genome.fa.s101.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  72  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13266320--13266376	23	2.6	21	75	8	69	38	12	12	36	1.80
13266226--13266463	127	1.9	127	83	5	311	39	13	9	38	1.77
13266781--13266823	22	2.0	22	90	0	68	32	16	16	34	1.91
13267020--13267170	32	4.7	32	75	4	126	21	13	27	37	1.90
13267022--13267185	64	2.6	64	82	1	186	21	13	26	38	1.90
13267370--13267420	11	4.3	12	79	18	54	3	17	1	76	1.03
13267370--13267443	20	3.3	21	75	20	69	4	18	1	75	1.03
13267397--13267434	10	3.6	11	82	13	53	5	15	0	78	0.91
13267416--13267491	36	2.2	36	85	4	111	10	19	0	69	1.17
13268172--13268200	12	2.4	12	100	0	58	34	20	0	44	1.52
13268216--13268277	20	3.2	19	80	17	74	37	0	14	48	1.44
13268217--13268270	5	10.8	5	85	0	63	38	0	16	44	1.48
13270570--13270598	11	2.7	11	94	5	51	17	0	0	82	0.66
13271051--13271092	17	2.4	17	88	11	59	38	0	0	61	0.96
13271252--13271298	19	2.5	18	80	16	51	29	0	0	70	0.88
13272399--13272436	13	3.0	12	88	11	58	86	0	13	0	0.56
13272399--13272436	9	4.3	9	83	6	51	86	0	13	0	0.56
13274624--13274666	19	2.2	20	88	8	63	83	0	9	6	0.80
13275860--13275910	20	2.5	20	96	0	93	29	15	19	35	1.93
13276098--13276254	44	3.5	44	73	6	154	36	10	12	40	1.79
13276140--13276284	45	3.3	42	74	8	137	34	11	14	40	1.81
13276075--13276269	89	2.2	89	92	0	318	35	11	13	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13276075--13276302	89	2.6	89	86	1	251	36	12	13	37	1.82
13276583--13276625	18	2.4	18	88	7	61	37	13	16	32	1.88
13277420--13277556	3	47.0	3	77	8	113	33	5	2	57	1.37
13277528--13277553	5	5.2	5	100	0	52	38	0	0	61	0.96
13280379--13280687	132	2.3	134	79	5	334	17	22	9	50	1.74
13287675--13287717	17	2.5	18	77	11	54	11	11	0	76	1.02
13289486--13289524	18	2.2	18	85	0	51	12	0	7	79	0.93
13292601--13292645	21	2.1	21	91	0	72	22	17	24	35	1.95
13295575--13295630	24	2.3	24	87	3	76	7	30	14	48	1.70
13296241--13296512	145	1.9	145	86	3	395	41	12	14	31	1.83
13297246--13297531	62	4.6	62	74	9	208	29	15	14	40	1.87
13297246--13297531	121	2.3	126	80	8	293	29	15	14	40	1.87
13298221--13298321	37	2.7	36	80	8	123	43	19	11	24	1.85
13298431--13298494	22	2.9	22	76	0	65	32	12	20	34	1.90
13298326--13298581	126	2.0	127	87	2	363	35	16	14	34	1.89
13298453--13298865	105	4.0	104	81	8	438	36	15	13	35	1.86
13299838--13299909	30	2.4	31	79	9	85	5	8	6	79	1.06
13310619--13310657	3	13.0	3	100	0	78	33	0	0	66	0.92
13313145--13313199	24	2.3	25	87	6	78	9	36	7	47	1.63
13313692--13314104	145	2.8	144	83	5	460	40	13	14	32	1.84
13327900--13327929	2	15.0	2	100	0	60	50	0	0	50	1.00
13328558--13328642	39	2.3	37	82	11	111	38	11	9	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13328569--13328647	39	2.0	39	97	0	149	36	13	10	39	1.79
13328952--13329004	24	2.2	25	83	10	65	64	0	5	30	1.17
13328974--13329009	16	2.3	16	90	4	56	63	0	0	36	0.94
13329385--13329409	9	2.8	9	100	0	50	20	12	0	68	1.21
13329410--13329441	16	2.0	16	93	0	55	3	3	18	75	1.08
13329447--13329499	18	2.9	18	78	16	56	18	7	5	67	1.35
13329428--13329526	47	2.1	47	82	14	116	21	5	5	68	1.28
13330366--13330394	2	14.5	2	100	0	58	51	0	0	48	1.00
13331439--13331509	29	2.5	28	80	11	72	26	2	7	63	1.34
13336329--13337061	129	5.7	128	76	8	619	40	14	6	38	1.73
13336337--13337038	257	2.7	258	78	8	716	40	14	6	38	1.73
13336337--13337060	261	2.8	255	77	9	700	40	14	6	38	1.72
13338355--13338411	27	2.2	26	83	3	69	24	1	19	54	1.54
13338337--13338431	40	2.4	39	82	6	111	21	2	20	56	1.52
13338375--13338431	26	2.1	27	87	9	82	17	0	24	57	1.39
13338562--13338627	3	22.7	3	73	17	50	25	1	0	72	0.93
13338553--13338635	14	5.6	14	69	22	55	27	1	0	71	0.94
13338726--13338776	19	2.5	21	81	15	63	21	1	1	74	1.02
13338727--13338777	20	2.6	19	76	14	50	21	1	1	74	1.02
13339684--13339770	41	2.1	41	95	2	158	4	24	16	55	1.60
13339754--13339804	24	2.2	24	85	3	68	5	25	15	52	1.65
13340517--13340542	4	6.5	4	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13341019--13341337	130	2.5	129	77	6	304	39	13	6	40	1.70
13340951--13341669	129	5.5	126	73	9	428	38	14	7	39	1.74
13341726--13342199	130	3.7	130	81	5	444	39	16	6	37	1.76
13342437--13342987	129	4.3	129	76	7	449	40	16	5	37	1.72
13342437--13342987	258	2.1	258	79	5	567	40	16	5	37	1.72
13343066--13343118	26	2.0	26	96	0	97	26	22	13	37	1.91
13343102--13344499	130	10.8	131	73	8	678	38	14	7	38	1.75
13344595--13345038	129	3.4	129	77	6	373	37	16	7	38	1.76
13345184--13346252	130	8.2	129	77	7	873	38	16	8	37	1.78
13345034--13346157	516	2.2	521	79	8	1198	38	16	7	37	1.78
13345315--13346229	388	2.4	388	78	7	942	38	16	7	36	1.78
13346165--13346351	100	1.9	99	84	5	252	38	14	8	38	1.77
13347305--13347804	130	3.9	130	78	5	472	40	17	7	34	1.77
13348165--13348650	179	2.7	178	82	5	489	41	6	10	41	1.65
13350330--13350364	17	2.0	18	88	5	54	20	2	11	65	1.37
13350514--13354134	181	20.2	181	74	8	1844	40	8	10	41	1.69
13350507--13354134	362	10.1	361	74	7	2349	39	8	10	41	1.69
13354107--13354145	19	2.1	19	85	0	51	46	5	12	35	1.65
13354148--13355196	181	5.8	179	74	7	764	39	7	10	42	1.68
13355207--13355570	180	2.0	180	81	3	428	42	9	7	40	1.66
13354868--13355518	331	2.0	331	81	6	773	41	7	9	42	1.65
13355452--13355683	120	1.9	120	84	3	306	45	9	12	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13355573--13356863	176	7.2	178	74	10	575	40	8	10	39	1.71
13356750--13356980	122	1.9	122	81	4	286	38	7	6	46	1.59
13357238--13365950	181	48.3	181	71	11	3406	40	8	9	42	1.67
13356879--13365950	360	25.2	358	70	12	3238	40	8	9	42	1.67
13364031--13364067	16	2.3	17	86	9	51	43	2	16	37	1.62
13364404--13365949	357	4.3	356	74	11	1107	40	7	9	42	1.66
13362383--13365947	540	6.6	533	74	11	1455	40	7	9	42	1.67
13366790--13366834	21	2.1	22	91	4	74	22	8	4	64	1.40
13366864--13370269	180	19.0	178	75	8	1999	40	7	9	41	1.67
13366875--13373872	357	19.7	353	73	10	2630	40	8	9	41	1.68
13366867--13373334	716	9.1	708	73	9	2854	40	8	9	41	1.68
13370132--13370418	153	1.9	153	80	8	343	36	6	9	47	1.60
13370285--13371383	182	6.1	180	76	7	932	37	7	10	43	1.68
13371431--13373335	181	10.6	180	77	5	1635	41	8	9	40	1.69
13371431--13374140	359	7.6	360	76	8	1900	40	9	9	40	1.69
13372414--13372446	18	1.9	17	88	11	50	42	9	12	36	1.74
13371470--13373841	537	4.5	537	77	8	1842	41	9	9	40	1.69
13374015--13374266	126	2.0	126	92	0	414	34	7	11	46	1.68
13374695--13374727	18	1.9	17	88	11	50	48	6	6	39	1.53
13374141--13376525	540	4.4	535	79	5	2283	38	8	11	42	1.70
13374141--13376523	181	13.3	178	76	6	1944	38	8	11	41	1.70
13374151--13376523	357	6.6	353	77	5	1990	38	7	11	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13377065--13380413	182	18.3	181	69	14	860	40	7	10	41	1.68
13377922--13378055	67	2.0	67	82	0	160	43	9	11	35	1.73
13378015--13380411	181	13.4	181	75	9	1731	39	7	10	41	1.69
13378101--13380411	359	6.5	361	75	8	1909	39	7	10	41	1.68
13380409--13382856	180	13.6	180	76	7	1774	41	9	8	39	1.68
13380409--13382792	539	4.4	537	77	6	2019	42	9	8	39	1.67
13383199--13384675	181	8.2	180	74	7	983	40	10	8	40	1.69
13383240--13384670	361	4.0	355	77	6	1140	41	10	8	40	1.69
13384033--13385303	657	1.9	655	79	6	1433	39	9	8	42	1.68
13385254--13387220	358	5.5	357	74	9	859	43	9	7	39	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117