genome.fa.s101.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  88  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15994577--15994920	186	1.8	187	87	1	512	54	10	5	29	1.57
15995505--15995538	12	2.9	12	91	4	52	67	5	0	26	1.13
15995680--15995723	22	2.0	22	82	4	54	47	0	2	50	1.13
16002141--16002192	17	3.1	16	81	8	52	26	1	32	38	1.68
16002162--16002197	16	2.3	15	90	4	54	25	2	30	41	1.69
16002282--16002358	14	5.4	14	73	13	50	24	1	24	49	1.58
16002257--16002367	30	3.8	30	79	7	120	21	1	27	49	1.59
16002260--16002367	29	3.7	29	78	10	112	22	1	25	50	1.59
16002256--16002448	58	3.4	56	82	8	178	21	1	27	49	1.59
16002381--16002434	16	3.7	15	71	19	51	24	0	29	46	1.53
16002282--16002462	57	3.2	57	80	9	158	23	1	25	49	1.60
16002425--16002476	14	3.7	14	75	10	52	15	1	26	55	1.50
16002803--16002843	14	3.0	14	89	3	57	24	2	0	73	0.96
16003062--16003091	15	1.9	16	93	6	53	73	0	0	26	0.84
16021419--16021491	12	6.4	12	72	27	54	34	1	0	64	1.02
16021433--16021492	16	3.7	16	80	10	77	35	1	0	63	1.05
16021433--16021489	8	7.1	8	75	15	55	33	1	0	64	1.04
16021480--16021530	20	2.7	19	79	8	68	49	0	1	49	1.12
16030790--16030827	2	19.5	2	89	5	60	47	0	0	52	1.00
16033186--16033234	21	2.3	22	82	6	57	26	0	6	67	1.14
16037988--16038154	84	2.0	83	98	1	325	29	17	13	38	1.88
16040706--16040736	2	15.5	2	100	0	62	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16043742--16043788	25	1.9	24	91	4	76	53	0	4	42	1.20
16043747--16043800	25	2.2	25	83	6	65	59	0	3	37	1.15
16043811--16043866	23	2.6	22	83	8	62	51	0	0	48	1.00
16050807--16050873	30	2.2	30	94	0	116	31	10	17	40	1.84
16054335--16054434	30	3.3	30	85	2	130	35	12	12	41	1.79
16061055--16061111	29	2.0	29	89	0	87	29	10	15	43	1.80
16061307--16061331	12	2.1	12	100	0	50	40	32	8	20	1.81
16062061--16062114	27	2.0	27	89	7	83	37	16	16	29	1.91
16062293--16062349	26	2.2	26	93	0	96	42	22	10	24	1.85
16064863--16064896	16	2.1	16	100	0	68	47	26	5	20	1.73
16066301--16066329	15	1.9	15	100	0	58	72	0	0	27	0.85
16066304--16066357	24	2.2	24	86	0	72	64	3	0	31	1.11
16067790--16067854	31	2.1	31	97	0	121	46	10	13	29	1.77
16074414--16074463	15	3.4	15	70	13	50	48	0	0	52	1.00
16075921--16075957	18	2.1	17	90	5	56	62	0	0	37	0.96
16076981--16077012	17	1.9	16	93	6	55	68	0	6	25	1.12
16077128--16077177	5	10.6	5	83	12	54	0	22	0	78	0.76
16077129--16077178	4	12.0	4	82	18	50	0	24	0	76	0.80
16077969--16078003	17	2.1	16	89	5	52	62	11	2	22	1.41
16084081--16084129	24	2.0	24	96	0	89	38	8	10	42	1.68
16087321--16087437	31	3.7	31	74	6	101	41	3	5	48	1.44
16087596--16087636	21	2.0	20	85	4	55	14	7	0	78	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16105764--16105815	25	2.1	25	82	13	63	50	3	0	46	1.20
16107241--16107306	34	1.9	34	81	6	80	51	6	4	37	1.47
16108624--16108658	8	4.1	8	86	13	52	60	0	0	40	0.97
16114175--16114223	24	2.0	24	96	0	89	38	8	10	42	1.68
16132772--16132872	50	2.0	50	98	0	193	23	10	27	37	1.88
16137645--16137695	27	2.0	26	85	14	70	35	0	0	64	0.94
16138377--16138449	28	2.5	28	72	16	69	42	4	1	52	1.29
16139188--16139252	34	1.9	33	84	3	85	49	6	6	38	1.53
16139164--16139252	33	2.7	33	78	3	90	47	4	5	42	1.47
16140564--16140598	8	4.1	8	86	13	52	60	0	0	40	0.97
16140570--16140606	18	2.1	18	89	0	56	62	0	0	37	0.96
16141159--16141311	52	2.9	51	78	9	148	50	13	6	29	1.67
16141185--16141228	16	2.6	17	82	13	56	50	15	4	29	1.64
16142465--16142508	17	2.7	16	79	6	61	54	0	0	45	0.99
16144606--16144766	52	3.1	50	77	11	150	49	14	6	29	1.68
16144603--16144713	51	2.2	50	81	10	136	47	16	6	29	1.71
16144594--16144768	53	3.4	51	77	10	151	47	13	6	32	1.68
16146106--16146149	18	2.6	16	86	13	70	59	0	2	38	1.10
16146469--16146501	17	1.9	17	88	11	50	42	18	6	33	1.75
16152209--16152241	15	2.1	17	88	11	52	57	6	6	30	1.47
16151782--16152851	538	2.0	531	88	3	1601	41	5	7	44	1.56
16155327--16155389	22	2.9	22	78	0	72	50	3	9	36	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16155524--16155598	22	3.5	22	75	3	71	44	2	10	42	1.53
16155796--16155897	21	4.7	21	72	20	75	81	13	0	4	0.85
16155804--16155884	11	7.3	11	81	13	60	83	9	0	6	0.79
16155802--16155905	36	2.9	36	78	14	99	82	12	0	4	0.81
16155845--16155906	24	2.7	23	79	16	74	80	16	0	3	0.83
16155801--16155906	10	9.8	10	77	19	81	82	13	0	4	0.83
16155802--16155880	1	79.0	1	69	0	50	84	10	0	5	0.75
16155802--16155906	38	2.8	38	83	11	112	82	12	0	4	0.81
16156373--16156745	144	2.6	142	81	6	421	33	13	11	41	1.81
16161420--16161450	3	10.3	3	100	0	62	32	0	32	35	1.58
16168279--16168317	19	2.1	19	85	9	53	48	2	0	48	1.15
16168332--16168414	25	3.2	26	80	14	100	44	1	1	53	1.16
16168556--16168660	19	5.3	19	74	17	74	20	8	0	69	1.20
16168563--16168600	12	3.1	12	82	17	51	18	5	0	76	0.97
16168556--16168666	20	5.6	19	73	19	77	20	8	1	69	1.23
16168914--16168947	14	2.4	14	90	0	50	41	2	11	44	1.56
16169449--16169891	58	7.7	57	81	9	481	35	13	6	43	1.71
16169447--16169891	115	3.9	116	85	4	564	35	13	6	43	1.72
16169449--16169874	173	2.5	171	87	4	588	35	14	7	42	1.72
16169909--16170029	5	23.6	5	71	18	56	77	2	5	14	1.05
16169907--16169971	7	8.9	7	73	18	53	81	1	4	12	0.91
16169908--16170015	6	18.7	6	71	16	68	79	2	5	12	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16169906--16170015	22	4.9	21	73	19	71	80	2	5	11	0.99
16170530--16170569	13	3.0	13	82	7	53	60	17	2	20	1.48
16170835--16170896	20	3.0	20	80	15	72	70	3	4	20	1.19
16170859--16170898	11	3.5	12	75	25	50	62	5	5	27	1.37
16170847--16170898	22	2.5	21	87	12	72	65	3	5	25	1.32
16171012--16171102	6	14.0	6	72	19	60	76	2	2	18	0.99
16171012--16171104	33	2.8	34	82	11	95	76	2	2	19	0.99
16171261--16171324	1	64.0	1	74	0	56	7	0	4	87	0.66
16171249--16171324	17	4.5	16	87	8	89	10	0	3	85	0.72
16171249--16171324	9	9.0	8	87	8	89	10	0	3	85	0.72
16171252--16171324	23	3.2	23	74	5	67	9	0	4	86	0.70
16171369--16171710	124	2.8	124	86	5	469	35	21	16	26	1.95
16171369--16171710	41	8.3	41	89	3	445	35	21	16	26	1.95
16172723--16172773	8	6.5	8	90	4	77	9	7	0	82	0.85
16181429--16181726	57	5.1	58	82	4	316	34	12	7	45	1.69
16181744--16181828	5	16.6	5	70	22	52	78	2	4	14	1.00
16181744--16181827	37	2.3	35	82	8	98	78	2	4	14	1.01
16181749--16181819	31	2.3	31	83	11	85	78	2	5	12	1.03
16181744--16181830	32	2.6	33	77	14	90	78	2	5	13	1.03
16182718--16182770	22	2.5	21	82	11	65	62	5	5	26	1.40
16182886--16182986	11	8.2	13	77	14	56	74	0	3	20	1.04
16182889--16182997	47	2.4	44	77	14	112	76	0	3	19	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16182857--16182961	31	3.5	29	75	15	83	72	1	2	22	1.08
16182857--16182999	18	7.9	17	72	16	85	73	2	3	20	1.09
16182889--16182997	6	18.0	6	73	16	82	76	0	3	19	0.99
16182940--16182999	32	1.9	30	83	12	77	76	1	5	16	1.04
16184683--16184785	18	5.6	18	67	13	50	25	3	0	69	1.11
16184701--16184755	26	2.2	24	83	6	65	27	3	1	67	1.17
16184681--16184811	17	8.0	16	70	18	74	24	5	0	69	1.14
16184733--16184834	33	3.0	33	78	8	98	25	6	0	66	1.22
16184746--16184808	30	2.0	31	87	9	92	23	6	0	69	1.11
16184695--16184796	53	1.9	52	83	15	129	26	4	0	67	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117