genome.fa.s101.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  54  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10068403--10068518	6	19.5	6	70	15	62	55	0	0	43	1.05
10068425--10068516	30	3.1	30	87	3	132	56	0	1	42	1.06
10071780--10071995	113	1.9	114	95	1	389	23	20	16	39	1.91
10071957--10072030	38	1.9	38	94	0	130	25	21	16	36	1.94
10072316--10072341	2	13.0	2	100	0	52	50	0	0	50	1.00
10073827--10073865	19	2.0	20	85	5	53	41	2	10	46	1.51
10074361--10075245	163	5.4	161	78	6	730	36	13	12	37	1.83
10074361--10075245	162	5.4	160	77	6	620	36	13	12	37	1.83
10074443--10075248	164	4.9	162	78	6	684	35	13	12	37	1.83
10075388--10076141	162	4.6	160	75	11	538	33	12	14	38	1.85
10075853--10075902	21	2.4	21	96	3	93	34	0	22	44	1.53
10075692--10076062	180	2.0	182	84	2	487	33	11	16	38	1.84
10076006--10076275	134	2.0	134	82	5	321	34	10	14	40	1.81
10076142--10076760	162	3.8	162	82	3	730	33	12	15	38	1.85
10076142--10076760	323	1.9	322	84	2	812	33	12	15	38	1.85
10076761--10077372	161	3.8	161	81	7	703	34	12	14	38	1.84
10076761--10077372	320	1.9	317	84	4	811	34	12	14	38	1.84
10077237--10077506	134	2.0	135	87	2	391	34	11	14	39	1.82
10077373--10077990	161	3.8	161	80	5	685	34	13	14	38	1.85
10077854--10078111	135	1.9	136	82	4	324	36	10	13	39	1.80
10078096--10078246	76	2.0	76	94	0	266	26	21	13	38	1.90
10078171--10078686	162	3.2	160	82	4	599	33	13	14	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10078551--10078820	134	2.0	135	86	2	373	36	11	13	38	1.81
10078391--10079544	296	3.8	294	79	8	1256	35	12	13	38	1.83
10078687--10079303	162	3.8	161	80	4	724	34	13	14	38	1.84
10079168--10079437	134	2.0	135	86	5	377	35	11	13	39	1.80
10075535--10079730	617	6.6	618	86	6	5503	34	12	14	38	1.84
10078848--10079731	455	1.9	458	81	2	1062	35	11	13	39	1.81
10079303--10079756	162	2.8	162	80	3	468	36	10	12	40	1.78
10086184--10086291	34	3.2	34	74	2	110	41	7	14	36	1.74
10087868--10088445	161	3.7	153	78	11	507	35	12	15	37	1.85
10088373--10088562	93	2.1	92	85	3	256	35	13	13	37	1.83
10088730--10089046	163	1.9	163	82	2	395	36	10	13	40	1.78
10088928--10089181	138	1.8	139	80	2	305	35	14	11	38	1.83
10091266--10091296	2	15.5	2	100	0	62	48	0	0	51	1.00
10094352--10094406	17	3.4	16	74	20	60	49	3	5	41	1.43
10094482--10094530	19	2.6	19	90	0	80	46	6	10	36	1.63
10094623--10094688	33	2.0	33	82	5	80	51	0	0	48	1.00
10095070--10095127	17	3.3	17	73	7	53	46	1	1	50	1.22
10100998--10101042	18	2.4	18	85	3	54	48	0	0	51	1.00
10104948--10104997	25	2.0	25	100	0	100	24	16	20	40	1.91
10108042--10108082	20	2.0	20	100	0	82	14	14	34	36	1.87
10116883--10116937	29	1.9	28	85	3	74	41	5	0	52	1.24
10118507--10118587	40	2.0	40	97	0	153	27	18	2	51	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10118837--10118872	18	2.1	17	89	5	54	50	8	0	41	1.33
10118905--10118941	16	2.4	16	90	4	58	56	0	0	43	0.99
10124435--10124505	23	3.0	23	76	11	70	28	7	14	50	1.68
10124435--10124505	26	3.0	25	80	11	78	28	7	14	50	1.68
10128679--10128753	33	2.3	33	83	6	107	29	6	13	50	1.66
10135385--10135428	22	2.0	22	95	0	79	43	13	11	31	1.80
10138150--10138197	20	2.4	20	96	0	87	47	18	8	25	1.76
10138882--10138917	18	2.0	18	88	0	54	36	25	13	25	1.93
10139283--10139326	22	2.0	22	95	0	79	43	13	11	31	1.80
10152493--10152556	30	2.1	30	97	0	119	18	18	25	37	1.94
10152527--10153301	372	2.1	369	84	4	1006	18	30	23	27	1.98
10155199--10155243	16	2.7	17	82	3	65	64	0	0	35	0.94
10155404--10155439	17	2.2	16	90	5	54	69	0	0	30	0.89
10157179--10157229	24	2.1	24	81	0	57	25	1	58	13	1.46
10157216--10157244	6	4.8	6	100	0	58	13	0	68	17	1.20
10157185--10157235	24	2.1	24	85	0	66	19	1	62	15	1.41
10157250--10157296	24	2.0	24	91	0	76	14	8	38	38	1.77
10157263--10157316	12	4.5	12	75	9	56	14	12	37	35	1.85
10157263--10157316	24	2.2	24	83	6	65	14	12	37	35	1.85
10157326--10157375	24	2.1	24	84	0	64	8	6	66	20	1.40
10157441--10157493	3	17.7	3	80	0	52	9	1	66	22	1.31
10157441--10157493	18	2.9	18	85	0	79	9	1	66	22	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10157540--10157575	18	2.0	18	100	0	72	16	5	44	33	1.71
10157579--10157635	9	6.3	9	81	0	69	15	1	66	15	1.33
10158090--10158119	15	1.9	16	93	6	53	66	0	6	26	1.16
10158804--10158846	19	2.2	19	84	16	52	62	0	2	34	1.08
10158887--10158916	15	2.0	15	93	0	51	50	0	0	50	1.00
10161850--10162170	177	1.8	172	82	4	410	37	13	19	29	1.90
10169819--10170033	113	1.9	113	86	4	308	32	9	12	45	1.75
10171383--10171458	39	2.0	39	92	2	127	32	7	3	55	1.47
10171707--10171751	18	2.6	18	83	16	51	68	4	0	26	1.08
10171740--10171809	31	2.3	31	82	9	81	70	2	4	22	1.19
10172503--10172566	21	3.1	21	66	20	53	45	1	3	50	1.27
10177804--10177854	25	2.0	26	88	11	79	39	0	1	58	1.09
10179747--10179806	31	2.0	31	86	3	86	33	18	8	40	1.80
10186664--10186711	12	3.9	13	81	10	57	72	8	0	18	1.08
10186663--10186725	24	2.7	22	81	11	72	74	9	0	15	1.06
10186663--10186726	11	5.5	11	78	14	58	73	9	0	17	1.08
10187815--10187873	23	2.4	26	80	8	70	69	3	10	16	1.30
10187858--10187899	13	3.5	13	81	15	54	64	0	7	28	1.20
10189362--10189424	23	2.7	23	74	16	67	74	0	12	12	1.07
10196562--10196806	59	4.0	60	74	12	203	35	6	4	52	1.49
10196642--10196686	15	2.9	16	80	9	58	37	4	2	55	1.32
10197365--10197408	20	2.1	21	88	12	65	63	11	0	25	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10198011--10198101	44	2.1	44	85	4	121	38	20	16	24	1.93
10206301--10206337	15	2.5	15	86	0	56	51	5	21	21	1.68
10209582--10209740	67	2.4	65	81	13	161	35	6	5	52	1.50
10214248--10214277	14	2.1	15	93	6	53	0	20	0	80	0.72
10216623--10216648	10	2.6	10	100	0	52	84	0	7	7	0.77
10217690--10217720	14	2.3	13	94	5	53	80	3	0	16	0.83
10217529--10217899	199	1.9	200	80	8	443	46	8	9	36	1.66
10221846--10221878	14	2.4	14	90	10	50	87	0	9	3	0.63
10222242--10222307	8	7.9	8	79	14	71	83	0	6	10	0.81
10222242--10222311	18	4.1	18	87	10	94	82	0	7	10	0.83
10222241--10222300	25	2.5	25	87	12	90	83	0	6	10	0.81
10223588--10223691	22	4.9	22	75	4	97	33	9	14	42	1.78
10223732--10223889	44	3.5	44	68	17	124	36	10	17	36	1.83
10224148--10224208	31	2.0	31	84	12	81	37	9	16	36	1.82
10224257--10224286	15	2.0	15	93	0	51	26	13	16	43	1.85
10224369--10224622	43	5.9	43	80	7	268	25	10	19	45	1.81
10224369--10224599	87	2.7	86	81	6	272	25	9	18	46	1.79
10225146--10225214	31	2.2	31	89	0	102	18	7	21	52	1.70
10225674--10225719	22	2.0	23	87	4	67	17	2	6	73	1.14
10228191--10228220	2	15.0	2	92	0	51	46	0	0	53	1.00
10228975--10229000	4	6.5	4	100	0	52	50	0	0	50	1.00
10229699--10229726	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10232328--10232366	17	2.2	18	86	4	53	41	0	17	41	1.50
10232473--10232512	17	2.4	17	87	4	55	62	10	5	22	1.46
10232712--10232898	65	2.8	66	76	0	178	48	9	10	32	1.69
10233140--10233188	23	2.1	24	88	3	73	36	20	14	28	1.92
10236764--10236821	25	2.3	25	80	17	66	56	5	6	31	1.47
10237115--10237178	26	2.5	26	80	5	69	45	25	3	26	1.68
10250039--10250098	30	2.0	30	83	6	77	38	10	3	48	1.53
10250167--10250223	18	3.2	18	78	14	73	14	1	38	45	1.55
10253195--10253228	10	3.3	10	87	4	50	32	8	2	55	1.45
10253404--10253457	12	4.4	13	77	15	53	77	3	1	16	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117