genome.fa.s101.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  74  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13470820--13470858	20	2.1	19	85	9	53	35	5	5	53	1.45
13470930--13473679	180	15.4	177	72	10	959	39	8	10	41	1.70
13471057--13471748	361	1.9	361	80	3	793	40	9	9	41	1.69
13470932--13473679	181	15.4	179	73	9	1071	39	8	10	41	1.70
13473661--13478280	181	25.7	180	75	9	3026	40	7	9	42	1.65
13472820--13474544	870	2.0	861	81	5	2012	40	7	9	42	1.66
13473661--13478251	360	12.8	357	74	11	2848	40	7	9	42	1.65
13473670--13477075	541	6.3	541	74	10	1465	40	7	8	42	1.65
13476871--13476906	16	2.1	17	90	10	56	47	5	5	41	1.50
13476921--13478280	177	7.5	184	75	9	759	40	7	9	42	1.66
13477216--13478270	552	1.9	547	81	5	1277	40	7	9	42	1.66
13478180--13478378	110	1.8	109	82	5	258	36	5	9	48	1.58
13478482--13479074	182	3.3	176	78	8	554	39	8	9	42	1.69
13479076--13479115	21	1.9	21	94	0	71	22	10	5	62	1.46
13479173--13480181	180	5.6	180	76	6	846	42	8	7	40	1.65
13480242--13481806	181	8.7	181	75	5	1152	40	7	9	41	1.67
13480233--13481789	542	2.9	534	78	7	1479	40	7	9	41	1.67
13480242--13481789	361	4.3	358	76	6	1250	40	7	9	41	1.67
13481793--13482711	183	5.1	180	74	7	749	37	9	10	42	1.70
13482744--13483580	180	4.6	180	80	6	816	42	9	7	40	1.67
13482749--13483567	360	2.3	359	80	6	949	42	9	7	40	1.65
13483707--13484822	181	6.3	181	74	7	834	40	8	10	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13486292--13489990	181	20.6	181	76	6	2834	40	8	10	40	1.70
13486276--13495208	362	24.3	361	69	12	2811	40	8	10	40	1.69
13487515--13487838	176	1.8	175	83	5	431	43	8	9	38	1.69
13488283--13488319	18	2.0	19	94	5	67	43	8	16	32	1.77
13488816--13488854	19	1.9	20	85	15	53	43	5	15	35	1.69
13489886--13490098	107	2.0	107	84	9	283	46	7	11	33	1.70
13489998--13491351	181	7.6	179	73	9	591	41	8	10	39	1.70
13489354--13490632	644	2.0	644	82	5	1546	42	8	10	39	1.70
13491980--13492034	26	2.2	25	84	12	69	29	10	0	60	1.31
13491796--13492168	206	1.8	206	83	6	506	37	10	8	43	1.69
13492002--13495208	181	17.7	178	73	9	1852	40	8	9	41	1.68
13491698--13495190	926	3.8	919	75	9	2223	40	8	9	41	1.68
13492933--13495208	542	4.2	539	77	7	1572	41	8	9	40	1.67
13496377--13498984	181	14.6	181	75	5	1876	42	10	8	39	1.69
13497521--13497553	18	1.9	17	88	11	50	42	6	3	48	1.43
13496377--13499498	535	5.9	533	74	8	1614	42	10	8	39	1.69
13499396--13500003	321	1.9	324	80	5	712	42	9	7	40	1.65
13499790--13499822	18	1.9	17	88	11	50	42	6	3	48	1.43
13500006--13500334	165	2.0	166	85	6	445	38	9	8	43	1.67
13500247--13500595	180	1.9	180	83	2	450	42	9	9	38	1.69
13500177--13500595	181	2.3	181	81	4	454	42	8	8	39	1.66
13500501--13500764	145	1.8	145	83	7	349	42	9	6	41	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13500501--13500801	145	2.1	144	80	9	328	41	9	7	41	1.66
13500182--13501128	505	1.9	504	80	5	1137	42	9	7	41	1.64
13500635--13502027	181	7.8	179	75	7	1092	42	9	8	40	1.67
13500688--13502027	350	3.7	356	75	8	1014	42	9	8	40	1.67
13503979--13504481	180	2.8	180	77	11	440	40	8	9	41	1.68
13502080--13506583	181	25.2	180	74	7	2927	39	8	10	41	1.69
13505122--13505440	164	2.0	161	79	9	342	40	7	9	43	1.65
13502078--13517524	357	43.4	354	73	10	7839	40	8	10	41	1.68
13506595--13517524	181	61.4	181	72	10	4468	40	8	9	41	1.68
13509321--13517524	359	22.9	356	73	10	4519	40	8	9	41	1.68
13510262--13510737	169	2.7	169	78	6	384	40	9	9	40	1.69
13515017--13515049	18	1.9	17	88	11	50	48	6	6	39	1.53
13510581--13513254	180	14.9	179	75	8	1723	40	8	9	40	1.68
13509338--13517520	539	15.3	533	73	11	3000	40	8	9	41	1.68
13517726--13517769	21	2.0	22	82	4	54	43	4	4	47	1.44
13517866--13520111	180	12.6	181	76	6	1663	40	8	9	41	1.69
13517866--13520138	361	6.4	359	75	8	1602	40	8	9	41	1.69
13519004--13520061	529	2.0	526	82	4	1263	40	9	9	40	1.70
13520147--13520660	181	2.9	176	78	4	503	39	7	10	42	1.67
13520662--13521628	182	5.4	180	75	8	806	38	8	10	41	1.71
13520850--13521628	355	2.2	360	78	6	787	38	8	11	41	1.72
13521833--13521897	18	3.3	19	73	16	53	15	6	6	72	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13522230--13522265	18	2.0	18	94	0	63	13	13	5	66	1.41
13522438--13522486	25	2.0	25	84	8	64	6	8	6	79	1.05
13522776--13522818	17	2.4	18	78	21	54	20	2	4	72	1.14
13522776--13522839	19	3.4	18	74	16	58	17	4	3	75	1.11
13523102--13523183	34	2.3	37	85	8	107	12	4	4	78	1.07
13523140--13523188	23	2.1	24	81	11	57	10	4	4	81	0.95
13523135--13523188	18	3.2	17	76	12	58	9	3	5	81	0.97
13523125--13523207	34	2.4	35	84	10	107	12	4	4	78	1.07
13523675--13523708	18	1.9	18	94	5	61	14	14	5	64	1.46
13523787--13523837	19	2.6	19	75	9	50	15	7	5	70	1.30
13524884--13524945	15	3.9	15	78	16	54	19	8	3	69	1.28
13524971--13525029	26	2.3	25	82	8	75	13	5	3	77	1.05
13524973--13525029	8	6.9	8	80	7	60	12	5	3	78	1.03
13525620--13525650	16	1.9	16	93	0	53	3	3	3	90	0.61
13526351--13526393	17	2.4	19	78	21	56	20	2	4	72	1.14
13526453--13526502	26	1.9	26	83	0	64	8	20	6	66	1.40
13526659--13526780	22	5.4	21	71	19	68	13	6	3	76	1.11
13526671--13526779	37	2.8	38	81	13	116	14	5	2	77	1.07
13527239--13527274	18	2.0	18	88	0	54	13	13	2	69	1.30
13527685--13527734	12	4.3	12	72	10	50	24	10	8	58	1.57
13528075--13528129	25	2.2	25	81	12	60	14	9	3	72	1.23
13528148--13528189	22	1.9	22	85	9	59	9	9	2	78	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13528127--13528208	34	2.4	34	82	12	96	12	7	3	76	1.11
13528671--13528706	18	2.0	18	88	0	54	13	13	2	69	1.30
13528722--13528757	18	1.9	19	88	5	56	16	2	5	75	1.12
13528854--13528886	16	2.1	16	88	11	50	12	12	6	69	1.35
13528876--13528933	24	2.3	25	76	5	64	13	8	5	72	1.26
13528975--13529012	14	2.6	15	87	4	51	10	7	5	76	1.15
13529124--13529173	12	4.3	12	72	10	50	26	10	6	58	1.54
13529221--13529263	17	2.4	19	78	21	56	20	2	4	72	1.14
13529536--13529599	7	8.9	7	77	13	67	14	3	3	79	0.97
13529536--13529643	16	7.0	15	69	16	69	13	5	2	77	1.05
13529538--13529609	29	2.6	26	74	22	67	13	4	2	79	1.00
13529561--13529660	11	9.1	10	71	15	56	17	5	3	75	1.11
13529539--13529641	44	2.3	44	83	8	120	13	5	2	77	1.06
13529528--13529614	22	3.9	21	72	19	70	12	4	3	79	1.01
13529568--13529647	33	2.4	33	80	17	94	13	5	3	77	1.07
13530111--13530145	18	1.9	18	88	0	52	14	14	2	68	1.32
13530163--13530198	18	1.9	19	94	5	65	13	2	5	77	1.05
13530294--13530326	16	2.1	16	88	11	50	12	12	6	69	1.35
13530564--13530613	12	4.3	12	72	10	50	24	10	8	58	1.57
13530662--13530706	17	2.5	19	80	20	60	20	2	4	73	1.11
13530696--13530725	7	4.4	7	91	8	53	16	0	0	83	0.65
13530696--13530721	13	2.0	13	100	0	52	15	0	0	84	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13530763--13530812	26	1.9	26	83	0	64	8	20	6	66	1.40
13530976--13531039	7	8.9	7	77	13	67	14	3	3	79	0.97
13530977--13531049	22	3.5	21	78	9	69	13	4	2	79	0.99
13530976--13531083	16	7.0	15	69	16	69	13	5	2	77	1.05
13530978--13531049	29	2.6	26	74	22	67	13	4	2	79	1.00
13531001--13531100	11	9.1	10	71	15	56	17	5	3	75	1.11
13530979--13531081	44	2.3	44	83	8	120	13	5	2	77	1.06
13531008--13531087	33	2.4	33	80	17	94	13	5	3	77	1.07
13531555--13531589	18	1.9	18	88	0	52	14	14	2	68	1.32
13531607--13531643	19	1.9	19	89	10	58	13	2	5	78	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117