genome.fa.s101.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  28  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3929020--3929076	20	2.8	21	73	10	55	40	1	5	52	1.34
3929106--3929158	14	4.2	13	71	28	51	37	0	0	62	0.96
3929110--3929154	23	2.0	23	91	8	74	37	0	0	62	0.96
3929118--3929150	16	2.1	16	94	0	57	33	0	0	66	0.92
3929257--3929316	18	3.3	19	75	15	63	45	0	1	53	1.10
3929214--3929312	48	2.1	47	80	10	105	43	0	2	54	1.11
3929429--3929500	27	2.6	29	81	12	80	54	1	2	41	1.23
3929778--3929807	14	2.1	14	100	0	60	53	0	0	46	1.00
3930238--3930307	15	4.3	15	70	22	52	44	0	1	54	1.09
3930242--3930345	36	2.9	36	81	5	106	44	0	0	54	1.06
3930955--3930984	13	2.2	14	94	5	53	40	0	0	60	0.97
3930953--3930986	14	2.4	15	85	14	54	41	0	0	58	0.98
3933830--3933885	26	2.2	26	81	15	71	8	7	3	80	1.01
3933951--3934057	17	6.4	16	73	12	74	71	3	3	20	1.17
3933952--3934055	25	4.4	24	69	17	74	73	3	3	19	1.15
3933932--3934057	14	9.1	14	68	20	52	70	3	4	20	1.22
3933951--3934054	5	20.0	5	69	23	56	72	3	3	20	1.17
3933952--3934055	31	3.1	33	73	17	99	73	3	3	19	1.15
3934826--3934852	3	9.0	3	100	0	54	66	0	0	33	0.92
3935056--3935119	3	21.7	3	78	9	69	60	3	1	34	1.22
3936765--3936811	22	2.2	21	84	3	58	4	10	6	78	1.06
3941857--3941993	32	4.3	31	75	3	112	41	3	7	47	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3943448--3943476	7	4.1	7	100	0	58	86	0	0	13	0.58
3943683--3943753	22	3.1	23	78	8	65	56	0	2	40	1.14
3952867--3952986	62	1.9	63	86	1	170	14	14	12	59	1.62
3960260--3960778	260	2.0	260	97	1	986	37	7	23	30	1.83
3961564--3961615	23	2.2	23	79	3	59	28	13	9	48	1.74
3967998--3968030	16	2.1	16	100	0	66	39	0	18	42	1.50
3970895--3971001	54	2.0	54	84	0	142	36	13	14	36	1.84
3972294--3972329	2	18.5	2	94	5	65	50	0	0	50	1.00
3979459--3979528	27	2.6	27	78	10	81	50	0	2	47	1.16
3980156--3980271	57	2.0	58	89	1	180	56	11	14	18	1.67
3980553--3980584	2	16.5	2	93	6	57	53	0	0	46	1.00
3980553--3980597	21	2.1	21	84	8	56	57	0	2	40	1.11
3995279--3995330	23	2.3	23	87	6	72	63	1	1	32	1.16
3995533--3995563	11	2.7	11	95	5	53	64	0	3	32	1.09
3995993--3996030	19	2.0	20	89	5	60	36	0	0	63	0.95
4005781--4006238	49	9.7	47	84	7	561	27	12	24	36	1.90
4005780--4006238	97	4.8	97	85	6	575	27	11	23	36	1.90
4006420--4006466	19	2.6	18	86	10	60	63	0	4	31	1.13
4006420--4006467	18	2.7	17	87	6	60	62	0	4	33	1.14
4006420--4006467	17	2.6	18	83	12	62	62	0	4	33	1.14
4007794--4007842	19	2.5	19	71	15	55	61	0	10	28	1.29
4008014--4008044	11	2.7	11	95	5	53	64	0	3	32	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4008780--4008818	14	2.8	14	80	0	51	38	0	5	56	1.22
4009137--4009181	22	2.0	22	86	8	63	51	2	4	42	1.34
4009494--4009533	21	2.0	20	85	5	53	62	2	0	35	1.09
4010386--4010442	18	2.7	23	69	28	61	57	0	0	42	0.98
4010400--4010445	19	2.4	19	82	7	58	60	0	0	39	0.97
4014244--4014349	54	1.9	55	80	1	124	28	8	7	55	1.57
4014639--4014687	25	2.0	25	84	8	64	40	8	4	46	1.52
4014755--4014797	22	2.0	22	90	9	70	74	4	0	20	1.00
4015377--4015407	16	1.9	16	93	0	53	6	9	3	80	0.99
4015376--4015407	17	1.9	16	93	6	55	6	9	3	81	0.97
4015498--4015550	24	2.2	24	79	0	61	37	22	0	39	1.54
4015872--4015977	42	2.5	43	83	7	137	47	16	9	26	1.77
4016919--4017067	79	1.9	79	86	5	212	28	24	10	36	1.88
4016917--4017098	79	2.3	80	80	7	210	30	24	9	35	1.88
4017783--4017812	8	3.8	8	90	0	51	10	13	0	76	1.01
4017780--4017840	16	4.1	15	76	14	54	6	9	0	83	0.80
4021883--4021985	53	1.9	53	82	5	127	28	9	6	55	1.58
4022243--4022303	26	2.4	25	77	17	72	44	9	0	45	1.37
4022245--4022298	26	2.1	26	86	6	74	48	9	0	42	1.35
4022245--4022308	25	2.5	25	78	16	69	42	10	0	46	1.39
4023174--4023224	15	3.2	15	78	13	57	13	9	1	74	1.15
4023898--4024100	29	7.1	30	73	9	106	48	31	2	17	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4023964--4024096	14	9.4	14	75	12	105	49	33	0	15	1.50
4023935--4024086	29	5.3	27	76	15	121	48	33	1	16	1.58
4027242--4027281	19	2.2	19	90	4	64	45	2	5	47	1.38
4027420--4027510	31	2.9	32	83	3	114	40	8	7	42	1.64
4027608--4027691	14	6.2	13	72	16	57	48	3	0	47	1.19
4027600--4027680	40	2.0	40	83	9	103	46	3	0	49	1.19
4027602--4027691	26	3.4	25	76	14	76	47	3	0	48	1.18
4028204--4028230	14	1.9	14	100	0	54	62	7	7	22	1.46
4030325--4030367	21	2.0	21	86	0	59	25	0	11	62	1.29
4030822--4030863	2	21.0	2	95	0	75	47	0	2	50	1.14
4035809--4035868	29	2.0	29	87	3	84	50	0	3	46	1.18
4042193--4042223	10	3.0	10	95	4	53	58	0	0	41	0.98
4042276--4042338	18	3.1	21	65	23	53	36	4	6	52	1.48
4045076--4045114	13	2.9	14	88	3	53	69	2	2	25	1.14
4049026--4049060	18	1.9	18	94	0	61	31	17	5	45	1.71
4049757--4049846	42	2.1	42	80	8	103	44	4	31	20	1.71
4057434--4057460	8	3.4	8	100	0	54	44	0	0	55	0.99
4059940--4060078	38	3.7	38	70	13	106	43	5	2	49	1.36
4063608--4063665	29	2.0	30	86	3	82	39	5	12	43	1.64
4070226--4070250	3	8.3	3	100	0	50	32	0	0	68	0.90
4070375--4070423	19	2.5	20	83	16	66	53	0	0	46	1.00
4070685--4070712	14	2.0	14	100	0	56	35	28	7	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4071315--4071402	46	1.9	45	90	2	140	22	20	6	50	1.72
4080610--4080639	14	2.1	14	100	0	60	36	0	36	26	1.57
4081588--4081675	35	2.6	35	81	12	94	28	1	5	64	1.23
4081587--4081776	67	2.8	66	77	15	167	26	3	4	65	1.27
4082256--4082294	20	2.0	20	84	0	51	38	30	20	10	1.86
4082851--4083127	59	4.7	57	88	6	378	44	7	13	34	1.73
4087539--4087650	56	2.0	57	94	1	199	28	18	18	33	1.95
4094490--4094519	6	5.0	6	100	0	60	33	16	33	16	1.92
4094490--4094528	18	2.2	18	90	0	60	35	17	28	17	1.94
4095151--4095185	16	2.2	16	89	0	52	31	8	14	45	1.75
4098553--4098595	11	3.9	11	75	0	50	27	0	20	51	1.48
4098651--4098749	52	1.9	52	87	0	144	44	8	18	29	1.78
4103100--4103146	23	2.0	23	83	0	58	42	10	4	42	1.59
4106911--4107064	52	3.0	51	81	7	186	28	22	7	41	1.80
4107618--4107685	35	1.9	35	81	0	82	41	38	2	17	1.65
4107864--4108008	52	2.8	52	83	7	177	28	20	6	44	1.77
4120775--4120823	16	2.9	16	75	6	53	48	0	0	51	1.00
4127683--4127768	43	2.0	43	100	0	172	25	23	13	37	1.92
4128047--4128113	2	33.5	2	82	5	82	46	5	1	46	1.36
4144000--4144048	16	2.9	16	75	6	53	48	0	0	51	1.00
4148562--4148659	46	2.1	47	87	9	139	60	4	3	32	1.31
4148643--4148688	20	2.3	20	77	3	58	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4151525--4151610	43	2.0	43	100	0	172	25	23	13	37	1.92
4151889--4151954	2	33.5	2	79	8	73	46	6	1	45	1.37
4162507--4162548	19	2.3	19	88	8	61	35	0	0	64	0.94
4171563--4171601	3	13.3	3	91	5	62	64	0	2	33	1.08
4171863--4172004	52	2.7	51	78	5	151	51	7	14	26	1.69
4172011--4172085	36	2.1	36	92	0	123	38	2	18	40	1.65
4172487--4172598	31	3.6	31	80	0	134	32	23	20	24	1.98
4172935--4172974	11	3.6	11	100	0	80	20	0	27	52	1.46
4173001--4173105	52	2.0	52	83	3	131	43	7	21	26	1.79
4174557--4174605	21	2.2	24	89	10	77	46	6	8	38	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117