genome.fa.s101.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  100  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17718041--17719525	712	2.1	716	87	2	2128	27	23	22	26	2.00
17719631--17719683	26	2.0	26	96	0	97	28	24	20	26	1.99
17718726--17725495	864	7.7	861	84	5	8288	25	24	24	25	2.00
17726091--17726143	26	2.0	26	96	0	97	28	26	18	26	1.98
17727010--17727062	26	2.0	26	96	0	97	26	24	20	28	1.99
17725897--17727724	920	2.0	919	88	1	2689	25	25	24	25	2.00
17727747--17729123	725	1.9	729	88	2	2086	27	23	22	26	1.99
17729346--17729398	26	2.0	26	96	0	97	26	24	20	28	1.99
17731110--17731160	26	2.0	26	88	0	75	31	19	17	31	1.95
17732005--17732057	26	2.0	26	92	0	88	30	24	18	26	1.98
17730279--17742609	903	13.7	895	84	5	14517	25	24	24	25	2.00
17733795--17733847	26	2.0	26	86	13	74	28	22	18	30	1.98
17734723--17734775	26	2.0	26	85	0	70	30	18	20	30	1.97
17735628--17735680	26	2.0	26	92	0	88	26	22	22	28	1.99
17736519--17736569	26	2.0	25	92	3	84	29	25	17	27	1.98
17737368--17737420	26	2.0	26	92	7	90	28	26	16	28	1.97
17738271--17738323	26	2.0	26	88	0	79	32	26	16	24	1.97
17739180--17739229	26	1.9	26	91	0	82	20	24	24	32	1.98
17740066--17740118	26	2.0	26	85	0	70	32	24	15	28	1.95
17740966--17741018	26	2.0	26	92	0	88	30	22	18	28	1.98
17741022--17741071	26	1.9	26	87	0	73	22	18	44	16	1.87
17741894--17741946	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17742624--17744887	895	2.6	873	88	3	3314	25	24	24	25	2.00
17745942--17745994	26	2.0	26	88	0	79	30	24	16	28	1.97
17746853--17746905	26	2.0	26	92	0	88	28	26	16	28	1.97
17745083--17747934	885	3.2	887	82	7	3426	25	24	24	25	2.00
17747949--17748299	159	2.2	158	81	4	413	21	25	27	25	1.99
17749007--17749060	26	2.1	26	100	0	108	24	25	22	27	2.00
17749919--17749971	26	2.0	26	92	0	88	28	24	18	28	1.98
17750823--17750873	26	2.0	26	92	0	84	31	29	13	25	1.94
17751523--17751553	16	1.9	16	93	0	53	3	67	22	6	1.28
17751734--17751786	26	2.0	26	92	0	88	26	22	20	30	1.98
17748938--17753440	909	5.0	905	89	3	6224	25	25	24	25	2.00
17752432--17752462	16	1.9	16	93	0	53	3	67	22	6	1.28
17752643--17752695	26	2.0	26	92	0	88	26	22	20	30	1.98
17754242--17754293	25	2.0	26	92	3	88	28	23	19	28	1.98
17755143--17755195	26	2.0	26	96	0	97	26	24	20	28	1.99
17753385--17761257	902	8.9	899	85	5	9714	25	24	24	25	2.00
17756919--17756971	26	2.0	26	88	0	79	26	24	20	28	1.99
17758827--17758860	17	2.0	17	94	0	59	14	23	44	17	1.86
17755169--17761257	890	6.9	879	83	6	6908	25	24	24	25	2.00
17760480--17762670	720	3.0	718	90	1	3295	25	23	24	26	2.00
17762800--17762852	26	2.0	26	92	0	88	28	24	18	28	1.98
17763700--17763752	26	2.0	26	92	0	88	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17766269--17766321	26	2.0	26	100	0	106	26	26	20	26	1.99
17764642--17766905	903	2.5	899	87	3	3242	26	23	23	25	2.00
17767661--17767711	26	2.0	26	92	0	84	29	23	17	29	1.97
17767685--17769306	856	1.9	862	84	5	2211	26	24	23	25	2.00
17769699--17769751	26	2.0	26	96	0	97	28	26	18	26	1.98
17771460--17771512	26	2.0	26	96	0	97	28	26	18	26	1.98
17772355--17772406	26	2.0	26	88	0	77	30	26	13	28	1.94
17769488--17810356	903	45.7	896	79	8	38641	25	24	24	25	2.00
17776735--17776787	26	2.0	26	100	0	106	26	26	20	26	1.99
17777627--17777679	26	2.0	26	96	0	97	26	24	20	28	1.99
17781141--17781193	26	2.0	26	96	0	97	26	24	20	28	1.99
17781886--17781936	27	1.9	27	96	4	95	25	29	19	25	1.99
17782073--17782125	26	2.0	26	96	0	97	32	26	15	26	1.95
17785635--17785687	26	2.0	26	92	0	88	28	24	18	28	1.98
17786901--17786956	26	2.2	26	93	0	94	30	23	17	28	1.97
17787798--17787850	26	2.0	26	100	0	106	26	26	20	26	1.99
17788700--17788750	26	2.0	26	92	0	84	29	31	13	25	1.94
17793140--17793192	26	2.0	26	88	0	79	26	28	20	24	1.99
17794933--17794985	26	2.0	26	100	0	106	26	26	20	26	1.99
17796702--17796754	26	2.0	26	85	0	70	32	24	18	24	1.97
17795833--17810356	894	16.4	884	84	5	17171	25	24	24	25	2.00
17798460--17798513	27	2.0	27	92	3	92	25	20	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17799355--17799407	26	2.0	26	92	0	88	26	22	20	30	1.98
17800252--17800304	26	2.0	26	92	0	88	28	24	18	28	1.98
17802923--17802975	26	2.0	26	92	0	88	28	24	20	26	1.99
17803818--17803870	26	2.0	26	92	7	90	26	26	18	28	1.98
17806475--17806527	26	2.0	26	92	0	88	28	24	18	28	1.98
17808203--17808255	26	2.0	26	85	7	72	24	22	22	30	1.99
17809995--17810047	26	2.0	26	88	0	79	26	26	18	28	1.98
17810759--17810810	26	2.0	26	92	0	86	34	23	17	25	1.96
17810606--17811023	185	2.3	185	94	0	719	25	28	27	19	1.99
17810944--17810995	26	2.0	26	92	0	86	34	23	17	25	1.96
17816483--17816535	26	2.0	26	96	0	97	28	26	18	26	1.98
17815103--17817462	902	2.6	897	85	4	3135	27	25	22	24	2.00
17817380--17817429	26	1.9	26	91	0	82	28	28	18	26	1.98
17817739--17817791	26	2.0	26	96	0	97	28	26	18	26	1.98
17817114--17817821	359	2.0	359	83	3	890	21	31	23	23	1.99
17817872--17817904	11	3.0	11	100	0	66	27	36	27	9	1.87
17819517--17819569	26	2.0	26	88	0	79	30	24	16	28	1.97
17820399--17820448	26	1.9	26	91	0	82	26	22	20	32	1.98
17821298--17821350	26	2.0	26	92	0	88	28	24	18	28	1.98
17818636--17823099	903	5.0	897	86	3	6006	25	24	24	25	2.00
17824820--17824870	26	2.0	26	96	0	93	27	25	17	29	1.98
17825717--17825769	26	2.0	26	96	0	97	30	24	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17826227--17827068	432	1.9	436	83	3	1097	25	26	24	23	2.00
17827068--17829930	899	3.2	866	83	6	3422	25	24	25	25	2.00
17828806--17828856	26	2.0	26	92	0	84	27	25	17	29	1.98
17826649--17829930	882	3.7	890	84	5	4125	25	24	24	24	2.00
17832896--17832948	26	2.0	26	96	0	97	28	26	18	26	1.98
17831242--17833078	901	2.0	905	87	1	2639	25	24	24	25	2.00
17834284--17835993	893	1.9	900	87	3	2555	26	24	23	25	2.00
17836790--17836841	26	2.0	25	92	3	86	26	25	19	28	1.98
17836036--17838573	889	2.9	864	85	5	3405	26	24	23	25	2.00
17838541--17838619	26	3.0	26	98	0	149	29	26	17	26	1.98
17838664--17838702	7	5.6	7	81	0	51	79	2	2	15	0.95
17840845--17840886	17	2.5	17	84	7	50	83	0	7	9	0.81
17840901--17840954	22	2.6	21	82	8	65	74	1	5	18	1.11
17841572--17841611	16	2.6	15	84	7	53	77	0	10	12	0.99
17841619--17841662	24	1.9	24	81	9	56	77	2	4	15	1.04
17841619--17841687	7	9.6	7	74	12	59	76	2	4	15	1.06
17840502--17848704	738	11.3	730	92	5	13297	67	4	11	17	1.37
17842210--17842268	23	2.6	23	75	5	57	76	5	8	10	1.15
17842293--17842331	15	2.5	16	83	4	53	79	0	7	12	0.93
17843724--17843780	18	3.1	18	78	21	64	75	0	10	14	1.05
17843750--17843847	7	13.7	7	72	14	58	76	2	6	15	1.07
17843746--17843803	28	2.1	28	83	3	73	79	1	5	13	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17844376--17844435	22	2.6	23	76	10	61	76	5	8	10	1.14
17844460--17844497	15	2.4	16	82	4	51	78	0	7	13	0.94
17844405--17844545	60	2.4	59	79	8	128	73	3	5	17	1.16
17844504--17844573	7	9.6	7	77	9	68	78	2	2	15	0.99
17844460--17844573	16	7.4	15	73	14	72	77	2	5	14	1.06
17845956--17846000	7	6.3	7	84	5	54	77	0	4	17	0.92
17846630--17846665	18	1.9	18	88	5	54	83	0	5	11	0.80
17846634--17846737	7	14.4	7	74	15	61	76	2	5	14	1.08
17846882--17846917	18	1.9	18	88	5	54	77	8	8	5	1.11
17845237--17848704	744	4.7	741	96	1	6101	67	4	11	16	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117