genome.fa.s101.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  73  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13384692--13393555	357	24.9	355	72	10	3598	41	9	7	40	1.68
13384672--13387385	181	15.2	181	74	9	1522	42	9	7	40	1.66
13387222--13387279	25	2.3	25	96	0	107	31	10	8	50	1.67
13387384--13398794	181	63.5	179	71	12	4840	41	10	8	39	1.68
13387384--13398794	361	31.7	359	71	11	5167	41	10	8	39	1.68
13387981--13388281	164	1.8	163	82	4	383	42	9	8	39	1.67
13388756--13389142	174	2.2	175	87	2	555	41	10	9	38	1.72
13389038--13389070	17	1.9	17	88	11	50	51	9	3	36	1.49
13388150--13398794	538	19.7	538	71	11	4549	41	9	8	39	1.68
13393498--13393633	72	1.9	73	83	11	183	47	8	5	38	1.55
13395930--13396260	177	1.9	175	81	6	407	41	11	9	38	1.72
13398694--13398901	107	1.9	107	82	3	258	35	11	7	45	1.68
13399610--13400238	330	1.9	331	79	4	716	44	10	7	37	1.68
13399941--13400515	181	3.2	178	80	6	536	42	10	9	37	1.71
13401077--13403194	181	11.8	181	76	7	1692	41	9	8	40	1.67
13401077--13404240	713	4.5	704	74	12	1942	41	9	8	40	1.67
13401077--13403150	354	5.8	352	74	10	1291	41	9	8	40	1.67
13403210--13404240	181	5.9	177	75	11	746	41	9	7	41	1.66
13403560--13403875	161	1.9	163	81	8	376	42	7	9	39	1.67
13403853--13403906	17	3.1	18	71	10	58	35	12	5	46	1.66
13403827--13404236	176	2.3	175	83	7	496	42	10	8	39	1.68
13404794--13405405	181	3.4	181	76	4	468	43	10	7	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13405191--13405692	182	2.8	178	77	8	490	40	10	8	41	1.69
13405697--13405737	21	2.0	21	100	0	82	41	0	19	39	1.52
13405730--13406063	180	1.9	177	80	5	395	41	9	6	42	1.64
13405887--13406308	213	2.0	214	87	3	618	43	10	7	38	1.67
13406099--13406892	181	4.4	181	76	9	545	42	9	7	40	1.65
13406098--13406861	173	4.3	174	77	6	599	42	9	6	40	1.65
13406900--13408100	180	6.7	179	75	8	877	41	10	7	40	1.69
13406933--13407754	358	2.3	357	79	8	857	42	9	7	39	1.67
13407000--13408127	538	2.1	536	79	7	1139	41	10	7	39	1.69
13408189--13408643	182	2.5	178	78	6	425	41	11	6	39	1.68
13408153--13409694	181	8.6	176	71	10	539	41	10	7	39	1.69
13409885--13411229	180	7.4	179	74	9	976	42	10	8	38	1.69
13411626--13413911	534	4.3	525	76	9	1534	42	9	8	39	1.68
13411622--13414109	181	13.9	180	73	8	1333	42	9	8	39	1.68
13411622--13414109	358	7.0	354	73	8	1562	42	9	8	39	1.68
13413171--13413475	168	1.8	169	82	2	398	39	9	6	44	1.63
13413552--13413883	180	1.8	181	81	1	416	40	9	9	40	1.69
13413821--13414422	313	1.9	313	83	2	787	44	9	7	38	1.65
13414134--13414556	180	2.3	181	83	5	505	43	9	8	38	1.67
13414264--13414660	180	2.2	180	81	4	471	41	11	8	39	1.71
13417190--13417280	30	3.0	30	66	28	84	38	4	15	41	1.67
13417182--13417512	57	5.8	57	84	6	400	41	7	13	37	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13421872--13421960	44	2.0	44	100	0	178	31	17	23	26	1.97
13422117--13422158	10	4.5	10	77	17	54	83	0	9	7	0.81
13422097--13422169	17	4.2	16	83	13	92	78	1	10	9	1.04
13422117--13422180	22	2.9	21	71	17	58	78	0	12	9	0.97
13422097--13422169	35	2.1	34	85	12	96	78	1	10	9	1.04
13422100--13422163	16	3.9	15	82	15	74	82	1	7	7	0.89
13423173--13423425	41	6.1	41	84	3	303	24	17	22	35	1.95
13423173--13423425	123	2.0	124	84	5	343	24	17	22	35	1.95
13423452--13423674	116	1.9	117	93	0	385	43	12	15	29	1.83
13423857--13423913	21	2.8	20	81	7	53	17	8	1	71	1.19
13423878--13423918	20	1.9	23	85	14	61	14	4	4	75	1.14
13424116--13424154	18	2.2	18	95	0	69	41	10	38	10	1.73
13426296--13426679	58	6.8	56	84	7	420	41	7	14	35	1.75
13426357--13426447	28	3.2	28	63	22	71	39	6	16	37	1.75
13426296--13426674	171	2.2	170	85	6	500	41	7	14	35	1.75
13427290--13429707	180	13.6	178	74	11	1483	42	10	7	40	1.67
13427301--13429707	537	4.5	536	76	9	1424	42	10	7	40	1.67
13428787--13428828	16	2.6	16	84	3	57	59	2	0	38	1.10
13428651--13429689	173	5.9	175	76	9	764	41	10	7	40	1.67
13428618--13429621	352	2.8	350	77	9	898	42	10	7	40	1.67
13430379--13430431	17	3.0	18	71	15	56	35	9	11	43	1.73
13430007--13430546	181	3.0	180	81	5	588	42	9	7	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13430596--13431845	180	7.0	179	76	7	995	39	9	8	41	1.69
13430599--13431845	181	7.0	180	74	10	596	39	9	8	41	1.69
13432192--13441806	181	53.9	179	74	8	5684	41	10	8	40	1.69
13433460--13433770	171	1.8	171	81	6	389	41	10	7	40	1.69
13432192--13441793	361	26.9	362	74	9	4892	41	10	8	40	1.69
13438204--13438241	20	1.9	20	84	10	51	57	2	5	34	1.35
13438028--13438366	174	1.9	177	83	5	438	41	11	9	37	1.74
13437225--13445063	180	43.7	180	72	10	4085	41	10	8	40	1.69
13441924--13445081	181	17.8	179	72	11	1119	42	9	8	39	1.68
13442768--13445122	182	13.2	180	74	8	1416	41	10	7	40	1.68
13445866--13447673	181	10.0	180	76	6	1419	41	9	9	40	1.68
13446632--13446672	18	2.4	17	88	8	57	41	4	7	46	1.53
13445958--13447673	543	3.2	535	80	5	1634	41	8	8	41	1.68
13447448--13447487	16	2.6	16	85	14	57	50	5	7	37	1.53
13447559--13447768	109	1.9	107	83	8	264	37	11	7	42	1.70
13447666--13447983	169	1.9	169	82	5	401	44	10	6	38	1.64
13448259--13449348	181	6.1	179	74	9	787	42	8	8	40	1.67
13450000--13450983	180	5.5	180	76	7	767	40	8	8	41	1.67
13450000--13450983	181	5.5	177	77	6	690	40	8	8	41	1.67
13451600--13452016	182	2.3	181	83	5	486	37	6	9	46	1.63
13452160--13454588	180	13.5	178	76	7	1788	40	7	9	41	1.67
13452132--13454585	361	6.8	361	76	6	1956	40	7	9	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13454354--13454398	17	2.6	18	82	13	58	42	11	11	35	1.76
13455044--13455379	58	5.7	57	81	6	384	35	13	6	44	1.71
13455042--13455371	118	2.8	118	91	2	527	35	13	7	43	1.73
13455396--13455471	11	6.9	11	72	20	61	69	2	0	27	1.01
13456257--13456304	13	3.8	12	78	10	51	81	4	4	10	0.97
13456277--13456332	28	2.0	28	82	3	67	73	3	7	16	1.20
13456257--13456340	21	3.8	20	75	18	78	75	4	7	13	1.18
13456409--13456548	7	19.7	7	69	10	61	72	1	2	23	1.03
13456411--13456503	4	22.8	4	68	20	50	70	1	3	24	1.08
13456407--13456552	17	8.2	18	70	21	96	72	1	2	23	1.03
13456482--13456552	36	2.0	36	88	0	106	74	1	0	23	0.90
13456445--13456552	12	8.7	12	71	21	73	73	1	1	23	1.03
13456738--13456926	43	4.4	44	81	7	217	39	20	15	24	1.92
13456695--13457150	245	1.9	243	82	5	571	36	16	13	33	1.88
13456978--13457248	42	6.4	42	83	5	188	39	19	14	26	1.90
13457026--13457248	42	5.3	41	85	3	293	37	19	14	28	1.91
13456981--13457248	85	3.2	84	86	3	349	38	19	14	27	1.91
13458166--13458248	29	2.9	28	81	11	98	7	15	0	77	0.98
13458166--13458248	28	2.9	27	83	13	96	7	15	0	77	0.98
13468009--13468392	192	2.0	192	98	0	741	36	15	18	29	1.92
13468856--13469194	61	5.7	58	84	4	426	34	14	8	42	1.76
13468856--13469193	119	2.8	118	88	3	491	34	14	7	42	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13469206--13469245	12	3.3	12	83	10	55	82	0	2	15	0.77
13470093--13470133	21	2.0	21	90	0	64	82	4	4	7	0.93
13470216--13470329	4	28.2	4	67	19	51	64	2	2	29	1.20
13470227--13470404	7	24.3	7	69	20	59	66	2	2	28	1.15
13470221--13470329	24	4.4	25	73	14	93	65	2	1	30	1.17
13470218--13470329	26	4.6	25	76	15	85	64	2	2	30	1.21
13470193--13470380	87	2.1	87	80	12	204	64	2	3	29	1.22
13470195--13470321	14	8.6	14	72	11	85	63	3	3	29	1.25
13470311--13470359	22	2.2	22	82	7	55	65	2	4	28	1.22
13470487--13470766	148	1.9	147	87	3	411	37	7	10	44	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117