genome.fa.s101.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  105  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18388016--18388068	26	2.0	26	85	0	70	30	20	24	24	1.99
18388777--18390950	892	2.4	894	87	2	3130	25	24	25	24	2.00
18392631--18392682	27	1.9	27	100	0	104	23	23	28	25	1.99
18393524--18393576	26	2.0	26	96	0	97	26	18	26	28	1.98
18395296--18395348	26	2.0	26	96	0	97	28	20	24	26	1.99
18396190--18396242	26	2.0	26	96	0	97	26	18	26	28	1.98
18392016--18401656	903	10.8	897	87	3	13058	25	24	24	26	2.00
18397092--18397144	26	2.0	26	92	0	88	28	18	24	28	1.98
18397996--18398047	26	2.0	26	85	3	70	30	23	21	25	1.99
18399793--18399845	26	2.0	26	100	0	106	26	20	26	26	1.99
18400696--18400748	26	2.0	26	82	7	63	30	18	22	28	1.98
18401592--18401644	26	2.0	26	92	0	88	28	20	22	28	1.99
18402195--18402250	27	2.1	27	90	6	89	28	7	10	53	1.62
18402670--18402722	26	2.0	26	85	7	72	30	22	20	26	1.98
18402233--18404965	893	3.0	888	86	4	3646	25	23	25	26	2.00
18404465--18404517	26	2.0	26	92	0	88	28	18	24	28	1.98
18404199--18405711	759	2.0	760	85	3	2056	24	24	26	24	2.00
18406304--18406354	26	2.0	26	92	0	84	31	19	23	25	1.98
18407204--18407256	26	2.0	26	92	0	88	26	18	26	28	1.98
18408100--18408149	26	1.9	26	95	0	91	30	20	24	26	1.98
18408214--18409684	718	2.1	711	87	4	2066	26	24	23	25	2.00
18409829--18411299	701	2.1	697	87	4	2097	26	23	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18412830--18412882	26	2.0	26	96	0	97	30	18	26	24	1.98
18413706--18413758	26	2.0	26	88	0	79	26	22	22	28	1.99
18412098--18414518	898	2.7	879	87	3	3271	25	24	24	25	2.00
18413882--18415357	713	2.1	715	88	2	2189	25	23	24	26	2.00
18416197--18416249	26	2.0	26	100	0	106	26	20	26	26	1.99
18416801--18416850	26	1.9	26	91	0	82	30	20	24	26	1.98
18418598--18418650	26	2.0	26	88	0	79	30	22	22	24	1.99
18416773--18419491	903	3.1	885	86	4	3696	24	24	25	25	2.00
18419461--18421834	870	2.7	870	93	0	3890	25	23	24	25	2.00
18421919--18421971	26	2.0	26	96	0	97	26	16	24	32	1.97
18422023--18422387	172	2.1	171	81	2	410	22	27	32	17	1.97
18423874--18423926	26	2.0	26	88	0	79	26	22	26	24	2.00
18422194--18427497	879	6.0	888	83	6	6159	25	23	24	25	2.00
18427424--18427473	26	1.9	26	95	0	91	30	14	28	28	1.95
18429046--18429098	26	2.0	26	96	0	97	28	20	24	26	1.99
18427447--18432009	892	5.2	871	83	7	4994	25	23	25	25	2.00
18432010--18433976	874	2.3	868	86	3	2705	24	25	24	24	2.00
18433204--18434647	712	2.0	707	87	4	1988	26	23	24	26	2.00
18438072--18438124	26	2.0	26	92	0	88	24	20	26	28	1.99
18436296--18439065	906	3.1	897	85	3	3814	25	23	25	25	2.00
18439262--18439311	26	1.9	26	87	0	73	24	10	10	56	1.63
18440607--18440658	26	2.0	26	100	0	104	26	19	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18439010--18442858	902	4.3	899	84	4	4640	26	23	24	25	2.00
18442410--18442462	26	2.0	26	92	0	88	28	18	24	28	1.98
18443199--18443251	26	2.0	26	88	0	79	28	16	24	30	1.97
18442065--18443647	789	2.0	789	89	1	2438	25	25	25	23	2.00
18444977--18445029	26	2.0	26	96	0	97	28	20	24	26	1.99
18446754--18446804	26	2.0	26	96	0	93	29	17	23	29	1.97
18447652--18447703	25	2.0	26	85	10	72	25	21	28	25	1.99
18442854--18449933	908	8.0	901	84	5	8402	25	23	25	25	2.00
18448549--18448599	26	2.0	26	96	0	93	25	19	27	27	1.99
18450232--18450284	26	2.0	26	96	0	97	28	20	24	26	1.99
18451821--18451873	26	2.0	26	100	0	106	26	20	26	26	1.99
18452713--18452765	26	2.0	26	96	0	97	28	20	24	26	1.99
18453607--18453659	26	2.0	26	100	0	106	26	20	26	26	1.99
18451111--18454535	882	3.8	900	85	3	4440	25	23	24	26	2.00
18456994--18457046	26	2.0	26	100	0	106	26	20	26	26	1.99
18457899--18457951	26	2.0	26	92	0	88	26	20	24	28	1.99
18458785--18458837	26	2.0	26	92	0	88	26	18	24	30	1.98
18460561--18460613	26	2.0	26	85	7	72	32	16	22	28	1.96
18461459--18461511	26	2.0	26	92	0	88	26	20	24	28	1.99
18464099--18464151	26	2.0	26	96	0	97	26	18	26	28	1.98
18456117--18465888	903	11.0	899	86	3	11905	25	24	24	25	2.00
18464999--18465051	26	2.0	26	96	0	97	28	18	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18454488--18465888	899	12.8	897	85	3	13847	25	24	24	25	2.00
18466327--18466379	26	2.0	26	96	0	97	28	20	24	26	1.99
18467216--18467275	26	2.4	25	88	5	86	26	20	23	30	1.98
18468190--18468481	150	1.9	151	84	2	390	19	29	30	20	1.97
18469128--18469179	26	2.0	26	88	0	77	26	13	26	32	1.94
18469313--18469365	26	2.0	26	92	0	88	26	18	24	30	1.98
18469339--18470224	367	2.4	367	86	2	1177	23	26	28	20	1.99
18470975--18471027	26	2.0	26	92	0	88	26	18	24	30	1.98
18471001--18471885	366	2.4	368	85	2	1161	23	25	29	21	1.99
18472446--18472504	26	2.3	26	80	5	77	28	16	23	30	1.97
18471589--18476210	899	5.2	898	83	6	5799	25	23	25	25	2.00
18473352--18473402	26	2.0	26	88	0	75	31	17	25	25	1.97
18475109--18475158	26	1.9	26	88	8	75	28	16	28	28	1.97
18474371--18476121	887	2.0	874	86	4	2484	25	23	25	25	2.00
18475981--18476033	26	2.0	26	96	0	97	26	18	26	28	1.98
18476655--18476707	26	2.0	26	89	7	81	26	16	28	28	1.97
18476215--18478420	863	2.5	850	85	4	2804	25	24	24	25	2.00
18478396--18478475	26	3.1	26	96	0	142	30	21	23	25	1.99
18479952--18480004	26	2.0	26	92	0	88	30	18	24	26	1.98
18480850--18480902	26	2.0	26	88	0	79	30	16	26	26	1.97
18481750--18481802	26	2.0	26	100	0	106	26	20	26	26	1.99
18479613--18489024	898	10.6	893	85	5	11701	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18484381--18484433	26	2.0	26	96	0	97	26	18	26	28	1.98
18486329--18486379	26	2.0	26	96	0	93	29	21	21	27	1.99
18486123--18486461	185	1.8	185	88	2	520	24	27	28	19	1.98
18487063--18487115	26	2.0	26	92	7	90	26	16	28	28	1.97
18486050--18489024	895	3.3	904	86	4	4236	25	25	24	24	2.00
18488143--18488193	26	2.0	26	96	0	93	29	21	21	27	1.99
18487929--18488275	185	1.9	185	87	2	509	23	27	28	19	1.99
18488864--18488916	26	2.0	26	88	0	79	30	18	22	28	1.98
18491260--18491312	26	2.0	26	89	7	81	33	18	20	26	1.96
18492157--18492209	26	2.0	26	100	0	106	26	20	26	26	1.99
18490396--18494909	908	5.0	898	85	4	5533	25	24	24	25	2.00
18493048--18493122	26	2.9	26	100	0	150	26	20	28	25	1.99
18493954--18494032	26	3.0	26	87	3	106	27	16	24	31	1.96
18494860--18497137	903	2.5	902	87	2	3221	25	23	24	26	2.00
18497311--18497361	26	2.0	26	88	0	75	29	15	23	31	1.95
18503111--18510282	890	8.1	874	84	5	8470	25	24	24	25	2.00
18505616--18505668	26	2.0	26	100	0	106	26	20	26	26	1.99
18506518--18506570	26	2.0	26	100	0	106	26	20	26	26	1.99
18509152--18509204	26	2.0	26	100	0	106	26	20	26	26	1.99
18510052--18510104	26	2.0	26	96	0	97	24	20	28	26	1.99
18510011--18510528	272	1.9	272	89	1	797	22	29	27	19	1.98
18510509--18510561	26	2.0	26	92	0	88	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18511239--18511291	26	2.0	26	96	0	97	32	20	22	24	1.98
18512116--18512168	26	2.0	26	96	0	97	26	18	26	28	1.98
18513010--18513059	26	1.9	26	91	0	82	28	16	28	28	1.97
18510282--18514137	897	4.3	898	85	4	5123	25	25	24	24	2.00
18513908--18513960	26	2.0	26	96	0	97	26	20	24	28	1.99
18515079--18515131	26	2.0	26	92	0	88	28	18	24	28	1.98
18514137--18517242	900	3.5	893	84	5	3893	25	24	25	25	2.00
18516880--18517607	365	2.0	365	86	3	1029	23	25	28	22	1.99
18517985--18518037	26	2.0	26	92	0	88	30	16	22	30	1.96
18518883--18518932	26	1.9	26	95	0	91	30	16	26	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117