genome.fa.s101.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  66  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12199049--12199112	33	1.9	33	87	0	92	50	10	15	23	1.76
12199067--12199155	34	2.7	33	84	3	115	51	10	15	22	1.73
12199171--12199246	35	2.1	37	78	7	84	55	10	11	22	1.66
12199413--12199626	34	6.2	36	72	9	126	49	9	18	22	1.77
12199413--12199624	103	2.1	103	79	3	230	49	9	18	22	1.77
12199738--12199791	28	1.9	28	100	0	108	18	24	11	46	1.81
12205069--12205119	20	2.6	20	93	3	86	29	27	5	37	1.80
12205069--12205128	20	3.0	20	88	7	79	33	26	5	35	1.78
12210932--12210974	17	2.4	18	84	3	61	34	16	9	39	1.80
12213282--12213313	11	2.9	11	100	0	64	53	18	0	28	1.45
12217790--12217852	11	5.6	12	80	12	80	49	15	0	34	1.45
12217798--12217862	33	2.0	33	87	0	94	46	15	1	36	1.55
12217845--12217907	22	3.0	22	69	21	62	49	12	4	33	1.62
12217894--12217924	11	2.8	11	95	0	53	45	6	9	38	1.63
12222604--12222650	19	2.5	19	86	6	69	55	17	10	17	1.69
12224229--12224264	19	1.9	20	88	11	58	33	0	0	66	0.92
12225644--12225675	15	2.1	15	100	0	64	40	15	12	31	1.85
12229147--12229241	42	2.3	42	81	0	100	46	14	0	38	1.45
12231259--12231292	18	1.9	18	88	5	52	52	0	20	26	1.46
12231255--12231356	52	2.0	52	84	3	134	43	5	21	29	1.76
12233042--12233079	19	2.0	20	89	5	60	44	0	0	55	0.99
12237634--12237697	26	2.3	27	77	15	69	46	1	0	51	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12238053--12238116	23	2.7	23	80	2	65	46	7	4	40	1.53
12238814--12238857	19	2.4	19	96	3	81	18	15	4	61	1.50
12238661--12239041	196	1.9	196	91	2	611	30	18	9	40	1.84
12242511--12242558	25	1.9	25	95	0	87	50	27	0	22	1.50
12243577--12243617	20	2.0	21	90	4	66	68	4	4	21	1.28
12245425--12245644	19	12.1	19	70	10	120	40	13	16	28	1.87
12245491--12245644	72	2.2	70	84	4	193	39	11	17	31	1.86
12246798--12246835	9	4.3	9	83	6	51	0	10	2	86	0.66
12246799--12246869	17	4.3	16	77	13	65	4	8	4	83	0.91
12246799--12246870	32	2.3	32	83	4	85	5	8	4	81	0.96
12248076--12248181	50	2.1	50	87	5	151	40	12	6	40	1.69
12248517--12248585	30	2.3	30	82	0	84	27	21	10	40	1.85
12253517--12253550	18	1.9	17	88	5	50	44	0	5	50	1.26
12253588--12253643	23	2.4	23	96	0	103	44	3	5	46	1.43
12259676--12259712	18	2.0	20	89	10	60	37	0	0	62	0.96
12261798--12261849	20	2.7	20	82	8	54	32	3	1	61	1.25
12264762--12264797	3	12.0	3	100	0	72	33	0	0	66	0.92
12267010--12267061	16	3.3	15	79	10	59	15	13	26	44	1.84
12267016--12267061	16	2.9	16	86	0	65	17	15	26	41	1.88
12266954--12267061	32	3.4	31	72	7	92	21	13	22	42	1.88
12270578--12270637	30	2.0	30	83	0	75	33	5	10	51	1.57
12270585--12270648	30	2.1	30	82	0	74	35	3	7	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12271779--12271803	13	1.9	13	100	0	50	52	0	0	48	1.00
12271786--12271822	16	2.2	17	90	4	58	56	0	2	40	1.13
12272302--12272336	2	17.5	2	93	0	52	42	0	5	51	1.25
12272291--12272330	16	2.6	16	88	7	57	40	2	5	52	1.37
12272291--12272332	18	2.4	18	88	7	61	40	2	4	52	1.35
12272984--12273031	16	2.8	17	78	12	53	66	0	2	31	1.03
12273568--12273606	18	2.2	18	86	13	55	79	2	2	15	0.95
12278293--12278327	15	2.3	15	95	0	61	42	0	22	34	1.54
12278448--12278489	16	2.6	16	85	11	59	16	2	14	66	1.35
12285306--12285341	18	1.9	19	88	5	56	69	0	2	27	1.02
12292495--12292716	114	1.9	115	83	4	288	49	5	10	34	1.61
12292519--12292912	187	2.1	187	89	2	596	50	5	9	34	1.57
12292637--12292794	73	2.2	74	80	6	171	51	5	9	33	1.58
12292753--12292829	40	1.9	41	81	7	95	50	7	7	33	1.60
12294328--12294360	16	2.0	17	94	5	59	42	6	0	51	1.26
12298477--12298510	14	2.4	14	90	0	50	8	2	5	82	0.93
12298494--12298539	18	2.5	19	85	3	67	10	4	2	82	0.89
12298711--12298748	15	2.5	15	84	12	51	7	7	0	84	0.79
12298920--12298972	24	2.2	24	83	6	63	5	15	0	79	0.91
12298928--12298973	17	2.8	17	87	9	60	4	15	0	80	0.86
12298898--12298972	7	9.9	7	72	16	51	6	12	1	80	0.97
12298937--12298974	17	2.3	17	95	4	69	2	10	0	86	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12302428--12302582	83	1.9	83	79	5	179	32	12	16	37	1.87
12303307--12303350	23	1.9	23	81	9	54	27	4	6	61	1.41
12304528--12304571	21	2.1	21	86	0	61	20	11	29	38	1.87
12304605--12304659	18	3.0	18	74	12	58	80	1	9	9	0.99
12308713--12308744	8	3.9	8	92	8	55	46	0	0	53	1.00
12308713--12308744	17	1.9	16	93	6	55	46	0	0	53	1.00
12309496--12309542	18	2.7	18	80	9	53	63	6	8	21	1.44
12311128--12311159	11	2.8	12	90	9	50	0	37	0	62	0.95
12311766--12311790	10	2.5	10	100	0	50	0	8	0	92	0.40
12317855--12318061	81	2.5	81	75	6	195	28	13	21	36	1.91
12318277--12318310	15	2.2	16	89	5	52	44	0	5	50	1.26
12328231--12328327	48	2.0	48	87	0	140	36	11	24	27	1.90
12335101--12335142	14	3.2	13	87	9	59	45	0	0	54	0.99
12339612--12339668	19	3.0	19	78	12	55	68	0	0	31	0.90
12339612--12339671	20	3.1	20	79	9	54	68	0	0	31	0.90
12340735--12340783	22	2.3	22	86	6	66	61	0	0	38	0.96
12345366--12345555	94	2.0	95	89	1	292	32	17	19	30	1.95
12350480--12350526	23	2.0	23	100	0	94	40	8	29	21	1.83
12351122--12351167	14	3.4	14	75	22	53	67	0	0	32	0.91
12351126--12351169	12	3.5	12	77	22	54	68	0	0	31	0.90
12351124--12351184	20	3.0	20	78	7	52	67	0	0	32	0.91
12352249--12352298	22	2.4	22	86	6	68	62	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12352260--12352308	21	2.4	21	83	6	66	61	2	0	36	1.08
12356881--12357070	94	2.0	95	88	1	283	32	17	18	31	1.94
12361919--12361989	36	1.9	37	82	2	90	56	2	7	33	1.41
12364227--12364573	148	2.4	143	78	5	356	39	10	14	36	1.80
12369280--12369314	2	17.5	2	100	0	70	51	0	0	48	1.00
12370840--12370904	32	2.0	32	90	0	103	44	13	7	33	1.73
12372970--12373063	47	2.0	47	87	4	136	40	15	19	24	1.90
12381463--12381507	22	2.0	23	87	12	67	4	17	2	75	1.07
12382915--12382968	12	4.3	13	75	15	60	75	1	3	18	1.03
12384658--12384693	18	2.0	18	88	0	54	41	2	0	55	1.14
12384668--12384702	18	1.9	18	88	0	52	45	0	0	54	0.99
12387082--12387122	3	13.3	3	94	5	73	65	0	0	34	0.93
12387834--12387873	21	2.0	20	85	5	53	45	0	45	10	1.37
12389236--12389276	21	2.0	21	90	0	64	26	24	7	41	1.81
12390005--12392641	161	16.4	160	80	4	2387	42	15	9	32	1.79
12389859--12392641	644	4.3	642	80	5	2790	42	15	9	32	1.79
12393766--12393802	13	2.8	13	87	0	56	59	5	8	27	1.48
12398720--12398794	29	2.6	29	78	18	75	61	0	5	33	1.19
12398745--12398807	29	2.3	27	79	17	67	61	0	3	34	1.12
12399137--12399169	2	16.5	2	100	0	66	51	0	0	48	1.00
12399169--12399197	2	14.5	2	100	0	58	51	0	48	0	1.00
12400257--12400316	29	2.1	29	100	0	120	10	10	23	56	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12404411--12404489	6	13.0	6	75	17	58	25	0	0	74	0.82
12404411--12404468	21	2.8	21	79	12	66	22	0	0	77	0.77
12404414--12404489	26	3.0	26	79	11	77	25	0	0	75	0.81
12406072--12406113	3	13.7	3	95	5	75	69	0	0	30	0.89
12406624--12406769	77	1.9	76	81	4	177	28	13	14	43	1.84
12410661--12411039	127	3.0	126	88	3	530	45	9	17	27	1.79
12413986--12414309	142	2.3	143	78	7	336	41	11	12	34	1.79
12415222--12415260	12	3.3	12	83	16	55	35	5	0	58	1.20
12415669--12415721	13	4.0	13	78	9	54	9	13	0	77	0.99
12419910--12419954	20	2.2	20	84	8	54	33	2	15	48	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117