genome.fa.s101.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  33  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5283998--5284032	16	2.2	16	94	0	61	62	2	2	31	1.24
5284127--5284192	27	2.5	27	80	9	75	50	0	0	50	1.00
5284274--5284309	15	2.4	15	90	0	63	52	2	0	44	1.15
5287079--5287120	13	3.2	13	81	15	50	28	2	21	47	1.63
5287750--5287782	7	5.0	7	85	14	52	15	0	0	84	0.61
5287755--5287797	12	3.3	12	90	9	59	18	2	0	79	0.85
5287756--5287799	22	2.1	21	88	12	65	18	2	0	79	0.83
5289169--5289195	6	4.5	6	100	0	54	0	33	0	66	0.92
5308143--5308172	5	5.8	5	96	4	51	80	0	0	20	0.72
5320804--5320867	26	2.5	26	84	2	76	37	0	1	60	1.06
5320808--5320859	10	4.7	11	79	13	54	36	0	1	61	1.07
5323679--5323729	24	2.0	26	81	7	61	33	0	5	60	1.21
5324165--5324207	2	21.5	2	100	0	86	0	48	0	51	1.00
5324361--5324385	7	3.6	7	100	0	50	12	0	28	60	1.32
5328140--5328188	18	2.7	18	78	12	55	40	0	0	59	0.98
5329585--5329641	26	2.2	26	93	0	96	40	3	3	52	1.35
5329768--5329823	27	2.1	27	93	0	94	44	19	10	25	1.83
5330130--5330196	32	2.1	32	88	5	100	70	2	0	26	1.02
5332432--5332493	29	2.1	29	81	0	70	32	24	6	37	1.81
5332523--5332658	59	2.3	60	80	5	159	30	8	25	35	1.85
5332523--5332660	30	4.6	30	81	5	154	30	7	26	35	1.85
5346565--5346608	22	2.0	22	86	0	61	43	13	11	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5348498--5348524	14	1.9	14	100	0	54	77	7	0	14	0.97
5348561--5348898	59	5.7	58	81	9	405	34	12	7	45	1.69
5348561--5348898	181	1.9	180	92	3	572	34	12	7	45	1.69
5348932--5349031	10	9.0	10	73	20	58	78	4	2	16	1.00
5348922--5349031	25	4.2	25	72	22	75	78	3	2	15	1.01
5348986--5349057	25	2.9	24	80	8	81	81	4	4	9	0.94
5350314--5350395	1	82.0	1	72	0	65	1	1	10	86	0.68
5350314--5350395	9	9.6	8	80	17	78	1	1	10	86	0.68
5350406--5350615	41	5.0	41	92	2	339	36	22	17	23	1.95
5350594--5350637	20	2.2	20	100	0	88	31	15	13	38	1.87
5350553--5350675	61	2.0	60	96	1	228	35	21	15	27	1.93
5350614--5350717	40	2.6	41	93	1	183	34	22	16	26	1.95
5350512--5350717	101	2.0	102	96	2	380	35	21	16	26	1.95
5351894--5351948	7	8.0	7	75	16	53	1	12	0	85	0.68
5351894--5351949	14	3.9	14	84	15	62	1	14	0	83	0.72
5351894--5351948	15	3.6	16	83	9	62	1	12	0	85	0.68
5351923--5351975	16	3.4	17	75	15	51	5	22	0	71	1.06
5354401--5354432	9	3.6	9	100	0	64	18	43	0	37	1.51
5355822--5356162	59	5.7	58	83	9	427	33	13	8	44	1.74
5355822--5356168	182	1.9	183	93	1	608	33	13	8	44	1.75
5356184--5356236	16	3.2	16	84	12	56	73	0	5	20	1.03
5356245--5356314	24	3.0	23	77	6	68	80	5	2	11	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5357267--5357310	17	2.6	17	88	0	61	61	2	4	31	1.28
5357282--5357333	20	2.6	19	77	19	52	63	5	1	28	1.28
5368162--5368206	11	3.9	11	80	8	54	53	0	0	46	1.00
5368308--5368347	21	1.9	21	90	10	64	47	0	0	52	1.00
5368325--5368364	13	3.1	13	81	0	53	57	0	0	42	0.98
5368384--5368438	29	2.0	27	92	7	92	49	7	3	40	1.48
5368439--5368492	26	2.0	26	82	10	65	57	0	0	42	0.98
5369931--5369976	9	5.3	9	79	10	51	82	4	0	13	0.81
5377418--5377446	14	2.0	15	93	6	51	34	0	58	6	1.25
5378624--5378689	13	5.2	13	80	9	82	51	0	1	46	1.10
5378624--5378696	25	2.9	26	76	13	82	53	0	1	45	1.09
5378606--5378692	42	2.2	39	82	13	108	52	0	2	44	1.13
5378949--5379006	27	2.1	27	81	6	64	48	1	1	48	1.22
5378993--5379067	24	3.1	24	80	12	66	33	6	0	60	1.23
5380126--5380163	12	3.3	12	78	14	53	7	13	0	78	0.94
5380117--5380167	22	2.5	21	84	12	70	9	13	0	76	1.02
5380126--5380167	22	2.0	21	95	4	75	9	11	0	78	0.96
5382407--5382441	16	2.1	18	89	10	56	65	5	0	28	1.15
5388692--5388731	14	2.9	14	88	7	55	57	0	0	42	0.98
5391816--5391857	22	1.9	22	85	9	59	38	35	2	23	1.68
5393188--5393237	17	2.9	17	82	8	57	62	6	14	18	1.51
5396329--5396396	25	2.7	26	75	13	70	51	8	1	38	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5399159--5399198	3	13.3	3	100	0	80	67	0	0	32	0.91
5400610--5400651	2	21.5	2	80	4	50	59	0	0	40	0.97
5402334--5402393	25	2.4	25	81	8	70	45	1	6	46	1.39
5402870--5403077	49	4.3	48	78	15	207	54	7	9	28	1.58
5402878--5403092	97	2.2	98	84	10	266	56	6	7	28	1.54
5405588--5405641	17	3.2	17	94	0	99	22	11	25	40	1.87
5406725--5406814	30	3.0	30	72	16	87	38	11	1	48	1.46
5411861--5411912	27	1.9	27	96	0	95	32	7	11	48	1.68
5412213--5412269	27	2.1	27	80	6	62	35	5	8	50	1.56
5414076--5414101	2	13.0	2	100	0	52	50	0	0	50	1.00
5417338--5417382	18	2.5	18	92	0	72	35	33	4	26	1.77
5418161--5418210	24	2.2	23	82	10	68	38	4	2	56	1.30
5419202--5419248	15	3.1	15	82	14	60	48	2	0	48	1.13
5431008--5431052	11	3.9	11	80	11	54	68	2	0	28	1.01
5431014--5431063	24	2.1	24	88	3	75	66	4	0	30	1.10
5435406--5435524	52	2.3	52	92	5	197	47	9	8	35	1.66
5437800--5437825	12	2.2	12	100	0	52	46	0	0	53	1.00
5450862--5450909	25	1.9	25	91	0	78	64	10	0	25	1.25
5450862--5450915	25	2.2	25	86	3	74	64	11	0	24	1.25
5455440--5455479	20	2.0	20	95	0	71	20	20	27	32	1.97
5456466--5456537	25	2.8	25	78	14	76	44	5	8	41	1.58
5456978--5457074	45	2.2	45	79	3	106	52	5	11	30	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5460465--5460493	3	9.7	3	100	0	58	68	0	0	31	0.89
5477157--5477452	58	4.8	59	80	12	310	44	6	9	39	1.63
5477249--5477390	71	2.0	71	90	2	223	44	7	8	39	1.64
5477191--5477448	129	2.0	129	84	6	344	43	6	10	39	1.64
5484769--5484851	41	2.0	41	100	0	166	30	12	12	45	1.77
5487896--5487925	16	1.9	15	93	6	51	53	16	10	20	1.71
5488174--5488233	26	2.2	26	83	13	77	51	0	3	45	1.17
5510332--5510367	17	2.2	16	90	9	56	44	0	16	38	1.48
5514335--5514366	2	16.0	2	93	0	55	46	0	0	53	1.00
5515677--5515708	16	1.9	17	93	6	57	37	6	6	50	1.53
5520370--5520671	149	2.0	149	94	0	523	45	8	6	39	1.61
5521425--5521527	54	1.9	54	81	0	125	45	16	12	25	1.82
5524069--5524130	27	2.3	26	78	10	63	43	0	0	56	0.99
5530114--5530156	22	1.9	22	85	4	59	34	2	2	60	1.22
5533824--5533926	30	3.4	30	74	6	91	54	0	7	36	1.36
5544656--5544688	11	3.1	11	86	8	50	39	0	0	60	0.97
5544675--5544724	19	2.7	19	79	11	52	56	0	0	44	0.99
5544673--5544741	19	3.6	17	74	24	50	55	0	0	44	0.99
5544701--5544757	22	2.5	23	83	11	73	57	1	0	40	1.09
5564646--5564698	21	2.5	21	81	0	70	35	26	13	24	1.92
5564646--5564708	21	3.0	21	75	9	65	36	28	12	22	1.91
5573861--5573895	10	3.5	10	96	0	61	0	0	25	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5584880--5585011	39	3.3	39	81	3	156	28	10	16	44	1.81
5585170--5585610	39	11.3	39	75	6	304	26	9	19	44	1.81
5585170--5585610	118	3.8	117	78	2	420	26	9	19	44	1.81
5585170--5585575	79	5.2	77	76	9	313	26	9	19	44	1.81
5585521--5585643	39	3.1	39	79	5	106	26	11	20	42	1.85
5585791--5585816	3	8.7	3	100	0	52	30	0	0	69	0.89
5586671--5586744	11	6.8	10	71	19	51	12	2	5	79	1.00
5586683--5586740	15	3.9	14	75	20	55	15	1	6	75	1.09
5586676--5586744	22	3.3	20	77	18	61	13	1	5	79	0.97
5586949--5586996	17	2.9	17	79	14	57	70	0	2	27	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117