genome.fa.s101.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  91  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16420942--16421005	33	1.9	33	93	0	110	50	9	14	26	1.73
16431320--16431372	27	2.0	27	84	0	70	56	0	39	3	1.17
16433996--16434064	35	2.0	35	94	0	120	46	4	0	49	1.21
16434032--16434083	24	2.2	24	89	0	77	34	1	3	59	1.27
16434821--16434888	34	2.0	35	94	2	120	50	1	5	42	1.35
16434821--16434879	18	3.3	18	74	11	68	49	0	5	45	1.24
16434936--16435004	32	2.1	33	83	8	86	60	1	2	34	1.20
16435031--16435064	15	2.2	16	89	5	52	61	0	0	38	0.96
16435849--16435884	18	2.1	18	89	5	56	41	0	0	58	0.98
16436721--16436803	24	3.5	24	75	3	96	54	1	4	39	1.30
16438276--16438309	16	2.1	17	88	5	52	55	0	0	44	0.99
16438396--16438497	18	5.7	18	76	14	104	53	1	0	43	1.18
16438401--16438530	31	4.0	31	72	21	106	51	3	0	43	1.25
16438433--16438530	23	4.1	23	68	12	81	51	5	1	42	1.31
16438396--16438530	72	1.9	72	89	3	209	52	3	0	42	1.24
16438673--16438706	15	2.3	15	89	0	50	41	0	2	55	1.15
16438688--16438764	19	4.3	18	69	12	52	45	1	0	53	1.08
16439908--16439995	38	2.3	38	98	0	167	43	2	1	53	1.20
16439944--16440009	31	2.1	31	83	10	82	48	1	0	50	1.10
16439919--16439983	20	3.3	20	69	16	64	43	3	1	52	1.26
16439908--16440013	38	2.8	38	88	5	117	48	1	0	49	1.18
16440022--16440078	25	2.3	24	82	8	71	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16442025--16442062	20	2.0	18	90	10	58	68	0	0	31	0.90
16445044--16445134	43	2.1	43	91	0	146	32	10	5	50	1.61
16445262--16445286	13	1.9	13	100	0	50	40	36	0	24	1.55
16446498--16446564	15	4.5	15	73	3	55	70	14	1	13	1.25
16446525--16446600	6	12.8	6	87	2	73	71	18	0	10	1.14
16446545--16446591	3	15.7	3	90	0	76	68	27	0	4	1.08
16447996--16448136	60	2.3	59	84	7	185	36	9	9	43	1.72
16448092--16448259	63	2.7	61	80	8	171	45	7	8	38	1.63
16448404--16448762	63	5.8	61	73	11	246	43	6	10	38	1.66
16449304--16449351	23	2.1	23	88	7	71	81	4	14	0	0.84
16460056--16460099	4	11.0	4	90	0	70	29	0	25	45	1.54
16460351--16460375	2	12.5	2	100	0	50	52	0	0	48	1.00
16462136--16462168	13	2.4	14	90	5	50	57	6	9	27	1.53
16465835--16465873	19	2.0	21	85	10	55	43	0	2	53	1.14
16465793--16465856	26	2.5	24	80	14	83	48	3	0	48	1.17
16472185--16472234	15	3.4	15	71	13	50	28	8	14	50	1.70
16472667--16472696	14	2.1	14	93	0	51	53	6	0	40	1.27
16473023--16473052	16	1.9	15	93	6	51	33	6	0	60	1.23
16474033--16474201	18	9.1	19	71	20	83	24	4	2	69	1.18
16474055--16474212	6	27.8	6	74	22	114	25	3	1	68	1.13
16474054--16474229	24	7.5	22	74	20	105	25	4	1	68	1.17
16474760--16474798	19	2.1	19	90	0	60	35	7	10	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16478974--16479002	13	2.1	14	93	6	51	17	13	34	34	1.89
16483289--16483341	25	2.1	25	85	3	70	47	5	0	47	1.26
16483378--16483402	13	1.9	13	100	0	50	20	0	0	80	0.72
16483407--16483454	5	10.2	5	77	20	50	79	2	2	16	0.93
16483409--16483456	9	5.4	8	79	20	51	81	2	2	14	0.88
16484236--16484293	27	2.2	26	84	3	80	72	0	5	22	1.04
16484220--16484324	47	2.3	45	78	14	108	70	0	5	23	1.08
16484254--16484359	18	6.1	17	72	17	83	73	1	2	21	1.06
16484252--16484359	34	3.2	32	79	11	92	73	1	2	22	1.06
16484252--16484350	35	2.7	36	77	16	107	71	2	3	23	1.10
16484252--16484364	12	10.1	11	69	21	58	73	1	2	22	1.05
16484252--16484364	44	2.5	44	78	8	122	73	1	2	22	1.05
16484237--16484363	19	6.9	18	72	17	77	72	1	3	22	1.10
16487280--16487327	13	3.3	15	77	16	57	79	2	16	2	0.93
16488405--16488495	39	2.3	39	84	0	110	28	3	18	49	1.63
16488448--16488653	39	5.3	38	76	6	153	26	9	16	47	1.77
16488884--16489003	6	20.3	6	71	11	52	23	5	1	70	1.16
16488854--16488935	30	2.8	29	80	14	78	21	1	4	71	1.11
16496241--16496298	29	2.1	27	83	6	71	58	5	3	32	1.37
16497521--16497565	17	2.6	17	86	10	65	51	0	2	46	1.13
16497521--16497572	17	3.0	18	86	5	63	48	0	3	48	1.20
16502139--16502181	14	3.2	13	83	12	52	79	0	16	4	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16502290--16502320	15	2.0	16	93	6	55	74	0	19	6	1.03
16502283--16502330	26	1.9	24	83	8	60	72	0	20	6	1.05
16504934--16505013	7	10.0	8	76	18	53	78	0	15	6	0.93
16504953--16505015	10	6.2	10	78	14	67	85	0	11	3	0.70
16504936--16505013	30	2.5	31	79	8	88	80	0	14	5	0.87
16504947--16505032	18	5.1	18	76	15	85	80	0	15	4	0.87
16504936--16505015	27	2.9	27	81	10	90	81	0	13	5	0.85
16504953--16505017	9	6.9	9	79	11	60	84	0	12	3	0.73
16504947--16505013	7	9.7	7	79	12	68	83	0	11	4	0.78
16506328--16506434	43	2.4	44	76	13	112	39	8	14	38	1.76
16506699--16506778	42	1.9	42	86	0	115	28	10	18	42	1.83
16506755--16507132	43	8.8	44	79	7	380	22	14	21	42	1.88
16506764--16507132	129	2.8	131	80	7	423	22	14	20	42	1.88
16507341--16507423	3	25.7	3	77	13	60	32	1	1	65	1.08
16507337--16507471	10	13.2	10	71	15	80	32	2	2	62	1.23
16507366--16507479	48	2.5	45	84	13	144	34	4	1	59	1.27
16507352--16507479	22	5.5	24	79	13	128	32	3	2	60	1.27
16507754--16507782	13	2.1	14	93	6	51	20	0	3	75	0.94
16508330--16508605	58	4.8	58	83	10	323	43	5	12	38	1.65
16510351--16510401	20	2.5	21	83	3	59	50	1	1	45	1.24
16512299--16512462	81	2.0	81	95	0	292	35	20	19	23	1.95
16513070--16513104	14	2.4	15	85	9	54	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16515575--16515618	23	1.9	23	81	9	54	56	0	0	43	0.99
16519815--16519863	16	3.2	16	86	8	59	6	4	10	79	1.03
16519815--16519879	14	4.5	14	81	9	60	7	3	10	78	1.06
16519874--16519915	14	2.9	14	76	16	50	33	0	0	66	0.92
16520013--16520052	21	2.0	20	85	14	55	35	7	12	45	1.70
16520055--16520112	11	5.2	11	79	8	55	32	1	3	62	1.22
16520008--16520084	18	3.9	18	71	23	50	31	6	11	50	1.64
16520077--16520111	8	4.4	8	89	10	54	37	0	0	62	0.95
16520055--16520112	3	19.7	3	74	22	52	32	1	3	62	1.22
16523448--16523488	22	2.0	22	85	9	59	58	12	17	12	1.63
16525008--16525045	19	2.0	20	94	5	69	89	0	7	2	0.57
16525006--16525045	21	1.9	21	94	0	71	90	0	7	2	0.55
16525006--16525051	21	2.2	21	88	0	65	86	0	10	2	0.64
16526011--16526052	14	3.1	14	82	6	59	45	14	9	30	1.77
16526039--16526136	20	5.2	20	70	14	64	47	14	6	31	1.68
16526147--16526192	14	2.8	17	78	21	62	52	19	4	23	1.64
16526414--16526459	23	2.0	23	87	4	67	60	8	6	23	1.49
16526277--16526514	131	1.8	127	81	6	289	54	10	6	29	1.58
16526368--16526496	55	2.4	54	84	3	163	53	10	6	29	1.60
16526475--16526584	24	4.6	24	76	10	118	55	10	3	30	1.50
16526512--16526628	45	2.5	45	83	6	128	58	9	1	29	1.39
16526542--16526635	21	4.4	21	74	13	75	60	8	1	29	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16527308--16527343	13	2.7	13	91	4	54	69	8	0	22	1.15
16527720--16528095	127	3.0	125	80	3	439	40	20	10	27	1.86
16527718--16528095	85	4.5	85	77	4	354	40	21	10	27	1.86
16527720--16528095	169	2.2	169	82	3	472	40	20	10	27	1.86
16527720--16528095	42	8.9	42	80	4	362	40	20	10	27	1.86
16528266--16528290	13	1.9	13	100	0	50	40	12	24	24	1.88
16529003--16529049	21	2.2	21	85	7	60	8	12	0	78	0.95
16535161--16535322	22	7.2	22	67	12	62	37	8	15	39	1.77
16535240--16535333	24	4.0	24	76	8	104	31	5	14	47	1.67
16535132--16535342	45	4.7	45	78	8	223	36	7	16	40	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117