genome.fa.s101.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  56  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10416490--10416532	9	4.4	9	82	11	50	48	2	0	48	1.14
10417561--10417640	34	2.2	37	84	6	103	43	1	6	48	1.36
10417675--10418264	145	4.1	144	75	9	463	40	9	5	44	1.60
10417798--10418014	74	2.9	72	73	11	190	42	11	4	42	1.59
10417798--10418069	146	1.9	147	84	3	370	40	12	4	42	1.63
10418064--10418264	72	2.9	70	80	3	190	40	8	3	46	1.54
10418148--10418388	123	2.0	121	80	12	267	42	10	2	44	1.52
10418568--10418619	27	1.9	28	88	7	81	28	5	5	59	1.44
10420884--10420936	26	2.0	26	85	0	70	47	0	0	52	1.00
10424029--10424056	2	14.0	2	100	0	56	50	0	0	50	1.00
10427232--10427281	25	2.1	25	82	10	61	58	8	2	32	1.39
10429645--10429682	10	3.8	10	96	0	67	47	39	0	13	1.42
10430627--10430734	3	36.3	3	71	9	69	32	2	6	58	1.38
10430613--10430663	18	2.8	18	85	8	68	35	1	3	58	1.28
10431233--10431304	31	2.3	31	88	4	101	25	2	19	52	1.59
10431546--10431615	21	3.6	19	78	14	54	15	4	2	77	1.05
10431563--10431629	21	3.1	21	76	18	75	14	1	5	77	1.03
10434093--10434131	19	2.1	19	86	13	55	71	5	5	17	1.23
10435671--10435727	25	2.2	25	84	3	69	70	3	12	14	1.30
10435758--10435801	21	2.0	21	87	12	63	72	4	4	18	1.19
10435760--10435802	11	4.0	11	87	3	52	72	4	2	20	1.14
10438172--10438355	80	2.3	80	78	6	194	20	18	17	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10439656--10439702	24	2.0	24	83	8	60	38	8	17	36	1.80
10443965--10444014	21	2.4	21	86	0	64	16	24	26	34	1.95
10452235--10452274	4	10.2	4	89	5	64	20	0	27	52	1.46
10457287--10457324	17	2.2	17	95	0	67	26	26	13	34	1.93
10473188--10473218	15	2.1	15	100	0	62	54	12	0	32	1.38
10478213--10478265	24	2.1	25	82	10	63	22	0	20	56	1.42
10478655--10478693	21	1.9	20	89	5	60	48	15	5	30	1.66
10488457--10488500	12	3.5	12	81	9	52	68	2	0	29	1.02
10488472--10488518	21	2.2	22	85	11	62	57	4	2	36	1.30
10491361--10491541	53	3.4	53	78	9	188	37	11	4	46	1.61
10495714--10495764	18	2.9	17	80	11	59	68	1	0	29	1.00
10496592--10496657	32	2.1	32	91	0	105	39	3	9	48	1.50
10502220--10502400	90	2.0	90	93	0	308	39	11	10	38	1.76
10503207--10503308	53	1.9	52	84	2	132	48	23	9	18	1.78
10504185--10504472	63	4.6	61	77	7	227	36	6	9	46	1.63
10504241--10504725	125	4.0	121	80	12	496	38	5	9	46	1.59
10504377--10504590	110	1.9	110	89	3	333	40	4	8	46	1.56
10504498--10504725	63	3.6	62	71	9	176	39	3	9	46	1.55
10504248--10504711	235	2.0	236	86	3	659	38	5	9	46	1.59
10504483--10504838	125	2.8	126	78	6	344	38	6	8	46	1.59
10511094--10511126	12	2.8	12	90	0	57	0	57	0	42	0.98
10512930--10513000	29	2.4	30	73	19	78	57	0	2	39	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10513609--10513633	12	2.1	12	100	0	50	48	8	0	44	1.32
10519023--10519332	164	1.9	163	89	2	478	35	11	27	25	1.90
10523424--10523457	18	1.9	18	94	5	61	61	0	0	38	0.96
10523896--10523998	18	5.6	18	65	21	52	28	2	4	64	1.29
10527792--10527960	89	1.9	89	97	0	320	29	13	16	40	1.87
10527777--10527967	89	2.2	89	91	2	314	28	14	15	41	1.86
10528284--10528312	3	9.7	3	100	0	58	31	0	0	68	0.89
10529606--10529645	18	2.0	21	86	13	59	17	5	0	77	0.94
10529680--10529766	37	2.4	36	75	9	86	51	5	2	40	1.38
10534794--10534830	17	2.2	17	90	4	58	56	2	0	40	1.13
10535724--10535752	2	14.5	2	100	0	58	51	0	0	48	1.00
10535838--10535870	16	2.0	17	88	5	50	45	0	0	54	0.99
10544449--10544558	30	3.7	30	82	7	120	36	8	7	48	1.61
10547078--10547344	45	5.9	45	78	6	245	46	13	12	26	1.79
10547100--10547337	91	2.6	90	84	5	293	48	13	11	26	1.76
10547078--10547345	136	2.0	135	82	8	330	46	13	12	27	1.79
10548412--10548485	23	3.3	23	76	14	73	10	10	1	77	1.07
10548447--10548491	12	3.8	12	85	8	65	4	6	0	88	0.61
10548430--10548487	25	2.2	27	90	6	93	8	10	0	81	0.89
10553730--10553755	11	2.4	11	100	0	52	88	0	11	0	0.52
10561664--10561693	3	9.7	3	92	7	51	36	0	0	63	0.95
10561903--10561940	17	2.2	18	86	13	53	78	5	0	15	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10565242--10565367	27	4.6	26	75	11	76	57	3	1	37	1.24
10565281--10565339	19	3.2	18	75	20	52	61	1	1	35	1.16
10565294--10565364	17	4.0	19	78	10	71	60	4	0	35	1.16
10565281--10565356	9	8.4	9	76	5	64	59	3	1	35	1.24
10565273--10565364	35	2.6	36	81	10	102	59	4	1	34	1.24
10565281--10565367	18	4.9	17	76	8	77	58	3	1	36	1.22
10565425--10565517	29	3.3	27	73	18	66	65	4	3	26	1.26
10565494--10565550	19	3.0	19	84	0	69	66	0	1	31	1.02
10567077--10567137	20	3.1	20	79	11	72	36	1	0	62	1.05
10570697--10570735	21	1.9	19	85	10	51	51	0	5	43	1.24
10571763--10571819	19	3.1	19	89	2	80	84	0	15	0	0.63
10571768--10571822	13	4.0	13	85	7	65	83	0	16	0	0.64
10572149--10572187	15	2.4	16	87	12	53	74	0	0	25	0.82
10575722--10575771	20	2.4	21	80	6	57	58	20	4	18	1.55
10578160--10578199	20	2.0	21	90	5	64	70	5	0	25	1.08
10590412--10590698	50	5.6	51	79	11	268	31	11	17	39	1.85
10590412--10590701	101	2.8	98	78	11	305	31	11	17	39	1.85
10591062--10591121	24	2.4	27	78	18	76	78	3	10	8	1.07
10592103--10592128	9	2.9	9	100	0	52	23	0	0	76	0.78
10592113--10592160	24	2.0	24	84	4	62	33	2	0	64	1.05
10592231--10592282	16	3.2	16	79	12	54	65	5	0	28	1.16
10601032--10601082	23	2.3	23	81	15	63	43	1	0	54	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10602309--10602570	141	1.9	141	82	3	339	40	9	12	36	1.77
10602482--10602730	123	2.0	123	94	0	435	39	10	14	34	1.81
10611036--10611095	31	1.9	31	83	6	77	43	1	1	53	1.20
10611662--10611799	73	1.9	74	79	14	160	34	11	12	41	1.79
10611719--10611761	23	1.9	23	81	13	54	39	11	18	30	1.86
10614266--10614304	14	2.7	14	84	4	51	33	0	28	38	1.57
10615862--10615895	16	2.1	16	100	0	68	52	23	5	17	1.66
10616373--10616437	32	2.0	32	85	5	87	69	7	1	21	1.22
10618568--10618657	33	2.8	30	78	13	92	65	4	1	28	1.19
10618585--10618657	29	2.7	27	80	15	80	67	1	1	30	1.08
10619419--10619458	21	1.9	21	94	0	71	30	20	27	22	1.98
10621487--10621535	15	3.2	15	77	13	55	12	4	2	81	0.91
10621491--10621537	23	1.9	25	87	12	71	10	4	2	82	0.88
10621493--10621559	20	3.2	20	79	16	66	16	2	2	77	1.01
10621487--10621544	20	2.9	19	75	17	55	15	3	1	79	0.95
10622770--10622811	19	2.1	20	86	8	59	69	7	9	14	1.37
10622897--10622925	10	2.7	11	89	10	51	24	0	6	68	1.13
10623272--10623377	26	4.2	25	77	12	85	17	0	7	74	1.04
10623273--10623335	15	4.6	15	70	18	57	14	0	7	77	0.97
10623272--10623344	11	7.2	10	69	14	51	13	0	6	79	0.92
10623274--10623352	24	3.2	23	77	13	68	16	0	7	75	1.01
10623349--10623377	12	2.5	12	94	5	51	24	0	6	68	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10623404--10623437	13	2.7	12	90	9	50	79	2	0	17	0.86
10623402--10623442	18	2.3	18	88	12	59	78	2	0	19	0.87
10623594--10623645	23	2.2	25	86	6	72	75	0	3	21	0.97
10623965--10624004	14	2.5	17	84	15	59	67	0	5	27	1.11
10625050--10625104	24	2.3	24	90	6	85	7	3	7	81	0.96
10625177--10625218	19	2.2	19	83	12	50	11	14	0	73	1.09
10628511--10628589	37	2.1	37	88	0	113	44	1	5	49	1.32
10628645--10628778	72	1.9	71	84	1	178	38	8	4	47	1.55
10629792--10629847	29	1.9	29	96	0	103	42	23	10	23	1.85
10635420--10635587	3	62.0	3	68	21	59	38	6	1	54	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117