genome.fa.s101.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  23  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2879323--2879376	21	2.6	22	75	19	62	37	0	0	62	0.95
2879688--2879727	21	2.0	20	85	5	53	22	40	2	35	1.68
2880100--2880138	17	2.3	17	91	8	62	53	0	0	46	1.00
2880085--2880141	12	5.2	11	79	14	64	57	0	0	42	0.98
2880847--2880909	13	4.9	13	75	16	51	80	6	0	12	0.88
2880839--2880911	20	3.8	18	79	15	76	80	6	0	12	0.89
2880841--2880902	33	1.9	31	93	6	106	79	6	0	14	0.93
2880807--2880894	24	3.8	22	69	19	63	76	3	0	20	0.93
2881152--2881182	15	2.1	15	94	5	55	87	12	0	0	0.55
2881232--2881284	22	2.5	21	84	9	63	71	5	11	11	1.29
2882337--2882387	21	2.3	23	80	10	61	45	21	0	33	1.52
2884159--2884198	20	2.0	21	90	5	64	67	2	10	20	1.31
2885585--2885643	20	3.0	20	94	0	100	18	30	28	22	1.97
2885680--2885715	7	5.1	7	87	12	56	16	0	0	83	0.65
2885680--2885715	13	2.5	15	86	13	58	16	0	0	83	0.65
2886285--2886357	31	2.4	31	86	4	103	23	26	23	27	2.00
2886422--2886463	19	2.2	19	86	0	57	23	30	23	21	1.99
2886699--2886735	13	2.7	15	80	20	53	8	43	24	24	1.81
2886822--2887447	321	1.9	323	97	1	1186	27	14	17	40	1.88
2886822--2887447	161	3.9	161	98	0	1184	27	14	17	40	1.88
2890731--2890764	1	34.0	1	93	0	59	97	0	2	0	0.19
2891163--2891198	10	3.8	9	89	10	54	83	0	13	2	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2891138--2891206	19	3.7	20	78	16	76	75	0	17	7	1.02
2892456--2893097	42	15.5	41	90	4	952	22	17	25	34	1.95
2892456--2893097	125	5.2	124	90	5	974	22	17	25	34	1.95
2893106--2893208	10	10.6	9	80	14	107	85	8	0	5	0.74
2893105--2893213	20	5.5	19	87	8	139	85	8	0	6	0.75
2893104--2893201	1	98.0	1	76	0	79	86	8	0	5	0.69
2893384--2893437	24	2.2	23	81	18	65	25	5	3	64	1.32
2893488--2893513	3	8.7	3	100	0	52	30	0	0	69	0.89
2894092--2894129	20	1.9	20	100	0	76	44	28	21	5	1.73
2894438--2894479	14	3.1	15	80	19	56	7	42	21	28	1.79
2894438--2894474	13	2.7	14	80	20	51	8	43	24	24	1.81
2894583--2895025	151	2.9	152	93	1	764	30	13	17	37	1.89
2895388--2895413	12	2.2	12	100	0	52	61	0	0	38	0.96
2900397--2900443	21	2.6	18	78	21	53	48	4	0	46	1.21
2900463--2900518	23	2.4	23	93	3	94	41	3	0	55	1.17
2900886--2900929	20	2.2	20	92	4	72	38	0	0	61	0.96
2900958--2901001	22	1.9	24	90	9	74	61	0	2	36	1.09
2904133--2904178	3	15.3	3	100	0	92	34	0	0	65	0.93
2905112--2905304	100	1.9	98	82	6	237	51	8	7	32	1.60
2908941--2909319	200	1.9	200	98	1	733	40	7	5	45	1.57
2918735--2918951	108	2.0	108	96	0	398	31	37	6	24	1.81
2919090--2919246	52	3.0	53	85	5	189	25	24	9	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2922399--2923076	259	2.6	257	79	6	652	42	16	12	27	1.85
2923599--2923655	26	2.2	26	84	6	71	56	1	1	40	1.20
2924670--2924750	15	5.5	15	73	19	55	54	0	0	45	0.99
2924699--2924792	18	5.2	18	74	16	72	50	3	0	46	1.17
2924706--2924880	23	8.4	22	71	20	108	54	2	0	41	1.19
2924706--2924880	41	4.2	40	78	12	167	54	2	0	41	1.19
2924714--2924795	18	4.4	18	76	16	78	51	3	0	45	1.19
2924817--2924887	38	1.9	35	86	8	97	60	0	1	38	1.06
2924904--2924983	18	4.6	18	78	15	71	42	0	2	55	1.13
2924906--2925025	18	6.8	16	72	17	64	44	0	1	53	1.16
2925106--2925150	14	3.1	14	90	9	65	46	6	2	44	1.42
2926575--2926609	18	2.0	18	94	5	63	28	11	0	60	1.32
2928631--2929044	59	7.0	58	82	7	419	46	6	12	35	1.68
2928624--2928995	177	2.1	178	84	6	468	48	6	10	34	1.64
2932476--2932511	18	1.9	19	88	5	56	80	0	16	2	0.83
2932878--2932943	22	3.0	21	75	20	64	75	0	18	6	1.00
2932869--2932937	18	3.8	18	80	16	72	73	0	20	5	1.03
2932878--2932974	40	2.3	42	81	13	103	75	0	16	8	1.03
2933196--2933229	15	2.4	14	90	5	50	32	2	8	55	1.45
2934058--2934514	34	13.4	34	76	5	341	33	17	12	37	1.87
2934285--2934511	17	13.3	17	64	10	54	32	18	11	37	1.87
2934507--2934571	34	1.9	34	83	0	85	33	18	12	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2934773--2934944	86	2.0	85	84	3	220	23	19	12	43	1.86
2936065--2936411	59	5.9	58	80	6	346	44	5	13	36	1.68
2936084--2936411	177	1.9	177	81	8	409	44	5	13	35	1.68
2937523--2937549	12	2.2	12	100	0	54	92	0	7	0	0.38
2938110--2938201	44	2.0	46	83	4	116	44	1	4	50	1.29
2938181--2938281	23	4.0	24	76	17	80	60	1	2	34	1.23
2938191--2938223	17	1.9	17	93	0	57	69	0	0	30	0.88
2938375--2938487	59	1.9	59	96	0	208	39	5	2	52	1.38
2945003--2945225	63	3.5	63	87	3	306	34	19	17	27	1.95
2948473--2948531	25	2.3	27	80	11	70	66	5	1	27	1.22
2949049--2949082	8	4.0	8	85	14	50	82	2	0	14	0.79
2955468--2955501	17	2.0	17	88	11	52	58	0	0	41	0.98
2956248--2956372	66	1.9	67	91	1	207	51	7	7	34	1.57
2956348--2956377	15	1.9	16	93	6	53	56	0	10	33	1.32
2962227--2962269	21	2.0	21	86	9	59	4	6	4	83	0.89
2963922--2963966	24	1.9	23	82	13	56	35	11	2	51	1.50
2964566--2964595	15	1.9	16	93	6	53	90	0	10	0	0.47
2965264--2965343	29	3.0	28	77	12	71	57	1	6	35	1.32
2971408--2971562	63	2.5	63	87	2	204	35	20	17	27	1.94
2975900--2975942	9	4.9	9	78	16	54	83	2	0	13	0.74
2977413--2977442	15	1.9	16	93	6	53	56	0	10	33	1.32
2980182--2980221	19	2.1	19	95	0	71	37	17	12	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2980686--2980715	15	1.9	16	93	6	53	56	0	10	33	1.32
2982237--2982711	252	1.9	250	80	9	557	40	17	15	26	1.89
2982182--2982767	251	2.3	252	77	9	582	42	16	14	26	1.87
2986434--2987008	58	9.7	58	85	6	730	34	13	7	44	1.73
2986434--2987009	118	4.9	117	88	4	748	34	13	7	44	1.73
2987026--2987183	5	31.6	5	66	24	59	74	4	4	17	1.15
2987026--2987101	18	3.9	18	74	24	66	78	2	5	13	1.02
2987026--2987115	24	3.8	23	77	13	85	77	2	6	13	1.05
2987217--2987248	12	2.7	12	100	0	64	12	28	43	15	1.83
2987990--2988016	4	6.8	4	100	0	54	77	0	0	22	0.76
2988100--2988246	3	48.7	3	73	17	71	66	4	1	27	1.18
2988095--2988294	20	9.9	20	67	21	71	69	3	1	25	1.13
2988225--2988294	6	11.2	6	76	19	63	75	1	1	21	0.96
2988115--2988294	46	3.7	47	73	18	122	68	3	1	26	1.16
2988231--2988294	24	2.8	24	77	13	71	76	1	1	20	0.95
2993228--2993384	52	3.0	52	85	1	190	26	24	9	39	1.86
2993409--2993450	11	3.8	11	83	0	57	50	23	0	26	1.50
3003431--3003476	22	2.1	22	100	0	92	45	4	19	30	1.70
3006778--3006820	19	2.4	18	88	7	61	32	0	0	67	0.91
3008419--3008446	2	14.0	2	100	0	56	50	0	0	50	1.00
3009952--3010005	27	2.0	27	92	0	90	48	16	12	22	1.80
3011483--3011632	62	2.4	63	79	6	153	43	12	8	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3011578--3011778	63	3.2	63	77	10	171	38	12	10	37	1.79
3011632--3011782	63	2.4	63	80	11	177	35	12	12	39	1.81
3011662--3011807	62	2.4	62	80	10	156	39	16	9	34	1.81
3012313--3012491	63	2.8	62	80	8	186	42	14	13	29	1.84
3012756--3012793	15	2.4	16	95	4	69	55	0	0	44	0.99
3012891--3012933	23	1.9	22	86	13	61	46	0	6	46	1.30
3018006--3018058	27	2.0	27	88	0	79	32	13	5	49	1.65
3023506--3023578	38	1.9	38	82	0	92	30	17	20	31	1.96
3032885--3032924	19	2.1	19	90	0	62	35	17	15	32	1.91
3035912--3035957	22	2.1	22	84	8	58	36	4	0	58	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117