genome.fa.s101.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  92  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16535132--16535358	91	2.5	91	77	7	230	36	6	15	41	1.74
16535457--16535494	20	1.9	20	84	10	51	26	13	18	42	1.87
16535564--16535643	35	2.3	35	80	6	90	37	12	11	38	1.79
16535784--16535857	35	2.1	35	84	0	94	37	10	14	36	1.82
16535801--16535908	35	3.1	35	78	4	101	35	12	15	36	1.86
16535865--16535917	17	3.1	17	72	5	52	30	16	16	35	1.92
16535830--16535917	35	2.5	34	81	3	95	32	15	14	36	1.89
16546142--16546178	16	2.3	16	85	0	56	40	21	2	35	1.68
16547504--16547536	13	2.5	13	95	5	57	45	24	0	30	1.53
16550535--16550906	132	2.8	131	81	6	326	20	17	11	50	1.77
16550655--16550857	65	3.1	63	70	13	167	21	18	11	48	1.79
16550679--16551006	132	2.5	132	82	6	378	20	18	12	48	1.80
16554666--16554717	17	3.0	18	76	15	56	53	9	3	32	1.51
16554881--16554905	7	3.6	7	100	0	50	72	0	0	28	0.86
16555942--16556091	43	3.5	42	83	6	201	42	15	13	28	1.84
16561640--16561685	21	2.3	20	85	7	58	58	6	2	32	1.36
16562801--16562869	22	3.3	22	74	22	76	50	8	5	34	1.57
16562776--16562882	41	2.8	35	79	17	124	48	8	6	36	1.59
16562776--16562885	18	5.8	18	76	23	93	49	8	6	36	1.58
16562796--16562877	41	2.0	41	100	0	164	48	9	7	34	1.64
16562818--16562897	20	4.0	20	74	22	69	51	11	6	31	1.62
16563081--16563228	32	4.8	32	69	16	107	52	12	5	29	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16563091--16563215	44	2.9	42	67	16	110	53	12	3	30	1.54
16563145--16563196	24	2.3	23	81	15	65	50	11	5	32	1.62
16563218--16563269	20	2.7	19	84	3	68	50	13	5	30	1.65
16563292--16563343	24	2.1	24	82	3	59	75	11	0	13	1.06
16563821--16563863	12	3.7	12	81	3	52	67	9	0	23	1.19
16564043--16564279	129	1.8	129	87	3	352	34	9	6	48	1.62
16567254--16567283	13	2.3	13	94	0	51	26	13	13	46	1.80
16567370--16567406	14	2.6	14	82	0	56	27	0	5	67	1.12
16567589--16567654	29	2.3	29	76	5	71	42	1	3	53	1.25
16568439--16568484	23	2.0	23	86	0	65	58	0	0	41	0.98
16568452--16568503	23	2.3	22	81	15	61	65	0	0	34	0.93
16568871--16568961	36	2.5	36	77	13	107	41	4	1	52	1.28
16576782--16576925	52	2.8	52	86	3	184	27	25	8	38	1.84
16576954--16577000	22	2.1	22	88	0	67	51	25	2	21	1.59
16576962--16577003	11	3.8	11	87	0	66	50	30	0	19	1.48
16576962--16577004	22	2.0	22	95	0	77	48	30	0	20	1.50
16577175--16577211	18	2.0	19	89	5	58	18	35	13	32	1.90
16577268--16577363	25	3.9	25	83	1	122	19	33	9	37	1.84
16577895--16578039	52	2.8	52	86	4	195	27	26	7	37	1.83
16578076--16578117	11	3.8	11	80	0	57	50	28	0	21	1.49
16583733--16583784	15	3.4	15	78	5	59	13	11	1	73	1.19
16589668--16589707	18	2.3	18	82	4	55	57	15	5	22	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16591181--16591242	21	3.0	20	80	17	58	75	3	1	19	1.02
16592005--16592061	18	3.2	19	85	11	68	64	1	3	29	1.20
16592052--16592111	12	4.8	12	82	13	77	81	5	0	13	0.84
16592046--16592111	20	3.5	20	74	17	61	78	4	1	15	0.98
16592297--16592389	44	2.1	44	90	4	143	39	19	15	25	1.90
16592381--16592506	40	3.1	40	86	5	164	43	23	8	24	1.81
16604197--16604365	59	2.8	58	81	12	166	36	13	5	43	1.69
16604476--16604516	18	2.3	18	91	8	66	56	0	0	43	0.99
16604376--16604605	62	3.7	62	81	12	233	38	11	3	46	1.57
16604388--16604613	125	1.8	121	82	11	285	38	11	2	46	1.55
16604690--16604743	12	4.7	12	79	9	58	72	1	1	24	1.05
16604699--16604742	6	7.7	6	89	5	65	72	2	0	25	0.96
16604693--16604736	22	2.0	23	86	4	63	75	2	2	20	1.03
16604690--16604747	28	2.1	27	87	3	80	70	1	1	25	1.06
16604776--16604814	10	3.6	11	87	12	55	74	2	0	23	0.94
16605624--16605699	3	24.7	3	72	19	59	65	1	2	30	1.14
16605677--16605762	7	14.0	6	76	12	52	77	4	2	15	1.02
16605719--16605761	11	3.9	11	87	6	61	81	2	0	16	0.79
16606619--16606668	26	1.9	26	95	0	91	38	10	14	38	1.79
16606863--16606900	19	2.0	19	89	0	58	57	0	0	42	0.98
16608077--16608156	33	2.4	32	78	12	81	45	2	2	50	1.28
16608602--16608648	17	2.6	19	83	16	64	44	4	0	51	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16613875--16613935	30	2.0	30	90	0	95	32	19	14	32	1.92
16614524--16614808	144	2.0	144	81	4	333	40	11	4	43	1.61
16614525--16614813	72	4.0	73	79	6	277	39	11	4	43	1.63
16615728--16615770	22	2.0	22	90	0	68	27	6	25	39	1.81
16616037--16616112	27	3.0	26	69	7	66	46	1	1	51	1.17
16617123--16617163	18	2.2	18	86	4	55	78	0	9	12	0.98
16617561--16617631	15	4.7	15	82	6	90	54	25	1	18	1.51
16617858--16617882	3	8.3	3	100	0	50	64	0	0	36	0.94
16619013--16619205	72	2.7	73	83	7	234	39	12	5	42	1.66
16620222--16620262	21	2.0	21	95	0	73	31	4	7	56	1.48
16620575--16620621	3	15.7	3	100	0	94	31	0	0	68	0.90
16623867--16623899	17	1.9	17	93	0	57	51	0	9	39	1.34
16624242--16624302	25	2.4	26	86	2	88	34	0	4	60	1.18
16629585--16629620	17	2.1	17	94	0	63	47	0	8	44	1.33
16629959--16630019	25	2.4	25	86	7	88	32	0	4	62	1.17
16640444--16640597	3	54.3	3	77	13	130	33	4	1	59	1.29
16641421--16641455	14	2.6	13	86	8	52	8	2	0	88	0.61
16641421--16641468	19	2.5	19	80	12	53	10	2	2	85	0.77
16641449--16641512	26	2.3	28	84	10	78	20	6	6	67	1.35
16641460--16641515	30	2.0	28	89	10	87	21	7	5	66	1.37
16641488--16641526	18	2.2	18	86	9	53	23	7	10	58	1.56
16641486--16641528	19	2.3	18	77	18	52	25	6	9	58	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16646252--16646348	10	9.8	10	67	18	51	77	2	14	6	1.05
16646315--16646348	17	2.0	17	100	0	68	88	0	11	0	0.52
16647701--16647832	13	9.9	13	72	9	52	34	4	4	56	1.40
16647704--16647837	5	25.6	5	72	14	69	35	4	3	56	1.37
16647756--16647791	12	2.9	12	87	4	54	41	0	5	52	1.24
16647759--16647834	17	4.9	15	76	20	68	36	2	1	59	1.20
16647767--16647871	3	36.3	3	82	11	76	34	7	1	56	1.39
16647699--16647828	51	2.6	48	77	14	113	35	5	4	54	1.44
16648692--16648730	13	2.9	13	88	3	51	17	5	0	76	0.96
16648718--16648775	29	2.1	29	81	12	70	25	10	1	62	1.37
16648927--16648965	6	6.3	6	85	5	51	79	2	2	15	0.95
16650051--16650111	27	2.3	26	91	2	95	44	8	11	36	1.71
16655704--16655796	35	2.7	34	93	3	152	33	5	6	54	1.49
16656443--16656478	18	2.0	18	94	0	63	27	0	8	63	1.23
16663931--16663955	2	12.5	2	100	0	50	52	0	0	48	1.00
16663957--16663981	2	12.5	2	100	0	50	52	48	0	0	1.00
16671804--16671842	19	2.0	20	90	5	62	23	5	23	48	1.70
16671905--16671970	31	2.2	29	83	5	78	39	4	9	46	1.56
16672350--16672405	26	2.2	25	81	9	60	48	0	0	51	1.00
16672561--16672602	13	3.0	14	83	16	52	47	0	2	50	1.14
16674147--16674178	2	16.0	2	100	0	64	50	0	0	50	1.00
16681077--16681115	19	2.0	20	90	5	62	23	5	23	48	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16681622--16681676	25	2.2	25	83	6	67	49	0	0	50	1.00
16681831--16681872	13	3.0	14	83	16	52	47	0	2	50	1.14
16682028--16682104	31	2.5	32	83	8	88	41	9	9	40	1.68
16685968--16686008	20	2.0	20	86	9	57	60	2	4	31	1.30
16687857--16687887	14	2.1	15	94	5	55	41	19	6	32	1.77
16691223--16691289	29	2.3	29	78	0	71	58	19	0	22	1.40
16701641--16701765	61	2.0	62	89	6	191	24	12	17	44	1.84
16704838--16704895	25	2.4	24	82	8	73	51	0	3	44	1.18
16707768--16707886	51	2.3	51	80	5	125	35	7	7	49	1.60
16709426--16709453	5	5.6	5	100	0	56	42	0	0	57	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117