genome.fa.s101.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  5  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
455838--455866	15	1.9	15	100	0	58	62	10	20	6	1.50
456363--456460	3	32.0	3	88	4	115	30	7	0	62	1.22
456347--456410	31	2.1	31	91	5	103	21	4	0	73	1.01
456491--456520	15	1.9	16	93	6	53	16	0	0	83	0.65
456640--456673	17	2.0	17	94	0	59	50	0	0	50	1.00
456640--456670	16	1.9	16	93	0	53	48	0	0	51	1.00
456529--456761	57	4.1	58	82	6	253	44	5	11	39	1.64
456550--456761	116	1.8	116	84	6	295	43	5	12	38	1.66
459202--459237	3	12.0	3	100	0	72	33	0	0	66	0.92
459242--459279	14	2.8	13	85	14	51	0	23	0	76	0.79
459449--459493	23	2.0	22	83	8	56	44	17	15	22	1.86
460647--460689	18	2.4	18	84	7	52	62	0	6	30	1.21
460955--461321	189	1.9	188	96	1	682	36	11	15	36	1.84
461786--461829	23	2.0	22	86	4	61	81	9	2	6	0.94
472932--473693	45	17.3	45	86	10	1067	26	14	25	34	1.94
473007--473076	33	2.1	33	97	0	131	20	12	28	38	1.89
473040--473693	91	7.3	90	89	7	994	26	14	25	34	1.93
474922--474958	19	1.9	19	94	0	65	21	2	0	75	0.92
474929--474973	19	2.4	18	82	10	54	22	2	0	75	0.91
475275--475321	19	2.5	18	80	16	51	63	0	4	31	1.13
475569--475953	192	2.0	194	95	3	695	36	12	15	36	1.84
480321--480345	8	3.1	8	100	0	50	12	12	0	76	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480291--480342	25	2.1	24	86	10	70	15	11	0	73	1.11
486406--486452	19	2.4	20	86	10	62	74	0	14	10	1.07
487344--487431	38	2.4	36	84	5	115	36	13	14	35	1.86
487666--487757	42	2.2	42	92	0	157	22	11	22	42	1.86
487682--487772	42	2.2	42	89	0	137	23	12	23	41	1.87
487750--487982	108	2.2	104	83	7	278	24	13	19	42	1.87
487967--488057	30	2.9	32	73	16	91	23	13	19	43	1.86
488157--488276	49	2.4	49	83	5	145	29	12	16	41	1.85
488081--488297	49	4.6	48	71	10	133	28	14	17	39	1.89
488426--488478	25	2.1	25	86	6	72	13	9	0	77	0.99
488431--488493	33	1.9	33	87	6	92	9	11	0	79	0.94
488433--488488	29	2.0	29	89	10	89	10	12	0	76	1.01
489250--489282	12	2.6	13	85	9	50	42	33	9	15	1.78
489346--489407	20	3.1	20	71	13	56	27	0	1	70	0.96
489371--489417	13	3.5	13	80	13	51	29	0	0	70	0.88
493883--493923	5	8.0	5	83	5	55	2	0	14	82	0.76
493883--493923	21	2.0	20	90	4	64	2	0	14	82	0.76
494176--494227	24	2.1	24	89	3	77	51	3	3	40	1.38
495335--495473	58	2.4	58	91	1	217	35	14	7	42	1.73
495335--495615	63	4.7	58	81	8	253	37	12	6	43	1.69
495389--495602	63	3.5	62	84	6	258	37	13	7	42	1.71
498075--498105	13	2.4	13	88	0	53	67	3	6	22	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
498058--498133	21	3.7	21	70	20	61	75	1	3	19	1.04
498101--498132	12	2.6	13	85	14	50	87	0	0	12	0.54
498095--498133	19	2.0	20	90	5	62	84	0	0	15	0.62
498095--498130	9	3.9	10	82	17	51	86	0	0	13	0.58
498276--498306	12	2.5	12	94	5	53	0	9	6	83	0.79
498516--498546	12	2.6	12	89	0	53	0	0	9	90	0.46
498318--498545	124	1.9	123	86	7	329	28	15	14	41	1.86
498553--498761	42	5.1	41	88	5	325	36	23	15	23	1.94
498553--498761	80	2.5	82	91	4	334	36	23	15	23	1.94
500208--500252	14	3.5	13	85	8	56	2	8	0	88	0.58
500219--500253	10	3.4	10	88	4	52	2	8	0	88	0.61
500208--500243	17	2.2	17	90	9	58	0	11	0	88	0.50
500230--500286	30	1.9	30	85	0	78	8	17	0	73	1.07
503481--503687	65	3.4	58	84	9	229	35	13	8	42	1.74
507020--507121	41	2.6	38	78	7	98	33	6	5	53	1.51
507098--507134	19	1.9	19	94	0	65	37	13	0	48	1.43
507258--507315	22	2.7	21	84	13	73	58	1	0	39	1.08
508059--508095	19	1.9	19	88	0	56	37	10	0	51	1.37
508178--508263	21	4.0	22	80	11	88	58	1	1	39	1.13
510019--510067	19	2.6	19	74	6	55	53	0	2	44	1.12
510574--510679	40	2.6	40	82	4	124	34	8	4	51	1.53
510772--510842	22	3.2	22	82	13	92	63	0	1	35	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
510782--510820	20	2.1	18	85	9	51	69	0	2	28	1.02
510772--510857	22	4.0	21	79	14	70	62	1	1	34	1.10
511864--511903	21	1.9	20	85	10	53	57	0	2	40	1.12
511922--512018	49	2.0	49	93	0	167	44	7	2	46	1.42
512147--512179	14	2.4	14	90	5	50	45	0	15	39	1.46
514777--514805	13	2.2	13	100	0	58	51	13	27	6	1.66
514986--515020	18	1.9	18	88	0	52	40	2	0	57	1.14
523070--523150	28	3.0	27	71	20	71	46	1	3	48	1.27
523073--523137	25	2.6	26	75	18	66	46	0	4	49	1.22
523118--523219	17	5.5	17	66	21	53	50	0	0	47	1.14
523377--523419	19	2.2	20	87	4	61	44	2	2	51	1.27
523999--524037	20	2.0	20	85	10	53	38	0	2	58	1.12
526729--527135	144	2.8	144	90	0	636	28	22	15	34	1.94
526874--527093	72	3.1	71	64	19	166	28	20	17	34	1.95
526669--527203	144	3.7	144	84	2	628	27	22	15	34	1.94
526669--527203	288	1.9	288	84	3	727	27	22	15	34	1.94
530587--530693	55	2.0	54	87	5	153	42	11	9	36	1.73
531771--531810	21	1.9	22	90	10	66	57	0	0	42	0.98
534360--534405	20	2.4	19	85	3	56	17	2	6	73	1.14
535669--535717	19	2.9	17	82	11	57	34	0	0	65	0.93
535668--535733	17	3.8	18	75	17	68	33	0	1	65	1.02
536135--536409	84	3.3	84	78	3	304	38	17	15	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
536612--536689	32	2.4	33	91	4	122	33	20	16	29	1.95
543186--543216	16	1.9	16	93	0	53	19	0	35	45	1.51
543209--543251	21	2.0	21	82	8	52	4	0	44	51	1.22
543173--543282	51	2.1	52	81	8	127	13	0	36	50	1.42
543229--543375	15	9.5	15	74	12	118	16	0	33	49	1.51
543230--543375	31	4.7	31	77	7	154	16	0	32	50	1.51
543230--543376	16	9.5	15	73	11	118	16	0	32	50	1.50
544631--544700	36	1.9	36	97	0	131	18	8	21	51	1.72
544802--544838	16	2.3	16	86	13	58	8	0	8	83	0.80
544802--544858	30	2.0	28	86	6	78	10	0	10	78	0.95
544802--544859	14	3.9	15	82	10	75	10	0	10	79	0.94
545080--545124	22	2.0	23	86	4	65	31	22	20	26	1.98
545032--545234	110	1.8	110	85	4	284	37	15	20	26	1.92
545190--545257	23	3.0	23	89	2	102	27	20	25	26	1.99
545333--545380	22	2.2	22	92	0	78	31	20	20	27	1.98
545088--545492	132	3.1	132	86	0	567	36	19	21	22	1.95
545458--545520	22	2.9	22	78	0	72	30	23	22	23	1.99
546218--546361	66	2.2	66	81	7	177	35	17	20	27	1.94
546249--546366	33	3.5	33	82	3	148	33	20	22	23	1.97
546317--546408	47	2.0	47	91	0	148	35	19	21	22	1.96
546364--546472	33	3.3	33	90	0	155	33	14	22	29	1.94
546397--546636	82	2.9	82	91	0	381	31	16	25	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
546479--546554	33	2.3	33	97	0	143	32	18	23	25	1.97
546250--546702	115	4.0	114	76	6	443	32	17	23	26	1.96
546561--546715	33	4.7	33	91	0	256	33	16	22	27	1.96
546561--546718	66	2.4	66	97	0	298	32	16	22	28	1.95
547973--548026	11	5.4	10	81	14	58	0	9	3	87	0.67
547973--548026	10	5.8	9	85	12	65	0	9	3	87	0.67
553637--553768	64	2.1	64	98	1	257	43	9	15	31	1.79
555624--555668	21	2.3	19	79	17	56	46	0	6	46	1.29
555634--555682	21	2.3	22	96	3	91	46	0	10	42	1.37
557193--557263	22	3.2	22	82	13	92	35	1	0	63	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117