genome.fa.s101.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  16  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1691611--1691647	14	2.4	17	86	13	53	16	5	2	75	1.10
1692019--1692073	25	2.2	25	87	6	76	38	1	18	41	1.61
1692713--1693112	57	6.7	57	86	9	534	44	8	13	34	1.73
1692713--1693112	121	3.4	116	89	7	581	44	8	13	34	1.73
1695177--1695231	24	2.4	23	76	8	58	12	27	3	56	1.53
1695312--1695569	129	2.0	129	100	0	516	31	20	11	36	1.88
1699348--1699437	26	3.4	25	77	14	85	46	3	0	50	1.18
1699591--1699625	17	2.1	17	94	0	61	62	0	5	31	1.18
1699668--1699700	13	2.6	13	90	4	50	48	0	3	48	1.17
1700116--1700148	17	1.9	17	93	0	57	45	3	6	45	1.43
1700219--1700255	19	1.9	19	94	0	65	35	2	0	62	1.10
1700408--1700448	16	2.9	14	86	13	57	46	0	2	51	1.14
1702487--1702523	19	2.1	18	90	10	58	72	2	2	21	1.09
1706161--1706333	60	2.9	60	82	6	206	37	14	5	42	1.70
1706161--1706313	61	2.5	62	84	7	181	36	15	5	43	1.69
1706565--1706771	60	3.5	59	74	15	196	35	10	6	47	1.63
1707020--1707065	21	2.3	20	85	14	60	73	4	13	8	1.21
1707848--1707877	13	2.2	14	94	5	53	23	0	0	76	0.78
1708150--1708697	85	6.4	83	73	8	294	45	15	18	21	1.85
1708291--1708617	177	1.9	176	80	1	395	47	14	18	19	1.83
1710944--1711345	186	2.2	184	80	6	436	35	12	8	43	1.74
1711021--1711391	186	2.0	188	84	5	493	38	11	7	43	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1711367--1711420	18	3.1	17	81	7	65	20	1	1	75	0.98
1726055--1726097	18	2.4	18	84	7	52	30	4	0	65	1.13
1726292--1726344	6	8.2	6	78	21	54	20	1	0	77	0.87
1726292--1726344	13	4.1	13	77	15	56	20	1	0	77	0.87
1726292--1726338	19	2.4	19	86	10	60	19	2	0	78	0.85
1726424--1726473	21	2.3	20	83	12	64	64	4	0	32	1.12
1728859--1728898	21	1.9	21	85	10	55	12	22	10	55	1.67
1732837--1732902	19	3.4	20	85	6	91	33	3	1	62	1.20
1732829--1732947	10	12.2	10	69	13	61	33	4	1	60	1.26
1732848--1732952	24	4.6	24	75	17	93	35	4	0	59	1.25
1733693--1733732	3	13.0	3	94	5	71	32	0	0	67	0.91
1733823--1733929	55	1.9	56	94	1	189	45	11	10	32	1.73
1733858--1734025	82	2.0	82	97	0	318	47	11	10	29	1.74
1733939--1734123	54	3.4	55	86	3	282	47	11	10	30	1.74
1734138--1734281	55	2.7	55	81	12	172	41	11	13	34	1.79
1744722--1744770	22	2.3	21	82	6	62	79	0	18	2	0.83
1745790--1745998	44	5.1	42	71	20	131	23	13	20	42	1.87
1745839--1745909	35	2.0	35	89	5	108	23	14	22	39	1.91
1745800--1746014	79	2.6	83	80	10	246	23	13	21	41	1.88
1745874--1746034	44	3.7	43	74	10	132	22	13	22	40	1.89
1746231--1746297	20	3.4	20	85	2	91	32	2	1	62	1.19
1746231--1746303	10	7.3	10	75	4	58	32	4	1	61	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1746260--1746347	24	3.6	25	76	15	96	35	6	1	56	1.33
1747193--1747411	55	3.9	55	82	4	287	45	9	11	33	1.73
1747201--1747557	110	3.2	110	78	14	380	45	10	10	33	1.73
1747433--1747519	44	2.0	45	83	2	113	45	13	8	32	1.73
1749219--1749429	60	3.4	60	80	9	244	38	12	6	42	1.68
1749664--1749942	59	4.7	57	70	16	171	37	9	6	46	1.63
1750576--1750614	20	2.0	20	89	0	60	43	17	2	35	1.63
1755315--1755344	12	2.5	12	94	0	51	16	20	33	30	1.94
1757638--1757807	72	2.4	72	90	0	268	33	12	26	27	1.93
1760862--1760927	25	2.5	28	78	14	77	36	3	3	57	1.29
1762125--1762189	25	2.6	25	71	9	69	58	1	0	40	1.07
1762566--1762665	18	5.8	17	78	10	73	38	1	7	54	1.35
1762574--1762659	13	6.2	13	74	21	68	38	0	8	53	1.31
1762536--1762664	36	3.4	36	80	8	123	36	3	6	53	1.44
1762595--1762666	26	2.8	25	79	6	81	38	0	6	54	1.28
1762539--1762659	39	3.2	38	81	5	120	36	4	6	52	1.47
1762571--1762677	5	21.4	5	73	17	53	36	1	6	55	1.37
1763652--1763685	17	2.0	17	94	0	59	73	0	11	14	1.10
1766551--1766599	17	3.0	16	80	11	55	34	0	2	63	1.06
1767865--1767932	29	2.3	30	95	5	122	67	13	8	10	1.41
1768442--1768484	17	2.6	18	82	14	56	18	0	6	74	1.04
1770613--1770650	19	2.0	20	84	5	51	57	2	2	36	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1775345--1775400	15	3.7	15	77	13	62	44	1	0	53	1.11
1775402--1775439	18	2.2	16	90	9	58	44	0	0	55	0.99
1776846--1776960	60	1.9	62	92	3	198	30	19	6	44	1.74
1779615--1779720	50	2.1	50	82	3	133	41	19	8	30	1.81
1780364--1780552	85	2.2	85	83	2	229	39	18	14	27	1.89
1781161--1781389	116	1.9	116	93	4	395	33	12	8	45	1.73
1781161--1781380	57	3.7	57	89	6	332	33	13	8	45	1.73
1781458--1781518	11	5.2	11	79	14	68	83	3	1	11	0.83
1781461--1781521	32	1.9	31	90	3	95	83	4	1	9	0.86
1781844--1781881	20	1.9	20	94	0	67	23	18	26	31	1.97
1781922--1781969	19	2.5	19	82	0	60	22	27	29	20	1.99
1781942--1782011	31	2.3	31	82	12	90	25	24	22	27	2.00
1789339--1789373	19	1.9	18	88	11	54	48	5	5	40	1.51
1789223--1789584	60	5.8	60	78	14	310	33	12	6	47	1.66
1791058--1791335	42	6.6	42	86	3	326	43	20	12	23	1.86
1791440--1791565	41	3.0	41	87	1	189	32	11	10	45	1.75
1791797--1791858	21	3.0	21	85	4	90	35	16	12	35	1.87
1791797--1791857	20	3.0	20	87	2	86	34	16	13	36	1.87
1797167--1797514	60	5.5	60	76	15	217	33	11	6	49	1.63
1810002--1810237	58	3.8	66	79	15	193	35	12	4	47	1.62
1810067--1810240	59	3.0	59	88	5	255	35	13	5	45	1.66
1809882--1810237	60	5.8	58	77	14	278	33	12	5	48	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1811675--1811978	42	7.2	41	84	3	257	42	21	13	23	1.88
1811705--1811978	86	3.2	85	84	2	336	43	20	13	22	1.86
1811698--1811970	128	2.1	125	82	6	325	44	19	12	23	1.85
1812075--1812205	41	3.2	41	87	1	190	32	12	10	43	1.78
1812440--1812501	21	3.0	21	85	4	90	35	16	12	35	1.87
1812440--1812500	20	3.0	20	87	2	86	34	16	13	36	1.87
1817813--1818162	60	5.5	59	73	15	186	33	12	5	49	1.63
1825472--1825545	3	24.7	3	100	0	148	67	32	0	0	0.91
1825544--1825587	3	14.7	3	100	0	88	68	0	0	31	0.90
1834272--1834783	72	7.1	72	60	16	164	35	16	22	26	1.94
1834190--1835113	144	6.4	144	93	0	1528	34	15	23	26	1.94
1834190--1835684	288	5.3	288	91	3	2431	34	15	23	26	1.95
1834190--1835684	432	3.5	432	90	4	2417	34	15	23	26	1.95
1834987--1835237	124	2.0	124	98	0	484	33	16	22	27	1.96
1835188--1835555	72	5.1	72	61	16	195	34	14	24	27	1.94
1835111--1835684	144	4.0	144	96	0	1049	34	16	23	25	1.95
1835404--1835627	72	3.1	72	62	16	174	33	16	20	28	1.95
1837406--1837447	15	2.6	16	81	11	50	54	0	0	45	0.99
1838568--1838606	20	2.0	20	89	0	60	64	0	0	35	0.94
1839423--1839520	50	2.0	50	85	4	135	41	10	11	36	1.75
1839501--1839619	61	2.0	62	88	3	179	30	14	13	42	1.84
1839832--1840123	60	4.8	58	78	7	235	38	13	16	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1839834--1840057	121	1.8	121	82	4	290	39	12	17	30	1.87
1839736--1840185	244	1.9	242	81	7	554	39	12	14	33	1.85
1839733--1840181	122	3.7	117	74	10	357	38	12	15	33	1.85
1839867--1840181	60	5.2	61	73	11	211	39	13	15	31	1.86
1841265--1841335	34	2.1	34	84	5	90	29	15	11	43	1.81
1842264--1842309	14	3.4	14	79	8	51	26	4	2	67	1.21
1842916--1842950	18	1.9	18	88	0	52	57	0	0	42	0.99
1843476--1843509	14	2.2	16	90	10	54	47	0	5	47	1.26
1843547--1843592	20	2.2	21	80	3	58	43	2	0	54	1.12
1849974--1850060	40	2.1	42	79	8	99	29	5	9	55	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117