8	72	1.17
3787654--3787684	14	2.2	14	94	0	53	58	0	3	38	1.15
3793674--3793713	21	1.9	21	84	0	53	52	0	0	47	1.00
3794350--3794406	12	4.8	12	75	18	57	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3794371--3794428	22	2.7	23	81	7	68	48	0	0	51	1.00
3795542--3795577	12	3.0	12	92	8	56	66	0	0	33	0.92
3796329--3796367	21	1.9	21	89	5	62	48	2	0	48	1.15
3803046--3803108	22	2.7	22	76	9	63	44	0	0	55	0.99
3803046--3803112	23	2.9	23	76	10	73	43	0	0	56	0.99
3804153--3804193	17	2.4	18	80	8	50	36	2	2	58	1.24
3804266--3804299	16	2.2	16	94	5	61	35	0	0	64	0.94
3806301--3806359	28	2.1	28	81	12	68	49	0	0	50	1.00
3806734--3806773	16	2.5	16	87	0	53	47	2	0	50	1.14
3807145--3807216	36	2.0	36	84	10	94	61	0	1	37	1.05
3807261--3807315	23	2.3	23	84	12	76	47	1	0	50	1.11
3812224--3812252	2	14.5	2	100	0	58	48	0	0	51	1.00
3822931--3822963	3	11.0	3	100	0	66	33	0	0	66	0.92
3827207--3827284	33	2.4	33	86	0	111	26	17	12	42	1.86
3830420--3830462	17	2.4	18	84	7	52	55	0	2	41	1.12
3830403--3830462	18	3.5	17	78	12	61	56	0	1	41	1.09
3830546--3830631	19	4.5	19	73	22	63	58	6	5	29	1.48
3830534--3830579	23	2.0	22	84	12	58	58	4	6	30	1.43
3830550--3830648	29	3.3	29	73	10	85	59	5	5	30	1.40
3831374--3831418	23	2.0	23	91	8	74	48	0	2	48	1.13
3834146--3834700	159	3.5	157	76	8	459	40	10	14	34	1.81
3834260--3834712	158	2.8	156	76	10	420	41	10	14	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3850940--3850972	16	2.1	16	94	0	57	33	18	15	33	1.92
3851625--3851653	14	2.0	15	93	6	51	55	0	0	44	0.99
3855943--3855991	22	2.3	22	79	10	57	59	2	0	38	1.09
3857301--3857344	18	2.4	18	85	11	54	61	6	0	31	1.22
3857326--3857364	14	2.7	15	88	11	55	48	5	0	46	1.24
3858344--3858373	9	3.2	9	95	4	51	63	0	0	36	0.95
3858346--3858375	10	3.1	10	95	4	53	63	0	0	36	0.95
3858482--3858535	22	2.5	22	90	0	81	25	11	22	40	1.87
3858676--3858735	14	4.3	14	76	6	50	26	0	10	63	1.26
3862134--3862159	1	26.0	1	100	0	52	0	0	0	100	0.00
3864073--3864165	45	2.0	46	83	6	116	51	8	5	34	1.55
3864679--3864900	109	2.0	109	85	1	293	29	7	11	51	1.65
3866186--3866251	32	2.1	31	82	2	78	46	1	0	51	1.10
3868768--3870311	771	2.0	772	96	1	2880	33	16	15	34	1.90
3871986--3875032	760	4.0	760	97	0	5760	36	16	16	30	1.91
3878358--3878619	60	4.4	58	79	8	260	48	8	11	32	1.68
3878393--3878619	118	1.9	119	86	4	325	48	8	10	32	1.67
3879071--3879104	10	3.3	10	84	8	50	11	0	2	85	0.71
3879071--3879126	28	2.1	25	83	9	67	16	0	5	78	0.92
3881178--3881363	92	2.0	92	97	0	354	29	11	11	47	1.75
3881621--3881676	27	2.1	27	86	3	78	28	14	17	39	1.89
3886595--3886654	31	1.9	32	96	3	113	48	8	13	30	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3888851--3888886	19	2.0	17	89	10	54	25	0	22	52	1.47
3891029--3891087	25	2.4	25	86	5	86	74	3	1	20	1.05
3891870--3891911	6	6.8	6	94	5	75	83	0	2	14	0.75
3891880--3892027	3	51.7	3	71	14	80	66	4	2	26	1.22
3891934--3892033	14	7.1	13	76	19	53	63	2	2	33	1.17
3891933--3892021	30	2.8	32	77	16	105	60	2	3	33	1.25
3892209--3892668	55	8.4	53	72	11	200	41	14	20	23	1.89
3892326--3892625	110	2.7	110	77	7	304	41	15	20	22	1.89
3892534--3892684	56	2.7	55	76	6	153	45	13	17	23	1.84
3897615--3897673	27	2.1	28	84	6	75	62	1	5	30	1.26
3897583--3897697	59	2.0	57	81	6	133	64	1	3	30	1.20
3898548--3898674	3	46.7	3	67	21	75	59	3	3	33	1.29
3898549--3898677	5	25.2	5	70	22	74	59	3	3	34	1.28
3898548--3898678	8	16.6	8	70	19	80	60	3	3	33	1.28
3898549--3898650	22	4.5	22	83	13	120	59	3	1	34	1.27
3900011--3900045	15	2.3	15	90	5	52	51	0	0	48	1.00
3900011--3900108	16	6.0	16	71	13	58	50	1	2	46	1.19
3900129--3900275	13	10.0	15	71	22	109	43	0	1	54	1.13
3900112--3900206	8	12.5	8	74	13	69	44	0	1	54	1.07
3900129--3900281	18	9.2	17	71	21	96	43	0	1	54	1.13
3900098--3900281	36	5.2	36	72	15	109	41	1	1	56	1.13
3900808--3901505	350	2.0	351	90	1	1087	37	16	11	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3902684--3903279	152	3.9	152	97	0	1068	37	17	14	30	1.90
3903738--3903781	20	2.2	20	95	0	79	4	25	31	38	1.76
3903667--3903783	61	1.9	63	80	7	141	17	20	29	32	1.95
3903745--3903789	20	2.2	20	84	0	54	11	22	33	33	1.89
3904365--3904393	3	9.7	3	100	0	58	68	0	0	31	0.89
3904550--3904614	20	3.2	20	91	0	94	20	30	32	16	1.95
3906124--3906247	38	3.1	40	65	17	103	38	12	10	37	1.78
3906124--3906283	80	2.0	80	96	0	293	40	11	8	39	1.73
3908141--3908181	18	2.3	18	91	0	64	43	0	39	17	1.49
3914471--3914499	10	2.9	10	100	0	58	17	20	10	51	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117