genome.fa.s101.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  64  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11809817--11809847	2	16.0	2	93	6	55	48	0	0	51	1.00
11810042--11810087	24	1.9	24	82	8	58	52	6	2	39	1.40
11814288--11814312	9	2.8	9	100	0	50	80	0	0	20	0.72
11817650--11817679	15	1.9	16	93	6	53	40	13	23	23	1.90
11821886--11821937	24	2.1	25	85	7	70	38	0	3	57	1.17
11821910--11821973	16	4.2	16	78	11	64	48	0	0	51	1.00
11825115--11825173	23	2.4	25	77	8	68	54	1	3	40	1.27
11827402--11827441	2	20.0	2	89	0	62	45	0	2	52	1.14
11833032--11833086	19	2.8	20	72	22	53	14	10	1	72	1.19
11833175--11833229	15	3.6	15	78	9	58	74	5	1	18	1.10
11833175--11833235	5	12.0	5	76	10	52	75	4	1	18	1.06
11833562--11833589	12	2.3	12	100	0	56	46	17	7	28	1.75
11834050--11834092	14	2.9	14	86	10	59	72	2	16	9	1.21
11834129--11834186	3	19.7	3	89	3	91	63	0	3	32	1.11
11834204--11834270	26	2.6	26	76	9	73	29	28	23	17	1.97
11834256--11834290	16	2.2	16	89	0	52	31	34	20	14	1.92
11835356--11835512	19	8.1	20	72	6	101	19	5	27	47	1.70
11835372--11835475	20	5.3	20	75	3	95	16	5	29	48	1.69
11835483--11835529	19	2.5	19	82	0	58	21	0	29	48	1.50
11835539--11835609	7	10.6	7	74	8	58	16	0	35	47	1.47
11837029--11837294	134	2.0	135	81	3	313	42	12	12	32	1.81
11837229--11837518	142	2.0	141	80	5	316	42	14	9	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11838686--11838711	12	2.2	12	100	0	52	23	23	7	46	1.78
11840540--11840597	31	1.9	31	96	3	109	44	31	1	22	1.63
11847506--11847574	29	2.4	30	85	4	88	63	8	1	26	1.31
11849514--11849566	10	5.6	9	74	12	52	56	3	0	39	1.17
11849715--11849759	15	3.0	15	76	0	54	66	0	0	33	0.92
11849680--11849759	30	2.6	30	78	7	81	62	3	2	31	1.26
11849897--11849951	17	3.3	17	78	16	62	29	5	0	65	1.15
11849991--11850032	18	2.3	18	87	0	57	33	0	4	61	1.17
11853955--11854189	39	6.1	37	76	16	167	23	14	17	45	1.85
11853960--11854167	77	2.7	78	79	12	214	23	12	16	46	1.82
11853958--11854185	116	2.0	116	84	6	302	22	14	16	46	1.83
11854203--11854232	12	2.4	12	94	5	51	83	16	0	0	0.65
11855537--11855597	18	3.5	17	78	12	54	18	0	11	70	1.16
11857107--11857290	95	1.9	96	93	3	318	53	16	8	21	1.69
11859235--11859335	27	3.6	28	77	9	100	62	2	2	31	1.25
11860168--11860255	16	5.7	16	74	12	76	15	3	29	51	1.60
11862803--11862904	35	3.0	34	78	9	109	47	9	21	21	1.79
11863146--11863263	35	3.4	35	75	12	125	50	12	19	16	1.77
11863146--11863397	140	1.8	140	80	3	310	50	13	18	17	1.78
11863160--11863397	70	3.4	68	74	6	201	49	13	19	17	1.79
11863668--11863793	35	3.6	34	83	1	135	48	13	19	19	1.81
11863935--11864035	35	2.9	35	79	5	105	49	11	19	18	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11864111--11864199	35	2.5	34	75	10	81	55	11	16	16	1.69
11864145--11864475	35	9.4	35	68	11	122	50	12	19	17	1.77
11864348--11864489	70	2.0	71	87	4	207	43	14	24	17	1.86
11864139--11864579	211	2.1	209	79	2	472	48	12	20	18	1.79
11864608--11864685	35	2.2	34	81	4	84	51	6	19	23	1.69
11865862--11865899	20	2.0	20	89	5	60	0	13	7	78	0.94
11866302--11866341	19	2.0	20	85	4	55	30	27	15	27	1.96
11867560--11867587	2	14.0	2	100	0	56	0	50	0	50	1.00
11867930--11868015	12	7.2	12	72	13	54	6	15	4	73	1.21
11870037--11870071	17	2.1	17	94	0	61	37	2	31	28	1.72
11873538--11873575	20	1.9	20	89	10	60	81	2	2	13	0.90
11873553--11873585	14	2.3	15	89	5	50	78	6	0	15	0.93
11873536--11873586	5	10.4	5	77	12	52	76	3	1	17	1.03
11873743--11873809	30	2.3	28	85	10	82	16	16	1	65	1.34
11873849--11873909	25	2.6	23	74	18	63	14	14	3	67	1.36
11873850--11873902	25	2.2	24	86	3	70	15	11	3	69	1.31
11873983--11874041	6	10.0	6	71	10	50	0	25	0	74	0.82
11873982--11874026	23	2.0	23	86	8	65	0	22	0	77	0.76
11873972--11874041	29	2.3	29	85	9	88	0	24	0	75	0.80
11873972--11874040	13	5.2	12	75	25	52	0	23	0	76	0.78
11873972--11874040	32	2.1	33	84	7	88	0	23	0	76	0.78
11883497--11883543	12	4.1	11	79	15	51	10	2	2	85	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11883499--11883543	13	3.4	13	78	6	54	11	2	2	84	0.80
11883497--11883536	18	2.3	18	87	12	57	10	0	2	87	0.63
11883497--11883536	17	2.4	17	87	8	55	10	0	2	87	0.63
11883937--11883979	15	2.9	15	82	0	50	69	2	18	9	1.26
11891786--11891811	2	13.0	2	100	0	52	50	0	0	50	1.00
11892148--11892198	22	2.3	23	83	9	63	50	3	1	43	1.31
11893156--11893197	17	2.4	18	84	8	59	66	2	0	30	1.04
11895441--11895509	32	2.2	32	91	0	111	34	10	2	52	1.50
11900593--11900668	36	2.2	35	83	4	91	34	2	22	40	1.68
11903974--11904146	61	2.8	62	75	7	174	38	6	12	42	1.68
11905452--11905502	22	2.3	23	83	9	63	52	3	0	43	1.19
11913846--11913921	36	2.2	35	83	4	91	34	2	22	40	1.68
11915778--11915831	25	2.1	25	83	10	65	75	5	14	3	1.12
11916103--11916176	29	2.7	28	75	22	84	51	0	2	45	1.15
11916166--11916233	24	2.8	25	82	10	79	57	1	1	39	1.17
11916527--11916578	25	2.2	25	86	13	74	80	1	5	11	0.96
11916526--11916578	23	2.2	23	86	10	70	81	1	5	11	0.94
11916732--11916765	9	3.7	9	84	7	50	58	0	0	41	0.98
11916907--11916944	2	19.0	2	100	0	76	50	0	0	50	1.00
11918053--11918092	3	13.3	3	94	0	71	30	2	0	67	1.04
11927567--11927638	29	2.5	28	77	2	72	36	1	4	58	1.26
11928106--11928136	15	2.1	15	93	0	53	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11933476--11933532	30	1.9	30	85	0	78	45	0	1	52	1.11
11933505--11933556	22	2.5	22	93	6	90	50	0	0	50	1.00
11933749--11933794	24	1.9	24	90	0	74	10	13	34	41	1.79
11943332--11943508	84	2.1	84	84	2	221	27	15	19	37	1.92
11943335--11943534	84	2.4	84	79	5	190	29	15	19	36	1.92
11943877--11943926	25	2.0	25	96	0	91	30	8	14	48	1.72
11943841--11943972	71	1.9	71	91	3	221	30	7	17	44	1.76
11943897--11944091	46	4.2	45	80	7	214	34	10	15	39	1.81
11943902--11944091	91	2.1	91	83	8	235	34	10	15	40	1.81
11945955--11946037	21	4.0	21	76	9	98	59	0	1	39	1.05
11945953--11946039	41	2.2	39	87	4	120	58	0	1	40	1.05
11946085--11946206	13	9.5	13	70	18	94	57	0	0	40	1.10
11945994--11946140	58	2.6	56	71	14	133	54	2	1	42	1.20
11946152--11946204	16	3.4	16	76	21	58	54	1	0	43	1.11
11946116--11946204	31	3.2	30	76	22	88	57	1	0	41	1.06
11945953--11946208	18	13.8	18	70	18	143	55	1	1	41	1.17
11946187--11946244	24	2.4	23	75	25	66	50	0	5	44	1.24
11956338--11956405	35	1.9	35	93	0	118	35	16	19	29	1.93
11961363--11961471	39	2.8	37	77	14	103	20	6	31	42	1.77
11961362--11961480	20	6.1	20	73	9	84	20	5	31	42	1.76
11961525--11961585	20	3.2	20	68	13	56	14	3	32	49	1.60
11961634--11961672	13	3.1	14	75	24	50	15	0	35	48	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11962643--11963061	144	2.9	145	79	4	350	41	13	12	32	1.82
11966006--11966045	20	2.0	20	90	0	62	20	5	27	47	1.70
11966154--11966199	19	2.4	19	82	17	60	21	0	32	45	1.52
11966141--11966258	63	1.9	63	86	8	170	16	0	34	47	1.53
11966731--11966850	61	2.0	61	98	0	231	48	15	14	21	1.81
11997465--11997506	16	2.5	17	88	11	68	9	14	0	76	1.02
11997714--11997746	17	1.9	17	88	11	50	6	21	0	72	1.05
11998384--11998428	20	2.1	22	84	8	58	46	4	0	48	1.22
12000747--12000780	12	2.8	12	90	4	50	5	0	26	67	1.13
12000755--12000828	30	2.5	30	80	12	89	12	0	22	64	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117