genome.fa.s101.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  24  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3036170--3036222	27	2.0	28	85	7	74	47	1	0	50	1.12
3036162--3036225	12	5.2	13	77	15	57	45	1	0	53	1.10
3039750--3039775	3	8.7	3	100	0	52	34	0	0	65	0.93
3040610--3040637	2	14.0	2	100	0	56	50	0	0	50	1.00
3054549--3054588	19	2.1	19	90	0	62	35	17	15	32	1.91
3057020--3057488	259	1.8	260	83	6	628	41	17	14	26	1.88
3057766--3057807	22	1.9	22	85	0	57	61	4	2	30	1.29
3061523--3061562	21	1.9	21	94	0	71	47	5	0	47	1.24
3061519--3061567	21	2.5	20	83	9	64	46	4	0	48	1.20
3061558--3061610	27	2.0	28	85	7	74	47	1	0	50	1.12
3061550--3061613	12	5.2	13	77	15	57	45	1	0	53	1.10
3062594--3062632	18	2.2	18	100	0	78	53	10	10	25	1.66
3064114--3064147	18	1.9	17	88	5	50	61	0	0	38	0.96
3065393--3065440	3	16.0	3	100	0	96	33	0	0	66	0.92
3080733--3080774	21	2.0	21	100	0	84	38	14	9	38	1.78
3083265--3083314	25	2.0	25	100	0	100	40	8	16	36	1.77
3084703--3085249	258	2.1	257	81	5	647	43	16	12	26	1.84
3085588--3085639	27	1.9	27	100	0	104	55	5	7	30	1.52
3086003--3086037	3	11.7	3	93	0	61	34	0	2	62	1.10
3086862--3086891	2	15.0	2	100	0	60	50	0	0	50	1.00
3101252--3101285	16	2.1	16	100	0	68	38	26	23	11	1.89
3101576--3101701	67	1.9	67	94	0	225	53	4	7	34	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3103061--3103100	19	2.1	19	85	4	53	35	7	0	57	1.27
3109528--3109570	17	2.7	15	76	16	50	79	2	2	16	0.95
3109528--3109570	8	5.2	8	77	5	50	79	2	2	16	0.95
3112699--3113164	258	1.8	257	83	6	629	40	17	14	26	1.88
3116611--3116651	20	2.1	19	86	13	57	31	0	0	68	0.90
3116680--3116720	22	1.9	21	85	5	55	56	0	0	43	0.99
3118037--3118064	2	14.0	2	100	0	56	50	0	0	50	1.00
3118276--3118307	2	16.0	2	100	0	64	50	0	0	50	1.00
3119813--3119866	27	2.0	27	96	0	99	48	16	11	24	1.79
3121457--3121590	64	2.1	64	78	12	141	45	11	7	35	1.68
3122675--3122717	14	3.3	14	78	15	56	51	0	0	48	1.00
3122804--3122846	23	1.9	22	81	13	52	46	2	6	44	1.43
3122886--3122926	21	2.0	21	85	9	57	34	0	0	65	0.93
3123219--3123392	62	2.8	62	77	8	158	37	16	13	32	1.87
3127511--3127586	34	2.2	33	79	6	80	42	11	7	38	1.71
3131182--3131207	7	3.7	7	100	0	52	53	0	0	46	1.00
3142005--3142034	16	1.9	16	93	6	53	70	0	13	16	1.18
3142558--3142625	9	7.4	9	75	18	52	20	2	2	73	1.09
3142592--3142735	16	9.1	16	72	19	83	30	2	4	63	1.25
3142589--3142735	3	48.0	3	69	22	67	30	2	4	63	1.24
3142651--3142701	23	2.3	22	80	12	59	33	0	3	62	1.13
3142589--3142729	14	10.7	13	71	19	89	30	1	4	63	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3142683--3142735	17	3.2	17	84	5	65	32	3	1	62	1.24
3143200--3143236	19	1.9	19	88	0	56	32	13	16	37	1.87
3143306--3143331	11	2.4	11	100	0	52	15	46	19	19	1.85
3143720--3143860	10	13.8	10	69	18	76	18	4	2	73	1.13
3143778--3143845	19	3.3	21	76	15	54	14	5	1	77	1.02
3143734--3143858	46	2.7	45	80	9	119	19	5	2	72	1.15
3143797--3143845	19	2.7	18	78	9	55	14	4	2	79	0.97
3143824--3143871	25	1.9	25	87	8	71	14	8	0	77	0.99
3143794--3143870	35	2.2	36	83	2	93	15	6	1	76	1.05
3143794--3143870	17	4.4	17	73	16	50	15	6	1	76	1.05
3143897--3144228	58	5.7	58	88	4	490	44	6	13	34	1.71
3143881--3144227	176	2.0	177	94	2	610	44	7	12	34	1.70
3143878--3144228	118	3.0	116	87	6	510	45	7	12	34	1.71
3144263--3144287	12	2.1	12	100	0	50	16	0	8	76	1.02
3146448--3146496	16	2.7	19	78	15	59	32	0	6	61	1.21
3146439--3146509	16	4.7	15	73	16	58	29	0	5	64	1.16
3146436--3146594	84	1.9	83	81	12	193	27	1	5	65	1.25
3146569--3146611	18	2.4	18	84	11	61	16	4	2	76	1.05
3147516--3147540	13	1.9	13	100	0	50	8	0	4	88	0.64
3147568--3147613	17	2.8	17	83	3	58	15	8	0	76	1.02
3147567--3147662	25	4.0	24	76	22	78	15	8	0	76	1.02
3147568--3147657	6	14.7	6	71	16	60	15	7	0	76	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3147668--3148083	59	6.9	59	87	7	554	44	7	13	34	1.72
3147668--3148083	181	2.3	178	91	4	665	44	7	13	34	1.72
3149192--3149337	53	2.8	51	84	6	184	42	5	22	29	1.76
3158794--3158918	66	1.9	67	89	1	198	54	4	5	35	1.45
3158894--3158923	15	1.9	16	93	6	53	56	0	10	33	1.32
3159129--3159175	23	2.0	25	83	8	62	61	2	2	34	1.20
3161785--3161840	22	2.5	23	83	16	73	3	16	0	80	0.85
3161789--3161840	23	2.4	21	84	15	70	3	15	0	80	0.85
3161786--3161839	18	2.8	19	86	10	67	3	16	0	79	0.87
3161785--3161840	19	2.8	19	80	20	62	3	16	0	80	0.85
3161784--3161845	23	2.6	24	78	17	67	3	14	1	80	0.91
3164883--3164923	18	2.2	18	86	4	55	29	0	2	68	1.03
3164959--3164997	12	3.2	12	82	7	51	61	0	0	38	0.96
3166618--3166714	20	4.6	20	68	23	56	28	3	2	65	1.18
3166664--3166766	4	23.2	4	76	14	55	27	0	1	69	1.05
3166676--3166727	5	10.4	5	82	10	54	25	0	1	73	0.94
3166687--3166731	21	2.1	22	80	12	58	28	0	2	68	1.01
3166697--3166752	21	2.6	22	81	15	57	33	0	3	62	1.12
3166741--3166781	21	2.0	21	85	0	55	21	2	2	73	1.07
3167344--3167391	20	2.4	20	82	6	62	35	14	12	37	1.84
3167720--3167845	13	9.4	12	67	24	58	19	3	3	73	1.10
3167720--3167760	17	2.5	17	88	4	66	19	0	2	78	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3167769--3167836	27	2.7	25	72	20	61	16	5	1	76	1.05
3167799--3167857	17	3.6	16	77	6	64	13	6	1	77	1.03
3167798--3167857	28	2.1	29	82	14	72	13	6	1	78	1.02
3167827--3167868	22	1.9	22	85	9	59	14	9	2	73	1.18
3167883--3168100	61	3.6	61	88	3	318	43	7	14	34	1.73
3172285--3172341	13	4.8	11	77	18	53	78	0	14	7	0.94
3172278--3172341	22	2.8	23	79	11	69	79	0	12	7	0.92
3172278--3172336	23	2.6	23	82	15	70	79	0	13	6	0.92
3173580--3174078	41	12.1	40	86	8	650	23	16	21	38	1.93
3174370--3174458	5	16.6	5	74	15	56	26	0	3	69	1.04
3174373--3174456	31	2.8	32	75	15	97	26	0	3	70	1.04
3174317--3174451	14	9.9	14	66	26	51	28	2	2	65	1.19
3175421--3175445	13	1.9	13	100	0	50	16	0	4	80	0.87
3175422--3175457	17	2.1	17	94	0	63	19	0	2	77	0.88
3175421--3175566	5	29.8	5	69	16	51	19	5	2	72	1.16
3175470--3175526	27	2.1	27	81	12	64	15	7	1	75	1.10
3175477--3175544	15	4.3	15	75	14	66	13	7	1	77	1.03
3175526--3175567	22	1.9	22	85	9	59	14	11	2	71	1.24
3175582--3175861	122	2.3	118	87	2	416	43	6	13	35	1.70
3175582--3175861	60	4.7	59	81	5	321	43	6	13	35	1.70
3179173--3179216	19	2.3	19	88	11	63	34	0	0	65	0.93
3180587--3180618	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3184195--3184570	192	2.0	191	91	3	612	36	15	11	36	1.83
3184702--3185096	207	1.9	209	80	7	466	32	13	7	45	1.72
3186136--3186189	23	2.3	23	84	9	65	7	3	9	79	1.03
3186155--3186185	15	2.1	15	93	0	53	6	0	9	83	0.79
3186857--3186894	15	2.4	17	86	8	53	5	7	5	81	0.98
3187997--3188099	52	2.0	52	86	3	145	25	14	7	52	1.68
3189086--3189132	22	2.1	22	96	0	85	46	21	0	31	1.51
3189089--3189130	11	3.8	11	84	12	59	52	19	0	28	1.46
3191433--3191475	21	2.0	21	86	8	61	48	0	0	51	1.00
3192211--3192253	18	2.4	18	84	3	61	39	0	0	60	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117