genome.fa.s101.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  103  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18118865--18118915	26	2.0	26	88	0	75	29	15	23	31	1.95
18121548--18121599	26	2.0	26	100	0	104	26	19	26	26	1.99
18123348--18123398	26	2.0	26	96	0	93	27	17	27	27	1.98
18125115--18125167	26	2.0	26	96	0	97	26	18	24	30	1.98
18126012--18126064	26	2.0	26	96	0	97	28	20	24	26	1.99
18117657--18130382	899	14.3	898	85	4	15734	25	23	24	25	2.00
18126911--18126963	26	2.0	26	92	0	88	26	16	26	30	1.97
18127583--18127607	13	1.9	13	100	0	50	32	16	40	12	1.84
18128682--18128734	26	2.0	26	88	0	79	30	22	22	24	1.99
18132132--18132184	26	2.0	26	88	0	79	26	18	26	28	1.98
18132795--18132873	26	3.0	26	92	0	131	27	20	25	26	1.99
18132847--18151067	891	20.4	855	76	10	12559	25	23	24	25	2.00
18136306--18136358	26	2.0	26	96	0	97	28	20	24	26	1.99
18132847--18139294	876	7.3	871	83	5	7186	25	23	24	25	2.00
18138961--18139013	26	2.0	26	92	0	88	28	18	24	28	1.98
18140882--18140934	26	2.0	26	92	7	90	26	20	26	26	1.99
18141775--18141827	26	2.0	27	88	3	81	32	18	24	24	1.97
18142646--18142696	26	2.0	26	92	0	84	31	13	27	27	1.94
18143538--18143588	26	2.0	26	84	7	68	27	15	27	29	1.96
18144427--18144479	26	2.0	26	88	0	79	32	16	22	28	1.96
18145323--18145374	26	2.0	26	100	0	104	26	19	26	26	1.99
18146213--18146271	26	2.3	26	91	5	95	27	20	25	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18140178--18151067	891	12.2	895	85	4	13562	25	23	24	25	2.00
18147111--18147163	26	2.0	26	96	0	97	28	20	24	26	1.99
18147980--18148032	26	2.0	26	92	0	88	26	16	26	30	1.97
18147261--18151067	896	4.2	897	85	4	4840	25	23	24	25	2.00
18149795--18149847	26	2.0	26	88	0	79	26	18	22	32	1.97
18151066--18153253	901	2.5	887	84	6	2739	25	25	23	25	2.00
18153175--18153226	26	2.0	25	85	3	68	34	21	19	25	1.96
18153095--18153405	155	2.0	155	86	2	437	29	28	22	19	1.98
18153330--18153381	25	2.0	26	85	3	70	30	17	21	30	1.96
18154219--18154271	26	2.0	26	92	0	88	28	22	22	26	1.99
18154967--18155019	26	2.0	26	92	0	88	26	16	26	30	1.97
18156857--18156906	26	1.9	26	91	0	82	32	22	24	22	1.98
18156446--18162245	899	6.5	898	85	5	7272	25	23	24	25	2.00
18160413--18160462	26	1.9	26	95	0	91	28	20	26	26	1.99
18162161--18162213	26	2.0	26	92	0	88	26	16	26	30	1.97
18163972--18164024	26	2.0	26	88	0	79	28	18	24	28	1.98
18166405--18166457	26	2.0	26	88	0	79	30	18	22	28	1.98
18165132--18173417	887	9.5	876	76	11	6121	25	24	24	25	2.00
18168923--18168955	11	3.0	11	95	0	57	12	36	33	18	1.88
18169036--18169093	26	2.2	26	87	0	80	34	20	20	24	1.97
18169858--18169910	26	2.0	26	92	0	88	28	18	24	28	1.98
18171645--18171695	26	2.0	26	100	0	102	29	15	27	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18169579--18173417	897	4.3	898	80	8	4179	26	24	24	25	2.00
18172799--18174129	712	1.9	717	86	5	1931	26	23	22	27	1.99
18174103--18174155	26	2.0	26	92	0	88	28	18	24	28	1.98
18175009--18175061	26	2.0	26	92	0	88	26	20	26	26	1.99
18173393--18177422	906	4.5	902	86	2	5418	25	23	24	26	2.00
18175909--18175961	26	2.0	26	92	0	88	28	18	24	28	1.98
18176797--18176849	26	2.0	26	92	0	88	28	18	24	28	1.98
18177570--18177622	26	2.0	26	88	0	79	22	18	28	30	1.98
18178457--18178509	26	2.0	26	96	0	97	28	20	24	26	1.99
18179357--18179409	26	2.0	26	100	0	106	26	20	26	26	1.99
18177422--18181183	903	4.2	896	87	2	5066	24	24	24	25	2.00
18180417--18181890	704	2.1	709	88	3	2193	25	22	24	27	2.00
18183590--18183642	26	2.0	26	96	0	97	26	22	24	26	2.00
18185568--18185619	26	2.0	26	92	0	86	32	19	19	28	1.96
18187126--18187178	26	2.0	26	92	0	88	28	18	24	28	1.98
18188030--18188084	26	2.1	26	96	0	101	27	21	29	21	1.99
18188909--18188960	26	2.0	26	92	3	88	28	19	23	28	1.98
18186270--18189712	888	3.9	886	85	4	4590	25	23	24	25	2.00
18191202--18191254	26	2.0	26	92	0	88	28	18	26	26	1.98
18193869--18193921	26	2.0	26	92	0	88	28	18	24	28	1.98
18192088--18200199	903	9.0	903	87	1	11026	25	23	24	26	2.00
18196563--18196615	26	2.0	26	92	0	88	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18197465--18197517	26	2.0	26	92	0	88	28	18	24	28	1.98
18198366--18198417	26	2.0	26	88	0	77	28	13	26	30	1.94
18199270--18199322	26	2.0	26	92	0	88	26	16	26	30	1.97
18201784--18201836	26	2.0	26	100	0	106	26	20	26	26	1.99
18200173--18202708	892	2.8	894	85	4	3214	26	23	24	25	2.00
18203370--18203423	26	2.1	26	96	0	99	25	22	25	25	2.00
18204271--18204323	26	2.0	26	88	0	79	28	20	24	26	1.99
18202720--18205199	903	2.8	898	87	3	3510	25	23	24	25	2.00
18205576--18205628	26	2.0	26	92	0	88	26	20	24	28	1.99
18206476--18206528	26	2.0	26	89	7	81	24	18	26	30	1.98
18207380--18207432	26	2.0	26	96	0	97	28	20	26	24	1.99
18209163--18209215	26	2.0	26	96	0	97	28	20	26	24	1.99
18205275--18210435	890	5.8	890	86	3	6965	25	25	24	24	2.00
18210051--18210103	26	2.0	26	96	0	97	26	18	28	26	1.98
18210900--18210952	26	2.0	26	96	0	97	26	18	26	28	1.98
18211807--18211859	26	2.0	26	92	0	88	26	16	26	30	1.97
18212705--18212757	26	2.0	26	88	0	79	28	20	22	28	1.99
18213591--18213642	26	2.0	26	92	0	86	28	17	21	32	1.96
18210443--18215613	907	5.8	900	88	3	6796	26	24	24	25	2.00
18215385--18215434	26	1.9	26	95	0	91	28	24	24	24	2.00
18216891--18216943	26	2.0	26	92	0	88	28	18	26	26	1.98
18217308--18217654	182	1.9	183	86	1	491	27	14	17	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18217977--18218029	26	2.0	26	100	0	106	26	20	26	26	1.99
18217490--18220662	901	3.6	895	85	6	4219	25	24	24	25	2.00
18219744--18219794	26	2.0	26	96	0	93	27	19	23	29	1.98
18222176--18222228	26	2.0	26	96	0	97	28	18	26	26	1.98
18223069--18223121	26	2.0	26	85	7	72	26	18	28	26	1.98
18221369--18225636	892	4.8	888	85	5	5438	25	23	24	25	2.00
18223492--18223541	26	1.9	26	87	0	73	22	10	10	58	1.60
18223965--18224017	26	2.0	26	96	0	97	28	20	24	26	1.99
18224838--18224890	26	2.0	26	96	0	97	26	18	26	28	1.98
18227994--18228046	26	2.0	26	96	0	97	28	20	24	26	1.99
18228425--18228474	26	1.9	26	87	0	73	22	12	12	54	1.69
18229611--18229661	26	2.0	26	96	0	93	27	21	21	29	1.99
18228874--18232303	901	3.9	874	84	5	4305	25	24	24	26	2.00
18233867--18233919	26	2.0	26	96	0	97	28	20	24	26	1.99
18232217--18236550	890	4.9	896	84	4	5376	25	24	24	26	2.00
18237240--18237292	26	2.0	26	96	0	97	28	20	26	24	1.99
18238073--18239485	732	1.9	731	88	1	2141	25	23	24	27	2.00
18239459--18239511	26	2.0	26	96	0	97	28	20	24	26	1.99
18240357--18240409	26	2.0	26	96	0	97	28	20	24	26	1.99
18241261--18241313	26	2.0	26	89	7	81	28	18	24	28	1.98
18238707--18243966	898	5.8	898	87	2	7159	25	23	24	25	2.00
18245569--18245621	26	2.0	26	88	0	79	30	18	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18243916--18249200	907	5.8	903	88	2	7626	25	23	24	25	2.00
18246474--18246522	26	1.9	26	91	4	82	30	22	22	24	1.99
18248777--18251369	699	3.6	698	86	7	3283	25	23	24	26	2.00
18250598--18250650	26	2.0	26	92	0	88	28	18	26	26	1.98
18252250--18252300	26	2.0	26	88	0	75	33	19	19	27	1.96
18250633--18259693	904	10.0	904	85	5	11199	25	24	24	25	2.00
18253155--18253206	26	2.0	26	92	3	88	28	21	23	26	1.99
18255875--18255926	26	2.0	25	92	3	86	30	21	21	26	1.98
18250633--18259693	905	10.0	903	85	5	11139	25	24	24	25	2.00
18256781--18256830	26	1.9	26	83	0	64	34	20	24	22	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117