genome.fa.s101.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  52  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9673474--9673608	20	6.5	20	75	9	110	30	5	11	52	1.60
9673603--9673670	21	3.3	21	69	19	61	32	4	8	54	1.51
9673605--9673881	41	6.8	41	83	4	319	31	6	10	52	1.60
9674201--9674234	18	1.9	17	88	5	50	44	5	0	50	1.26
9674219--9674280	26	2.3	26	78	13	63	38	3	9	48	1.52
9674747--9674790	20	2.2	20	84	12	54	54	25	4	15	1.60
9675957--9675990	6	5.7	6	96	0	59	38	50	0	11	1.39
9675951--9676000	18	2.8	18	82	14	68	36	50	0	14	1.43
9679519--9679558	18	2.2	18	100	0	80	5	10	40	45	1.60
9684020--9684060	20	2.2	19	83	16	50	7	4	7	80	1.02
9684016--9684089	22	3.5	22	68	14	57	6	10	5	77	1.13
9684673--9684712	19	2.1	19	86	13	55	32	0	2	65	1.06
9686854--9686915	27	2.3	26	81	10	72	51	6	0	41	1.27
9689215--9689306	29	3.1	29	77	11	89	52	0	0	47	1.00
9689261--9689303	18	2.4	18	85	11	61	46	0	0	53	1.00
9689266--9689310	22	2.0	22	84	16	58	44	0	0	55	0.99
9689306--9689363	28	2.0	29	83	3	73	46	3	5	44	1.42
9689927--9689976	23	2.2	23	82	7	57	38	4	0	58	1.17
9689925--9689970	23	2.0	23	87	8	67	36	4	0	58	1.18
9694611--9694647	2	19.5	2	89	10	60	45	0	0	54	1.00
9694611--9694645	15	2.3	15	100	0	70	45	0	0	54	0.99
9694842--9694881	19	2.1	19	86	9	55	47	2	0	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9702820--9702856	20	1.9	20	88	5	58	70	0	0	29	0.88
9706489--9706527	2	20.0	2	92	5	62	51	0	2	46	1.14
9708408--9708440	17	1.9	17	93	0	57	27	6	33	33	1.81
9709507--9709719	111	1.9	111	95	1	383	23	15	20	39	1.91
9712436--9712477	20	2.1	20	86	0	57	38	9	9	42	1.70
9712642--9712696	26	2.2	25	83	3	65	43	1	1	52	1.22
9712634--9712695	25	2.5	25	76	7	65	43	1	3	51	1.27
9712740--9712780	21	1.9	21	90	5	64	41	4	0	53	1.22
9712833--9712878	24	2.0	24	86	4	67	23	0	8	67	1.18
9713206--9713250	19	2.4	19	82	10	56	66	4	0	28	1.11
9713209--9713258	19	2.7	19	76	14	50	68	4	2	26	1.18
9713762--9713811	20	2.4	21	76	3	57	48	18	4	30	1.66
9716410--9716443	13	2.6	13	85	0	50	58	14	2	23	1.50
9726724--9726786	18	3.4	18	72	27	60	41	1	3	53	1.26
9726724--9726787	20	3.4	19	74	25	64	42	1	3	53	1.26
9739795--9739828	14	2.3	15	90	5	52	73	17	5	2	1.16
9740937--9740969	17	1.9	17	93	0	57	48	27	0	24	1.51
9740957--9740992	15	2.4	15	100	0	72	61	16	0	22	1.35
9740931--9741074	32	4.5	33	72	8	100	51	28	1	18	1.55
9740931--9741070	16	8.8	16	78	8	90	51	28	1	18	1.55
9741103--9741138	16	2.3	16	90	4	56	52	25	0	22	1.47
9741100--9741155	14	3.9	14	81	9	67	51	28	0	19	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9741157--9741210	14	3.7	14	75	18	56	53	24	0	22	1.46
9741156--9741228	30	2.4	30	86	8	96	49	24	0	26	1.51
9750805--9750873	20	3.2	21	71	8	59	69	2	5	21	1.23
9751179--9751224	17	2.6	18	86	3	58	76	0	6	17	1.00
9759749--9759886	36	3.8	37	75	6	113	28	11	14	45	1.80
9759786--9760063	137	2.0	137	100	0	556	32	10	16	40	1.82
9766429--9766482	28	2.0	27	88	3	81	40	1	3	53	1.29
9767345--9767518	85	2.0	86	98	1	341	53	6	3	36	1.45
9772970--9773004	14	2.4	15	80	9	54	45	0	5	48	1.26
9781877--9781914	20	1.9	20	88	0	58	63	0	5	31	1.17
9785354--9785418	24	2.7	25	81	9	64	56	3	3	36	1.30
9785776--9785830	20	2.7	20	77	8	58	61	0	0	38	0.96
9785784--9785820	19	2.0	20	89	10	60	62	0	0	37	0.96
9785818--9785871	23	2.4	23	93	3	92	44	0	9	46	1.35
9794525--9795220	228	3.1	228	86	1	914	30	14	31	23	1.95
9794561--9795132	114	5.0	114	65	11	346	30	14	30	23	1.95
9795386--9795503	33	3.6	33	74	11	107	27	7	44	20	1.79
9795482--9795593	30	3.7	30	81	2	127	23	4	50	21	1.66
9795481--9795593	60	1.9	60	83	3	147	23	4	50	21	1.67
9801403--9801434	12	2.7	12	100	0	64	62	9	0	28	1.26
9801654--9801698	22	2.0	22	86	4	63	37	0	0	62	0.96
9801771--9801812	21	2.0	21	86	9	59	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9801772--9801814	6	7.3	6	87	10	54	72	0	0	27	0.85
9805125--9805181	30	1.9	30	85	7	80	31	1	5	61	1.28
9805156--9805222	30	2.2	31	86	2	91	35	7	1	55	1.37
9805168--9805232	30	2.1	30	82	2	76	36	12	1	49	1.50
9807930--9807971	3	14.0	3	100	0	84	33	0	0	66	0.92
9822656--9822776	6	19.7	6	68	18	54	19	3	3	74	1.10
9822717--9822765	13	3.6	14	76	15	50	18	4	2	75	1.06
9822746--9822784	15	2.6	16	88	8	55	25	2	2	69	1.14
9823429--9823463	14	2.5	14	86	13	54	65	0	34	0	0.93
9823763--9823859	6	16.5	6	70	21	64	14	4	2	79	0.97
9823763--9823859	18	5.6	16	76	12	77	14	4	2	79	0.97
9823763--9823818	11	5.2	10	81	14	67	12	3	1	82	0.88
9823777--9823859	36	2.3	36	83	6	107	14	3	2	79	0.97
9823763--9823860	29	3.4	27	75	19	81	14	5	2	78	1.01
9826404--9826467	9	6.9	9	75	18	51	84	0	6	9	0.78
9826435--9826493	19	3.2	19	88	4	86	79	0	10	10	0.93
9826413--9826504	18	5.2	18	74	20	70	78	0	13	8	0.97
9827057--9827118	31	2.1	29	82	11	72	35	8	25	30	1.85
9827085--9827247	79	2.1	79	82	0	191	39	7	20	31	1.82
9827659--9827717	21	2.8	21	92	0	91	40	11	16	30	1.85
9828161--9828274	37	2.9	41	76	11	128	21	13	17	48	1.81
9828914--9828947	17	2.0	17	88	11	52	58	0	41	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9829813--9829918	56	1.9	55	82	5	133	54	7	11	26	1.62
9835995--9836026	2	16.0	2	100	0	64	50	0	0	50	1.00
9836834--9836881	21	2.3	21	100	0	96	56	4	6	33	1.44
9843044--9843170	65	1.9	66	87	1	184	40	16	27	15	1.89
9843280--9844196	308	3.0	306	87	6	1251	29	14	20	34	1.93
9844134--9844739	312	1.9	312	98	0	1185	30	16	24	29	1.96
9846361--9846407	23	2.0	24	87	4	69	34	0	0	65	0.93
9849568--9849633	34	1.9	35	87	9	100	45	0	16	37	1.48
9850139--9850361	73	3.1	73	78	13	230	49	3	7	39	1.46
9850145--9850338	47	4.1	45	68	19	117	49	3	7	40	1.46
9850368--9850409	19	2.2	20	86	4	59	45	2	2	50	1.27
9850443--9850476	16	2.1	16	88	0	50	47	5	0	47	1.26
9851122--9851164	21	2.1	21	95	4	79	53	0	0	46	1.00
9851122--9851170	18	2.5	20	87	12	68	48	0	0	51	1.00
9852635--9852672	20	1.9	20	94	0	67	65	5	5	23	1.34
9856659--9856723	13	4.3	15	74	16	55	52	0	1	46	1.10
9856631--9856723	45	2.0	46	87	2	134	51	0	2	46	1.13
9858201--9858237	19	1.9	19	88	0	56	45	10	0	43	1.39
9859495--9859530	2	18.0	2	100	0	72	50	0	0	50	1.00
9869005--9870190	358	3.3	357	85	3	1502	36	14	12	36	1.84
9868997--9870190	357	3.3	355	84	3	1565	36	14	12	36	1.84
9870823--9870978	85	1.8	85	82	5	199	26	11	21	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9875913--9876081	84	2.0	83	85	7	227	37	14	10	37	1.81
9876624--9877321	130	5.4	130	81	5	731	40	14	6	38	1.71
9876604--9877321	260	2.8	257	82	4	838	40	14	6	38	1.71
9879654--9879732	33	2.4	33	84	0	104	44	26	3	25	1.71
9900483--9900507	2	12.5	2	100	0	50	48	0	0	52	1.00
9901023--9901068	20	2.2	20	85	14	58	36	0	0	63	0.95
9906878--9906943	28	2.3	27	82	7	78	21	7	4	66	1.35
9906850--9906977	58	2.2	59	80	9	138	22	6	4	66	1.33
9907781--9907827	24	1.9	25	82	4	60	6	8	4	80	1.00
9908770--9908824	27	2.0	28	89	3	85	27	1	7	63	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117