genome.fa.s101.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  71  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13026439--13026606	66	2.5	67	81	1	196	29	15	18	36	1.92
13026439--13026629	66	2.9	65	78	6	188	30	15	16	37	1.90
13026454--13026658	33	6.2	33	71	13	127	31	13	17	38	1.88
13027288--13027351	26	2.4	27	85	10	80	64	0	1	34	1.03
13027278--13027343	9	7.1	9	77	16	64	63	0	1	34	1.04
13027290--13027357	17	4.0	17	76	17	70	66	0	1	32	1.01
13028800--13028831	16	2.1	15	94	5	55	0	3	9	87	0.64
13028802--13028831	15	2.0	15	93	0	51	0	3	6	90	0.56
13029722--13029746	9	2.8	9	100	0	50	72	8	0	20	1.10
13036958--13037052	32	2.8	33	79	4	84	32	17	13	35	1.89
13036959--13037103	35	4.2	34	76	7	100	34	16	16	32	1.92
13037569--13037647	32	2.5	31	83	8	95	31	21	17	29	1.96
13038389--13038426	12	3.2	12	85	7	51	2	5	2	89	0.64
13041816--13041845	3	10.0	3	100	0	60	66	0	0	33	0.92
13041844--13041880	3	12.7	3	94	5	67	35	0	0	64	0.94
13054541--13054584	3	15.0	3	95	4	81	31	0	0	68	0.90
13055038--13055105	3	23.3	3	84	11	88	67	0	2	29	1.05
13055030--13055105	21	3.8	21	80	11	88	67	0	2	30	1.05
13055447--13055489	12	3.5	12	81	6	50	37	27	16	18	1.92
13055842--13055875	11	3.0	11	91	4	50	58	0	0	41	0.98
13058768--13058807	4	10.0	4	88	0	62	22	27	2	47	1.64
13060810--13060850	21	2.0	20	85	4	55	58	12	9	19	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13061079--13061132	4	13.2	4	77	11	56	24	3	3	68	1.22
13061510--13061548	19	2.1	19	85	0	51	61	2	2	33	1.23
13061304--13061575	121	2.3	121	81	4	300	44	9	9	36	1.70
13062314--13062379	33	2.0	34	93	3	116	30	4	12	53	1.58
13062611--13063144	271	2.0	271	98	0	1025	31	15	16	36	1.90
13063159--13063293	61	2.2	61	86	2	182	32	20	11	35	1.88
13066040--13066087	11	4.5	11	82	12	55	4	8	4	83	0.90
13066061--13066087	12	2.2	12	100	0	54	7	7	0	85	0.75
13066048--13066093	20	2.3	20	88	7	67	6	8	2	82	0.91
13068182--13068206	9	2.8	9	100	0	50	8	0	24	68	1.16
13072924--13072967	22	2.0	22	86	0	61	38	9	4	47	1.56
13073951--13074005	26	2.1	26	83	6	67	14	10	7	67	1.41
13076714--13076750	10	3.7	10	88	0	56	86	2	10	0	0.67
13076714--13076750	18	1.9	19	89	10	58	86	2	10	0	0.67
13080347--13080398	17	3.1	16	81	8	59	78	11	0	9	0.95
13080361--13080400	11	3.3	13	83	10	50	80	10	0	10	0.92
13086880--13086919	6	6.5	6	85	5	53	62	2	2	32	1.22
13086871--13086919	19	2.7	18	81	6	55	63	6	2	28	1.30
13097374--13097645	141	1.9	141	81	7	329	30	11	15	43	1.81
13097591--13097916	141	2.3	141	80	4	343	33	13	11	42	1.80
13099143--13099355	38	5.9	37	72	13	122	42	41	1	14	1.56
13099201--13099370	19	9.5	19	74	13	137	44	42	0	12	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13099256--13099313	30	1.9	30	89	0	89	48	39	0	12	1.40
13099895--13099951	28	2.1	27	83	3	69	49	5	8	36	1.57
13106017--13106092	22	3.6	22	66	16	61	43	7	9	39	1.66
13106017--13106089	11	6.9	11	70	9	53	45	8	8	38	1.64
13106010--13106091	41	2.0	41	85	0	110	43	8	7	40	1.63
13106838--13106865	2	14.0	2	100	0	56	0	0	50	50	1.00
13107437--13107494	31	1.9	30	89	3	89	41	8	3	46	1.51
13111232--13111266	2	17.5	2	100	0	70	51	0	0	48	1.00
13112470--13112516	23	2.1	22	88	7	69	31	2	27	38	1.69
13114422--13114457	8	4.5	8	96	0	63	13	0	8	77	0.98
13116505--13116546	21	2.2	20	83	12	52	50	4	4	40	1.45
13116674--13116706	17	1.9	17	100	0	66	72	0	6	21	1.05
13117217--13117258	20	2.1	21	86	8	61	47	0	9	42	1.36
13118194--13118420	47	5.0	46	74	7	176	40	11	10	37	1.75
13118325--13118428	26	4.2	26	65	16	76	40	10	14	34	1.80
13130245--13130568	63	5.2	62	73	5	260	36	12	12	37	1.82
13130231--13130579	186	1.9	186	84	1	475	36	12	12	38	1.81
13130899--13131052	63	2.4	63	77	10	156	38	13	10	37	1.79
13131820--13131899	28	2.8	28	86	3	97	20	2	30	47	1.63
13131915--13131940	13	2.0	13	100	0	52	23	7	23	46	1.78
13145363--13145412	26	2.0	26	84	11	68	64	4	14	18	1.44
13152234--13152269	15	2.4	15	90	0	54	47	16	2	33	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13163588--13163623	12	2.9	12	87	4	54	63	2	0	33	1.08
13164038--13164081	21	2.0	21	91	4	70	63	0	0	36	0.95
13168406--13168430	12	2.1	12	100	0	50	48	28	8	16	1.74
13169831--13170124	144	2.1	140	79	7	306	33	10	13	42	1.79
13183099--13183204	36	2.9	36	90	0	158	39	9	22	28	1.85
13186414--13186469	3	17.3	3	82	14	51	26	0	0	73	0.84
13186414--13186494	31	2.6	32	83	11	89	25	2	1	70	1.07
13188656--13188692	18	2.1	18	100	0	74	10	27	10	51	1.70
13189455--13189504	15	3.1	16	81	18	68	42	0	0	58	0.98
13189464--13189520	18	3.2	18	80	9	55	43	0	0	56	0.99
13189969--13190286	102	3.1	102	81	1	386	48	12	17	20	1.80
13190429--13190800	73	5.1	73	81	3	401	41	13	23	22	1.88
13190440--13190802	146	2.5	146	85	6	484	41	13	22	22	1.89
13190777--13190837	30	2.0	30	90	0	95	40	3	24	31	1.71
13190703--13190907	103	2.0	103	89	1	313	42	10	22	24	1.85
13190640--13190976	176	1.9	176	86	4	475	42	11	23	22	1.86
13190817--13191103	145	2.0	146	88	0	432	41	12	23	21	1.87
13190817--13191103	73	3.9	73	85	3	373	41	12	23	21	1.87
13204202--13204249	23	2.1	23	84	7	62	16	18	50	14	1.79
13204202--13204248	12	4.0	12	78	15	53	17	17	51	14	1.77
13204290--13204335	15	2.6	19	80	19	64	36	4	0	58	1.18
13204352--13204389	3	13.0	3	94	5	69	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13204535--13204573	3	12.0	3	84	15	51	33	0	0	66	0.92
13204535--13204573	10	3.9	10	83	9	53	33	0	0	66	0.92
13212276--13212315	18	2.2	19	86	13	57	35	17	10	37	1.83
13212699--13213023	160	2.0	160	97	0	614	43	21	5	30	1.74
13217616--13217658	21	2.0	21	95	0	77	23	9	37	30	1.86
13222302--13222356	21	2.7	20	78	10	58	45	7	5	41	1.55
13222304--13222356	20	2.6	20	82	8	63	43	7	5	43	1.56
13226334--13226422	44	2.1	42	83	8	108	40	3	2	53	1.30
13227350--13227488	55	2.5	55	76	1	143	28	13	14	43	1.84
13228872--13228911	20	2.0	21	90	5	64	70	5	0	25	1.08
13229072--13229117	18	2.6	18	86	6	67	63	2	8	26	1.35
13236807--13236875	27	2.3	30	76	11	72	15	17	1	65	1.35
13241120--13241503	49	7.9	50	81	9	386	29	13	21	35	1.91
13241738--13241812	19	3.9	19	78	13	66	70	4	0	25	1.04
13241902--13241942	14	2.9	14	100	0	82	29	56	0	14	1.39
13242990--13243029	20	2.0	21	90	5	64	70	5	0	25	1.08
13242989--13243040	21	2.4	22	81	15	63	67	5	0	26	1.13
13243208--13243253	18	2.6	18	86	6	67	63	2	8	26	1.35
13244224--13244259	15	2.4	15	90	0	54	63	11	8	16	1.49
13244784--13244910	68	1.9	68	81	3	157	42	14	7	36	1.73
13251446--13252590	290	4.0	288	81	6	1214	32	15	14	37	1.88
13251446--13252615	287	4.0	286	81	8	1162	32	15	14	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13252763--13252882	62	1.9	61	80	6	134	33	19	10	36	1.86
13253725--13253777	27	2.0	27	96	3	99	26	11	18	43	1.84
13255190--13255230	21	2.0	20	85	4	55	36	19	21	21	1.95
13264691--13265029	171	2.0	171	87	4	497	12	12	47	27	1.77
13265677--13265715	20	2.0	20	89	0	60	58	5	5	30	1.41
13265828--13265877	25	2.0	25	88	7	75	14	0	4	82	0.82
13265827--13265874	12	4.0	12	78	7	53	12	0	6	81	0.87
13265981--13266030	6	8.5	6	87	12	77	64	0	0	36	0.94
13265992--13266039	13	3.7	13	91	8	80	64	0	0	35	0.94
13265976--13266039	25	2.6	24	87	9	94	64	0	0	35	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117