genome.fa.s101.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  95  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17057035--17057073	21	1.9	20	84	5	51	38	17	20	23	1.93
17067396--17067575	34	5.1	34	74	4	126	30	16	16	37	1.91
17067662--17067866	40	5.1	40	81	5	234	25	17	18	39	1.92
17068106--17068151	13	3.5	13	84	3	56	78	0	2	19	0.86
17068107--17068159	16	3.2	16	79	12	54	77	0	3	18	0.92
17069073--17069114	10	4.2	10	80	19	52	40	2	0	57	1.12
17079624--17079690	3	22.0	3	76	19	59	65	1	1	31	1.10
17079820--17079850	15	2.0	16	93	6	55	48	25	0	25	1.52
17079887--17079974	44	2.0	45	86	6	126	53	20	3	22	1.60
17080069--17080227	15	10.3	15	69	12	54	47	25	2	24	1.64
17080091--17080135	16	2.6	17	82	6	56	44	37	2	15	1.59
17080155--17080273	53	2.2	52	79	10	123	51	24	2	21	1.60
17080186--17080232	15	3.1	16	87	6	71	53	23	0	23	1.47
17080192--17080262	38	1.9	36	88	5	106	53	23	1	21	1.54
17082273--17082376	13	8.2	13	72	14	83	15	9	14	60	1.58
17082269--17082370	25	4.1	24	69	12	89	16	8	13	60	1.57
17082253--17082386	38	3.6	35	76	20	130	15	7	16	60	1.57
17085618--17085698	24	3.2	24	66	10	72	27	4	12	55	1.57
17085618--17085720	51	2.0	51	100	0	206	29	3	13	53	1.58
17086506--17086557	16	3.2	16	77	20	54	78	1	9	9	1.03
17087013--17087071	10	5.8	10	76	7	57	79	0	16	3	0.86
17087013--17087071	15	3.9	15	80	12	66	79	0	16	3	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17088012--17088127	32	3.6	32	71	6	83	37	20	15	26	1.93
17088107--17088186	22	3.6	22	76	3	88	35	23	17	23	1.96
17088439--17088536	28	3.2	32	80	8	98	31	23	14	30	1.94
17088468--17088536	32	2.2	31	86	2	93	31	21	15	30	1.95
17088343--17088517	96	1.9	96	82	8	216	30	25	13	31	1.93
17088683--17089217	37	14.5	36	69	11	190	16	15	17	50	1.78
17088748--17089088	148	2.3	147	79	8	354	15	14	17	52	1.75
17088969--17089143	38	4.7	37	74	8	158	13	13	19	53	1.72
17088896--17089247	111	3.2	111	81	0	389	14	15	18	51	1.76
17088892--17089109	73	3.0	73	76	8	226	14	14	19	51	1.76
17088894--17089162	37	7.3	37	73	3	191	14	14	18	52	1.75
17091066--17091109	3	14.7	3	100	0	88	31	0	0	68	0.90
17091786--17091816	14	2.2	14	94	0	53	58	19	0	22	1.40
17091922--17091976	22	2.5	22	76	5	58	49	32	1	16	1.56
17091932--17092007	17	4.8	17	68	14	63	48	31	2	17	1.60
17092062--17092099	16	2.4	17	82	13	53	55	26	0	18	1.43
17092038--17092091	23	2.3	24	78	9	58	51	27	3	16	1.61
17091952--17092105	15	9.9	16	70	13	72	48	27	2	22	1.64
17095868--17096002	43	3.1	43	81	4	130	28	14	14	42	1.84
17097464--17097502	10	4.0	10	86	6	53	2	10	0	87	0.65
17097469--17097504	15	2.5	15	90	4	56	0	13	0	86	0.58
17097611--17098160	275	2.0	275	93	0	940	44	15	15	24	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17099951--17100001	23	2.3	22	89	3	75	80	13	1	3	0.94
17103402--17103441	19	2.1	19	86	9	55	77	0	10	12	0.99
17103745--17103779	17	2.0	17	88	5	52	77	2	20	0	0.90
17104086--17104137	11	4.5	11	79	11	52	84	1	11	1	0.78
17104086--17104137	23	2.1	25	86	10	72	84	1	11	1	0.78
17104902--17104989	46	1.9	46	85	0	122	32	6	18	42	1.76
17105365--17105456	43	2.2	41	86	5	121	26	9	20	43	1.83
17105620--17106481	99	8.7	98	79	4	795	22	14	21	41	1.89
17105622--17106481	198	4.4	197	81	3	888	22	14	21	41	1.89
17106583--17106765	48	3.8	49	83	4	237	28	13	18	39	1.88
17106903--17106937	10	3.4	11	92	7	56	0	11	0	88	0.51
17106983--17107035	22	2.4	22	87	0	70	28	30	16	24	1.97
17107845--17107889	14	3.2	15	79	20	53	28	0	0	71	0.87
17107845--17107891	13	3.5	13	80	13	51	29	0	0	70	0.88
17114366--17114721	196	1.8	189	87	5	525	42	7	3	46	1.47
17119654--17119714	27	2.1	30	85	8	83	54	1	0	44	1.10
17119801--17119874	21	3.3	22	76	14	64	22	51	12	13	1.74
17119839--17119874	10	3.5	10	92	7	63	27	55	8	8	1.58
17119842--17119875	11	3.2	11	95	4	61	26	55	8	8	1.59
17121246--17121288	8	5.6	8	89	10	72	48	27	0	23	1.51
17121250--17121288	7	5.3	7	82	11	51	51	25	0	23	1.49
17121246--17121288	15	2.9	15	92	0	77	48	27	0	23	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17129515--17129619	41	2.6	41	80	8	126	38	19	13	29	1.89
17129677--17130244	121	4.7	121	94	2	987	32	16	16	35	1.91
17129677--17130244	243	2.3	243	94	1	989	32	16	16	35	1.91
17130411--17130454	22	2.0	22	86	0	61	27	27	18	27	1.98
17130322--17130761	110	4.0	110	83	2	542	21	21	19	38	1.94
17130664--17130839	90	2.0	88	86	4	246	21	18	17	43	1.88
17130536--17131035	200	2.5	198	83	4	643	20	20	18	39	1.92
17130853--17131193	88	3.9	88	88	2	497	20	22	19	37	1.94
17130853--17131193	175	1.9	175	88	1	513	20	22	19	37	1.94
17131344--17131436	3	32.3	3	70	12	52	59	0	0	40	0.98
17131345--17131405	27	2.1	29	85	8	81	52	0	0	47	1.00
17131360--17131436	16	4.2	19	75	12	63	61	0	0	38	0.96
17131409--17131438	8	3.8	8	100	0	60	76	0	0	23	0.78
17131411--17131468	16	3.4	17	83	4	64	81	1	3	13	0.91
17131411--17131471	25	2.4	25	76	17	63	81	1	3	13	0.88
17132929--17132965	15	2.5	15	90	0	56	51	24	2	21	1.61
17132929--17132972	7	5.6	8	79	15	56	50	25	2	22	1.61
17134245--17134285	21	2.0	21	85	9	57	51	2	2	43	1.28
17139179--17139654	95	5.0	95	88	5	694	35	24	13	26	1.93
17139179--17139654	46	10.0	48	87	6	666	35	24	13	26	1.93
17139179--17139654	144	3.3	142	90	3	735	35	24	13	26	1.93
17149043--17149088	5	9.8	5	81	9	53	4	0	13	82	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17150556--17150594	18	2.1	19	85	4	53	76	0	0	23	0.78
17153856--17153908	26	2.0	26	92	0	88	28	18	24	28	1.98
17156390--17156441	26	2.0	26	92	0	86	28	17	25	28	1.97
17155517--17157145	898	1.8	900	91	2	2688	25	22	25	26	2.00
17161046--17161096	26	2.0	26	96	0	93	31	19	25	23	1.98
17158409--17162866	895	5.0	896	86	2	5866	25	24	24	25	2.00
17161939--17161991	26	2.0	26	100	0	106	26	16	26	30	1.97
17163512--17163564	26	2.0	26	85	0	70	28	22	20	28	1.99
17163144--17166193	867	3.4	867	85	6	3864	25	24	24	25	2.00
17167278--17167330	26	2.0	26	89	7	81	26	15	26	32	1.95
17166191--17168300	898	2.4	898	86	2	2817	25	25	25	24	2.00
17168472--17168524	26	2.0	26	96	0	97	28	16	24	30	1.97
17170219--17170271	26	2.0	26	100	0	106	26	20	26	26	1.99
17171871--17171923	26	2.0	26	88	0	79	28	16	24	30	1.97
17172773--17172825	26	2.0	26	100	0	106	26	20	26	26	1.99
17173674--17173726	26	2.0	26	92	0	88	26	20	26	26	1.99
17174568--17174619	26	2.0	25	88	3	77	28	19	23	28	1.98
17170279--17177312	889	7.9	886	83	6	7933	25	23	24	26	2.00
17177423--17177452	11	2.7	11	100	0	60	20	26	30	23	1.98
17179371--17179423	26	2.0	26	96	0	97	26	18	26	28	1.98
17180854--17180913	26	2.4	26	91	5	97	25	20	28	26	1.99
17179725--17181681	903	2.2	902	87	1	2794	24	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17182465--17182517	26	2.0	26	96	0	97	28	20	24	26	1.99
17182670--17184770	710	2.9	709	88	1	3064	26	23	23	26	2.00
17186047--17186098	26	2.0	26	100	0	104	26	19	26	26	1.99
17186345--17186374	15	2.0	15	100	0	60	26	33	33	6	1.83
17186541--17186592	26	2.0	26	85	10	72	28	17	23	30	1.97
17187444--17187496	26	2.0	26	92	0	88	26	16	26	30	1.97
17186147--17191918	851	6.5	897	83	6	6880	25	24	24	25	2.00
17188348--17188400	26	2.0	26	96	0	97	28	20	24	26	1.99
17190088--17190140	26	2.0	26	96	0	97	28	20	24	26	1.99
17189233--17191917	895	3.0	889	84	6	3349	24	24	25	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117