genome.fa.s101.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  31  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4663702--4663734	13	2.5	13	95	0	57	75	0	3	21	0.93
4664047--4664073	3	9.0	3	100	0	54	66	0	0	33	0.92
4669903--4669963	16	4.0	14	73	14	50	73	4	0	21	1.01
4670087--4670121	2	17.5	2	100	0	70	51	0	0	48	1.00
4670574--4670670	34	2.8	33	80	7	95	54	2	4	39	1.31
4670639--4670681	15	2.7	15	82	7	50	48	2	2	46	1.27
4670652--4670681	14	2.1	15	93	6	53	53	0	0	46	1.00
4673527--4673566	20	2.0	20	95	0	71	20	12	27	40	1.88
4677444--4677498	19	2.9	19	78	8	67	36	0	1	61	1.06
4677459--4677500	18	2.3	18	84	11	59	38	0	0	61	0.96
4677477--4677510	13	2.6	13	90	9	52	38	0	0	61	0.96
4677962--4678012	21	2.3	22	77	19	52	62	0	1	35	1.06
4680598--4680671	37	2.0	37	97	0	139	28	13	20	37	1.90
4685884--4685925	14	3.2	13	77	9	50	73	0	0	26	0.83
4685875--4685925	25	2.0	26	88	3	77	66	0	0	33	0.92
4685889--4685971	21	3.8	22	75	20	75	65	4	1	28	1.21
4685887--4685934	13	3.6	14	77	8	55	66	0	0	33	0.92
4693841--4693889	18	2.8	17	77	22	57	75	0	18	6	1.00
4694773--4694816	23	1.9	23	86	9	63	43	4	25	27	1.74
4695233--4695288	21	2.7	21	88	2	78	39	10	14	35	1.81
4695170--4695422	79	3.2	79	89	1	373	38	13	16	31	1.87
4695312--4695362	21	2.5	21	87	3	68	43	13	13	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4695329--4695457	59	2.2	60	91	4	208	36	11	20	31	1.88
4695329--4695478	59	2.5	59	85	6	180	36	12	20	30	1.90
4695513--4695567	21	2.6	21	91	0	83	41	9	9	40	1.68
4695790--4695940	41	3.7	40	79	5	160	25	14	17	41	1.88
4695790--4695947	82	1.9	82	85	2	219	26	14	18	39	1.90
4697562--4697735	54	3.2	53	75	13	179	51	8	13	26	1.69
4697549--4697751	113	1.8	110	90	5	327	51	7	14	25	1.69
4697562--4697759	54	3.6	52	73	14	164	49	8	14	27	1.71
4698690--4699889	181	6.7	180	74	9	856	40	9	9	40	1.69
4698764--4699381	182	3.4	179	78	7	405	41	9	8	40	1.69
4709568--4709611	23	1.9	23	81	9	54	25	6	15	52	1.68
4709733--4710299	180	3.2	172	76	9	534	40	8	9	42	1.67
4710759--4711635	181	4.9	179	76	7	766	41	6	8	43	1.62
4710758--4711635	358	2.5	359	81	7	961	41	6	8	43	1.62
4710758--4711744	358	2.8	358	80	7	919	40	6	8	43	1.61
4711563--4712007	249	1.8	239	80	8	520	41	7	9	41	1.65
4711768--4714367	181	14.5	180	76	6	1956	40	8	10	41	1.68
4711892--4714371	709	3.5	709	78	6	2296	40	8	10	41	1.69
4714841--4714869	13	2.1	14	93	6	51	17	0	0	82	0.66
4715819--4715859	19	2.3	19	87	8	59	39	19	0	41	1.52
4716143--4716189	3	15.3	3	86	4	67	68	4	0	27	1.08
4716146--4716208	12	5.2	12	81	9	74	63	7	1	26	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4716146--4716214	25	2.8	25	82	6	79	65	7	1	26	1.27
4716222--4716265	21	2.1	21	86	0	61	31	31	15	20	1.94
4716433--4716667	121	1.9	121	81	6	280	44	14	21	19	1.86
4717423--4717520	50	2.0	50	80	11	112	6	16	8	69	1.33
4717516--4717550	13	2.8	13	91	4	54	0	8	2	88	0.61
4717516--4717551	15	2.4	15	90	9	56	0	8	2	88	0.59
4720659--4720706	18	2.7	18	87	6	62	72	6	8	12	1.26
4721447--4721476	15	2.0	15	93	0	51	43	0	10	46	1.37
4721485--4721531	24	1.9	25	82	4	60	23	10	6	59	1.53
4721614--4721654	19	2.2	19	86	0	55	78	4	4	12	1.07
4722399--4722446	3	16.3	3	95	4	89	66	0	0	33	0.92
4722542--4722985	181	2.5	180	79	5	482	39	9	10	40	1.71
4723286--4723812	181	2.9	178	76	9	526	39	9	9	42	1.68
4725227--4725319	47	1.9	49	80	8	111	15	7	26	50	1.70
4725274--4725439	57	2.9	54	76	10	136	17	3	27	51	1.62
4725492--4725560	21	3.6	19	74	22	56	14	5	31	47	1.68
4725819--4725860	17	2.3	19	80	8	52	23	0	14	61	1.32
4726643--4726696	28	1.9	28	82	14	67	20	5	25	48	1.71
4726504--4727161	354	1.9	352	95	0	1199	27	8	18	45	1.78
4727089--4727232	71	2.0	73	95	2	265	35	9	8	47	1.65
4727403--4727442	16	2.3	18	83	12	57	55	0	0	45	0.99
4727403--4727446	17	2.6	16	89	7	61	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4729071--4729106	17	2.1	18	94	5	65	2	11	0	86	0.68
4729172--4729215	2	22.5	2	86	13	65	50	2	0	47	1.13
4729155--4729217	29	2.2	28	91	5	108	47	3	0	49	1.17
4729767--4729807	20	2.0	21	85	4	57	51	0	0	48	1.00
4735946--4736010	30	2.2	30	97	0	121	40	1	6	52	1.36
4736166--4736227	12	5.0	12	77	14	63	35	0	0	64	0.94
4736156--4736213	5	10.8	5	78	14	53	31	0	0	68	0.89
4737136--4737178	2	21.5	2	100	0	86	48	0	0	51	1.00
4737597--4737676	41	2.0	41	92	0	133	37	15	7	40	1.75
4739530--4739569	21	2.0	21	85	5	55	55	0	5	40	1.22
4740681--4740722	19	2.2	19	86	0	57	47	0	2	50	1.14
4744448--4744504	18	3.1	18	87	7	80	38	7	12	42	1.70
4746900--4747001	50	2.0	50	96	0	186	48	18	13	19	1.81
4757814--4757889	26	2.9	26	82	7	109	40	18	14	26	1.89
4761758--4761784	2	13.5	2	100	0	54	51	0	0	48	1.00
4764531--4764913	150	2.6	149	77	6	371	38	20	10	30	1.86
4764431--4764919	50	9.8	50	75	5	335	38	20	10	30	1.86
4764866--4764993	64	2.0	64	100	0	256	42	17	7	32	1.78
4768693--4769014	169	1.9	169	85	0	446	40	14	15	29	1.86
4769079--4769170	37	2.5	36	80	3	112	43	21	11	22	1.85
4769050--4769159	37	3.0	37	74	5	107	45	24	9	20	1.80
4770212--4770247	7	5.0	7	86	6	54	58	11	0	30	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4771966--4771999	17	2.0	17	94	0	59	61	5	5	26	1.42
4772518--4772554	18	2.1	18	89	0	56	54	5	5	35	1.47
4773526--4773572	7	6.7	7	90	0	76	25	14	29	29	1.95
4778164--4778216	12	4.3	13	71	22	51	50	0	9	39	1.35
4779623--4779667	23	2.0	23	82	8	56	75	11	8	4	1.17
4779710--4779772	32	2.0	32	85	11	87	58	0	0	41	0.98
4779852--4779914	26	2.4	27	81	2	74	46	0	4	49	1.23
4780599--4780647	22	2.1	22	85	7	62	48	0	0	51	1.00
4780904--4780933	16	1.9	16	93	6	53	86	0	6	6	0.70
4781014--4781048	17	2.1	17	88	0	52	65	0	14	20	1.26
4782897--4782940	22	2.0	22	86	4	63	47	4	0	47	1.22
4792721--4792747	8	3.4	8	100	0	54	11	25	40	22	1.87
4794022--4794070	2	24.5	2	100	0	98	0	48	0	51	1.00
4797644--4797700	10	6.1	10	68	15	50	47	1	0	50	1.11
4798743--4798788	22	2.1	23	84	8	60	69	6	0	23	1.11
4799458--4799504	19	2.4	20	82	10	53	21	4	8	65	1.37
4800508--4800547	22	1.9	20	85	10	53	37	0	0	62	0.95
4800582--4800986	212	1.9	212	81	6	498	36	11	6	45	1.67
4809647--4809693	18	2.6	18	77	9	51	48	4	0	46	1.21
4809653--4809727	39	1.9	38	83	2	96	46	8	0	45	1.32
4812005--4812036	14	2.3	14	94	0	55	59	0	0	40	0.97
4829003--4829063	25	2.6	23	75	14	70	65	1	11	21	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4829202--4829233	2	16.0	2	100	0	64	0	50	0	50	1.00
4830756--4830781	2	13.0	2	100	0	52	50	0	0	50	1.00
4832606--4832993	60	6.5	60	84	3	444	35	10	6	47	1.64
4832606--4832994	180	2.2	179	84	4	514	35	10	6	47	1.64
4834638--4834872	85	2.8	86	76	3	251	45	14	17	21	1.85
4835049--4835087	17	2.3	17	81	0	51	38	10	12	38	1.78
4835083--4835126	17	2.6	17	77	0	52	43	9	9	38	1.68
4835098--4835189	33	2.7	34	79	5	105	36	9	15	38	1.80
4835125--4835303	34	5.2	34	77	5	162	37	11	17	32	1.86
4836522--4836569	6	7.8	6	86	9	62	14	2	0	83	0.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117